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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 503 |
| Acc36I | ACCTGC | 1 cut(s) | 306 |
| Acc65I | GGTACC | 1 cut(s) | 527 |
| AccB1I | GGYRCC | 2 cut(s) | 314, 527 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 324 |
| AccBSI | CCGCTC | 1 cut(s) | 103 |
| AccI | GTMKAC | 1 cut(s) | 236 |
| AccII | CGCG | 3 cut(s) | 78, 544, 546 |
| AcoI | YGGCCR | 1 cut(s) | 582 |
| AcsI | RAATTY | 1 cut(s) | 289 |
| AcuI | CTGAAG | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 315 |
| AfaI | GTAC | 2 cut(s) | 202, 529 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 49, 102, 205, 262, 324, 377 |
| AgsI | TTSAA | 2 cut(s) | 221, 229 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 127, 576 |
| AjnI | CCWGG | 1 cut(s) | 370 |
| AluBI | AGCT | 3 cut(s) | 85, 115, 151 |
| AluI | AGCT | 3 cut(s) | 85, 115, 151 |
| Alw26I | GTCTC | 1 cut(s) | 454 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 43 |
| Ama87I | CYCGRG | 2 cut(s) | 110, 516 |
| AoxI | GGCC | 3 cut(s) | 9, 207, 582 |
| ApeKI | GCWGC | 2 cut(s) | 37, 284 |
| ApoI | RAATTY | 1 cut(s) | 289 |
| Asp718I | GGTACC | 1 cut(s) | 527 |
| AspLEI | GCGC | 4 cut(s) | 42, 317, 546, 548 |
| AspS9I | GGNCC | 4 cut(s) | 106, 196, 295, 342 |
| AsuC2I | CCSGG | 2 cut(s) | 178, 340 |
| AsuHPI | GGTGA | 4 cut(s) | 179, 200, 280, 443 |
| AvaI | CYCGRG | 2 cut(s) | 110, 516 |
| AvaII | GGWCC | 4 cut(s) | 106, 196, 295, 342 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 519, 552 |
| BanI | GGYRCC | 2 cut(s) | 314, 527 |
| BbvI | GCAGC | 2 cut(s) | 49, 271 |
| BccI | CCATC | 1 cut(s) | 518 |
| BceAI | ACGGC | 2 cut(s) | 80, 561 |
| BciT130I | CCWGG | 1 cut(s) | 372 |
| BcnI | CCSGG | 2 cut(s) | 178, 340 |
| BcoDI | GTCTC | 1 cut(s) | 454 |
| BfaI | CTAG | 1 cut(s) | 276 |
| BfoI | RGCGCY | 2 cut(s) | 43, 318 |
| BfuAI | ACCTGC | 1 cut(s) | 306 |
| BisI | GCNGC | 7 cut(s) | 38, 79, 210, 213, 282, 285, 542 |
| BlsI | GCNGC | 7 cut(s) | 39, 80, 211, 214, 283, 286, 543 |
| Bme1390I | CCNGG | 3 cut(s) | 178, 340, 372 |
| Bme18I | GGWCC | 4 cut(s) | 106, 196, 295, 342 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 127, 576 |
| BmeT110I | CYCGRG | 2 cut(s) | 110, 516 |
| BmgT120I | GGNCC | 4 cut(s) | 106, 196, 295, 342 |
| BmiI | GGNNCC | 5 cut(s) | 107, 316, 369, 387, 529 |
| BmrFI | CCNGG | 3 cut(s) | 178, 340, 372 |
| BmrI | ACTGGG | 1 cut(s) | 334 |
| BmsI | GCATC | 1 cut(s) | 61 |
| BmuI | ACTGGG | 1 cut(s) | 334 |
| BoxI | GACNNNNGTC | 1 cut(s) | 446 |
| Bpu10I | CCTNAGC | 2 cut(s) | 360, 412 |
| BpuMI | CCSGG | 2 cut(s) | 178, 340 |
| BsaHI | GRCGYC | 1 cut(s) | 315 |
| BsaJI | CCNNGG | 4 cut(s) | 48, 76, 371, 585 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 451, 481 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 49, 102, 205, 262, 324, 377 |
| Bse1I | ACTGG | 1 cut(s) | 329 |
| BseBI | CCWGG | 1 cut(s) | 372 |
| BseDI | CCNNGG | 4 cut(s) | 48, 76, 371, 585 |
| BseGI | GGATG | 5 cut(s) | 34, 76, 409, 451, 529 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 49, 102, 205, 262, 324, 377 |
| BseMII | CTCAG | 3 cut(s) | 252, 374, 426 |
| BseNI | ACTGG | 1 cut(s) | 329 |
| BsePI | GCGCGC | 1 cut(s) | 544 |
| BseXI | GCAGC | 2 cut(s) | 49, 271 |
| BseYI | CCCAGC | 3 cut(s) | 181, 347, 453 |
| Bsh1236I | CGCG | 3 cut(s) | 78, 544, 546 |
| BshFI | GGCC | 3 cut(s) | 11, 209, 584 |
| BshNI | GGYRCC | 2 cut(s) | 314, 527 |
| BsiHKCI | CYCGRG | 2 cut(s) | 110, 516 |
| BsiSI | CCGG | 2 cut(s) | 178, 340 |
| BslFI | GGGAC | 3 cut(s) | 119, 322, 472 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 49, 102, 205, 262, 324, 377 |
| BsmAI | GTCTC | 1 cut(s) | 454 |
| BsmFI | GGGAC | 3 cut(s) | 119, 322, 472 |
| BsmI | GAATGC | 1 cut(s) | 62 |
| BsnI | GGCC | 3 cut(s) | 11, 209, 584 |
| BsoBI | CYCGRG | 2 cut(s) | 110, 516 |
| Bsp143I | GATC | 1 cut(s) | 240 |
| BspANI | GGCC | 3 cut(s) | 11, 209, 584 |
| BspCNI | CTCAG | 3 cut(s) | 253, 373, 425 |
| BspFNI | CGCG | 3 cut(s) | 78, 544, 546 |
| BspLI | GGNNCC | 5 cut(s) | 107, 316, 369, 387, 529 |
| BspMI | ACCTGC | 1 cut(s) | 306 |
| BspT107I | GGYRCC | 2 cut(s) | 314, 527 |
| BsrBI | CCGCTC | 1 cut(s) | 103 |
| BsrI | ACTGG | 1 cut(s) | 329 |
| BssECI | CCNNGG | 4 cut(s) | 48, 76, 371, 585 |
| BssHII | GCGCGC | 1 cut(s) | 544 |
| BssMI | GATC | 1 cut(s) | 240 |
| BssNI | GRCGYC | 1 cut(s) | 315 |
| BssT1I | CCWWGG | 1 cut(s) | 48 |
| Bst2UI | CCWGG | 1 cut(s) | 372 |
| Bst4CI | ACNGT | 1 cut(s) | 200 |
| Bst6I | CTCTTC | 1 cut(s) | 149 |
| BstACI | GRCGYC | 1 cut(s) | 315 |
| BstC8I | GCNNGC | 4 cut(s) | 76, 83, 252, 546 |
| BstDEI | CTNAG | 5 cut(s) | 204, 261, 360, 399, 412 |
| BstDSI | CCRYGG | 1 cut(s) | 76 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 47, 260 |
| BstF5I | GGATG | 5 cut(s) | 34, 76, 409, 451, 529 |
| BstFNI | CGCG | 3 cut(s) | 78, 544, 546 |
| BstH2I | RGCGCY | 2 cut(s) | 43, 318 |
| BstHHI | GCGC | 4 cut(s) | 42, 317, 546, 548 |
| BstKTI | GATC | 1 cut(s) | 243 |
| BstMAI | GTCTC | 1 cut(s) | 454 |
| BstMBI | GATC | 1 cut(s) | 240 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 272, 281 |
| BstNI | CCWGG | 1 cut(s) | 372 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 446 |
| BstSCI | CCNGG | 3 cut(s) | 176, 338, 370 |
| BstUI | CGCG | 3 cut(s) | 78, 544, 546 |
| BstV1I | GCAGC | 2 cut(s) | 49, 271 |
| BsuRI | GGCC | 3 cut(s) | 11, 209, 584 |
| BtgI | CCRYGG | 1 cut(s) | 76 |
| BtsCI | GGATG | 5 cut(s) | 34, 76, 409, 451, 529 |
| BveI | ACCTGC | 1 cut(s) | 306 |
| Cac8I | GCNNGC | 4 cut(s) | 76, 83, 252, 546 |
| CaiI | CAGNNNCTG | 1 cut(s) | 43 |
| CfoI | GCGC | 4 cut(s) | 42, 317, 546, 548 |
| Cfr13I | GGNCC | 4 cut(s) | 106, 196, 295, 342 |
| Cfr42I | CCGCGG | 1 cut(s) | 79 |
| CpoI | CGGWCCG | 1 cut(s) | 342 |
| CseI | GACGC | 2 cut(s) | 324, 425 |
| Csp6I | GTAC | 2 cut(s) | 201, 528 |
| CspI | CGGWCCG | 1 cut(s) | 342 |
| CviAII | CATG | 3 cut(s) | 125, 502, 557 |
| CviQI | GTAC | 2 cut(s) | 201, 528 |
| DdeI | CTNAG | 5 cut(s) | 204, 261, 360, 399, 412 |
| DinI | GGCGCC | 1 cut(s) | 316 |
| DpnI | GATC | 1 cut(s) | 242 |
| DpnII | GATC | 1 cut(s) | 240 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 503 |
| DriI | GACNNNNNGTC | 2 cut(s) | 127, 576 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 503 |
| EaeI | YGGCCR | 1 cut(s) | 582 |
| Eam1104I | CTCTTC | 1 cut(s) | 149 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 127, 576 |
| EarI | CTCTTC | 1 cut(s) | 149 |
| EciI | GGCGGA | 2 cut(s) | 68, 536 |
| Eco130I | CCWWGG | 1 cut(s) | 48 |
| Eco47I | GGWCC | 4 cut(s) | 106, 196, 295, 342 |
| Eco57I | CTGAAG | 1 cut(s) | 173 |
| Eco88I | CYCGRG | 2 cut(s) | 110, 516 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 47, 260 |
| EcoO109I | RGGNCCY | 1 cut(s) | 106 |
| EcoRII | CCWGG | 1 cut(s) | 370 |
| EcoT14I | CCWWGG | 1 cut(s) | 48 |
| EgeI | GGCGCC | 1 cut(s) | 316 |
| EheI | GGCGCC | 1 cut(s) | 316 |
| ErhI | CCWWGG | 1 cut(s) | 48 |
| FaeI | CATG | 3 cut(s) | 128, 505, 560 |
| FaiI | YATR | 8 cut(s) | 68, 126, 246, 320, 503, 513, 533, 558 |
| FaqI | GGGAC | 3 cut(s) | 119, 322, 472 |
| FatI | CATG | 3 cut(s) | 124, 501, 556 |
| FauI | CCCGC | 2 cut(s) | 83, 96 |
| FblI | GTMKAC | 1 cut(s) | 236 |
| Fnu4HI | GCNGC | 7 cut(s) | 38, 79, 210, 213, 282, 285, 542 |
| FokI | GGATG | 5 cut(s) | 41, 83, 416, 458, 536 |
| Fsp4HI | GCNGC | 7 cut(s) | 38, 79, 210, 213, 282, 285, 542 |
| FspBI | CTAG | 1 cut(s) | 276 |
| GlaI | GCGC | 4 cut(s) | 41, 316, 545, 547 |
| GluI | GCNGC | 7 cut(s) | 38, 79, 210, 213, 282, 285, 542 |
| GsaI | CCCAGC | 3 cut(s) | 185, 351, 457 |
| HaeII | RGCGCY | 2 cut(s) | 43, 318 |
| HaeIII | GGCC | 3 cut(s) | 11, 209, 584 |
| HapII | CCGG | 2 cut(s) | 178, 340 |
| HgaI | GACGC | 2 cut(s) | 324, 425 |
| HhaI | GCGC | 4 cut(s) | 42, 317, 546, 548 |
| Hin1I | GRCGYC | 1 cut(s) | 315 |
| Hin1II | CATG | 3 cut(s) | 128, 505, 560 |
| Hin6I | GCGC | 4 cut(s) | 40, 315, 544, 546 |
| HinP1I | GCGC | 4 cut(s) | 40, 315, 544, 546 |
| HinfI | GANTC | 3 cut(s) | 62, 128, 221 |
| HpaII | CCGG | 2 cut(s) | 178, 340 |
| HphI | GGTGA | 4 cut(s) | 179, 200, 280, 443 |
| Hpy166II | GTNNAC | 1 cut(s) | 237 |
| Hpy188I | TCNGA | 3 cut(s) | 441, 481, 570 |
| Hpy8I | GTNNAC | 1 cut(s) | 237 |
| HpyAV | CCTTC | 4 cut(s) | 187, 235, 265, 304 |
| HpyCH4III | ACNGT | 1 cut(s) | 200 |
| HpyCH4V | TGCA | 1 cut(s) | 287 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 272, 281 |
| HpyF3I | CTNAG | 5 cut(s) | 204, 261, 360, 399, 412 |
| Hsp92I | GRCGYC | 1 cut(s) | 315 |
| Hsp92II | CATG | 3 cut(s) | 128, 505, 560 |
| HspAI | GCGC | 4 cut(s) | 40, 315, 544, 546 |
| KasI | GGCGCC | 1 cut(s) | 314 |
| KpnI | GGTACC | 1 cut(s) | 531 |
| KspI | CCGCGG | 1 cut(s) | 79 |
| Kzo9I | GATC | 1 cut(s) | 240 |
| LmnI | GCTCC | 1 cut(s) | 148 |
| Lsp1109I | GCAGC | 2 cut(s) | 49, 271 |
| LweI | GCATC | 1 cut(s) | 61 |
| MaeI | CTAG | 1 cut(s) | 276 |
| MalI | GATC | 1 cut(s) | 242 |
| MbiI | CCGCTC | 1 cut(s) | 103 |
| MboI | GATC | 1 cut(s) | 240 |
| MboII | GAAGA | 1 cut(s) | 166 |
| MluCI | AATT | 1 cut(s) | 289 |
| Mly113I | GGCGCC | 1 cut(s) | 315 |
| MlyI | GAGTC | 2 cut(s) | 56, 137 |
| MmeI | TCCRAC | 1 cut(s) | 141 |
| MnlI | CCTC | 9 cut(s) | 19, 119, 150, 157, 163, 179, 256, 477, 580 |
| MseI | TTAA | 1 cut(s) | 330 |
| MspA1I | CMGCKG | 3 cut(s) | 78, 284, 347 |
| MspI | CCGG | 2 cut(s) | 178, 340 |
| MspR9I | CCNGG | 3 cut(s) | 178, 340, 372 |
| Mva1269I | GAATGC | 1 cut(s) | 62 |
| MvaI | CCWGG | 1 cut(s) | 372 |
| MvnI | CGCG | 3 cut(s) | 78, 544, 546 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 272, 281 |
| NarI | GGCGCC | 1 cut(s) | 315 |
| NciI | CCSGG | 2 cut(s) | 178, 340 |
| NdeII | GATC | 1 cut(s) | 240 |
| NlaIII | CATG | 3 cut(s) | 128, 505, 560 |
| NlaIV | GGNNCC | 5 cut(s) | 107, 316, 369, 387, 529 |
| PaeR7I | CTCGAG | 1 cut(s) | 110 |
| PauI | GCGCGC | 1 cut(s) | 544 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 117 |
| PctI | GAATGC | 1 cut(s) | 62 |
| PfeI | GAWTC | 1 cut(s) | 221 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 324 |
| PkrI | GCNGC | 7 cut(s) | 39, 80, 211, 214, 283, 286, 543 |
| PleI | GAGTC | 2 cut(s) | 56, 136 |
| PluTI | GGCGCC | 1 cut(s) | 318 |
| PpsI | GAGTC | 2 cut(s) | 56, 136 |
| PpuMI | RGGWCCY | 1 cut(s) | 106 |
| PshAI | GACNNNNGTC | 1 cut(s) | 446 |
| Psp5II | RGGWCCY | 1 cut(s) | 106 |
| Psp6I | CCWGG | 1 cut(s) | 370 |
| PspFI | CCCAGC | 3 cut(s) | 181, 347, 453 |
| PspGI | CCWGG | 1 cut(s) | 370 |
| PspN4I | GGNNCC | 5 cut(s) | 107, 316, 369, 387, 529 |
| PspPI | GGNCC | 4 cut(s) | 106, 196, 295, 342 |
| PspPPI | RGGWCCY | 1 cut(s) | 106 |
| PspXI | VCTCGAGB | 1 cut(s) | 110 |
| PstNI | CAGNNNCTG | 1 cut(s) | 43 |
| PteI | GCGCGC | 1 cut(s) | 544 |
| RsaI | GTAC | 2 cut(s) | 202, 529 |
| RsaNI | GTAC | 2 cut(s) | 201, 528 |
| Rsr2I | CGGWCCG | 1 cut(s) | 342 |
| RsrII | CGGWCCG | 1 cut(s) | 342 |
| SacII | CCGCGG | 1 cut(s) | 79 |
| SaqAI | TTAA | 1 cut(s) | 330 |
| SatI | GCNGC | 7 cut(s) | 38, 79, 210, 213, 282, 285, 542 |
| Sau3AI | GATC | 1 cut(s) | 240 |
| Sau96I | GGNCC | 4 cut(s) | 106, 196, 295, 342 |
| SchI | GAGTC | 2 cut(s) | 56, 137 |
| ScrFI | CCNGG | 3 cut(s) | 178, 340, 372 |
| SfaNI | GCATC | 1 cut(s) | 61 |
| SfoI | GGCGCC | 1 cut(s) | 316 |
| Sfr274I | CTCGAG | 1 cut(s) | 110 |
| Sfr303I | CCGCGG | 1 cut(s) | 79 |
| SgrBI | CCGCGG | 1 cut(s) | 79 |
| SinI | GGWCC | 4 cut(s) | 106, 196, 295, 342 |
| SlaI | CTCGAG | 1 cut(s) | 110 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| Sse9I | AATT | 1 cut(s) | 289 |
| SspDI | GGCGCC | 1 cut(s) | 314 |
| SspMI | CTAG | 1 cut(s) | 276 |
| StyD4I | CCNGG | 3 cut(s) | 176, 338, 370 |
| StyI | CCWWGG | 1 cut(s) | 48 |
| TaaI | ACNGT | 1 cut(s) | 200 |
| TaqI | TCGA | 2 cut(s) | 111, 463 |
| TasI | AATT | 1 cut(s) | 289 |
| TauI | GCSGC | 5 cut(s) | 81, 212, 215, 284, 544 |
| TfiI | GAWTC | 1 cut(s) | 221 |
| Tru1I | TTAA | 1 cut(s) | 330 |
| Tru9I | TTAA | 1 cut(s) | 330 |
| TseI | GCWGC | 2 cut(s) | 37, 284 |
| TspGWI | ACGGA | 1 cut(s) | 458 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 324 |
| VpaK11BI | GGWCC | 4 cut(s) | 106, 196, 295, 342 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 47, 260 |
| XapI | RAATTY | 1 cut(s) | 289 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 19 |
| XhoI | CTCGAG | 1 cut(s) | 110 |
| XmiI | GTMKAC | 1 cut(s) | 236 |
| XspI | CTAG | 1 cut(s) | 276 |