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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 492 |
| AarI | CACCTGC | 2 cut(s) | 214, 1153 |
| Acc36I | ACCTGC | 4 cut(s) | 214, 564, 836, 1153 |
| Acc65I | GGTACC | 1 cut(s) | 164 |
| AccB1I | GGYRCC | 2 cut(s) | 164, 1461 |
| AccBSI | CCGCTC | 4 cut(s) | 1170, 1384, 1525, 1537 |
| AccII | CGCG | 5 cut(s) | 651, 656, 864, 875, 877 |
| AclWI | GGATC | 1 cut(s) | 466 |
| AcoI | YGGCCR | 1 cut(s) | 1287 |
| AcuI | CTGAAG | 3 cut(s) | 239, 356, 384 |
| AcyI | GRCGYC | 1 cut(s) | 1053 |
| AfaI | GTAC | 2 cut(s) | 166, 889 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 60, 325, 328, 375, 376, 377, 1133, 1471, 1582 |
| AflIII | ACRYGT | 1 cut(s) | 654 |
| AgeI | ACCGGT | 1 cut(s) | 578 |
| AgsI | TTSAA | 2 cut(s) | 1309, 1393 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1278 |
| AjiI | CACGTC | 1 cut(s) | 1549 |
| AjnI | CCWGG | 4 cut(s) | 146, 324, 371, 519 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 680, 712 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1214, 1246 |
| AluBI | AGCT | 8 cut(s) | 206, 340, 589, 644, 1304, 1423, 1444, 1507 |
| AluI | AGCT | 8 cut(s) | 206, 340, 589, 644, 1304, 1423, 1444, 1507 |
| Alw26I | GTCTC | 5 cut(s) | 770, 1079, 1415, 1424, 1555 |
| AlwI | GGATC | 1 cut(s) | 466 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 757, 1145 |
| Ama87I | CYCGRG | 3 cut(s) | 900, 1250, 1532 |
| AoxI | GGCC | 6 cut(s) | 186, 726, 892, 939, 1094, 1287 |
| ApaI | GGGCCC | 2 cut(s) | 190, 943 |
| ApeKI | GCWGC | 5 cut(s) | 203, 790, 984, 1001, 1145 |
| AsiGI | ACCGGT | 1 cut(s) | 578 |
| Asp718I | GGTACC | 1 cut(s) | 164 |
| AspLEI | GCGC | 4 cut(s) | 334, 821, 877, 923 |
| AsuC2I | CCSGG | 1 cut(s) | 633 |
| AsuHPI | GGTGA | 7 cut(s) | 252, 259, 568, 775, 822, 920, 1177 |
| AsuNHI | GCTAGC | 3 cut(s) | 76, 95, 644 |
| AvaI | CYCGRG | 3 cut(s) | 900, 1250, 1532 |
| AvaII | GGWCC | 4 cut(s) | 673, 950, 1272, 1528 |
| BaeGI | GKGCMC | 2 cut(s) | 190, 943 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 156, 189 |
| BanI | GGYRCC | 2 cut(s) | 164, 1461 |
| BanII | GRGCYC | 3 cut(s) | 190, 943, 1341 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 382, 414 |
| BbsI | GAAGAC | 2 cut(s) | 48, 1080 |
| BbvI | GCAGC | 5 cut(s) | 215, 777, 971, 1013, 1132 |
| BccI | CCATC | 5 cut(s) | 104, 818, 904, 1097, 1242 |
| BceAI | ACGGC | 4 cut(s) | 919, 972, 1274, 1302 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 641, 675 |
| BciT130I | CCWGG | 4 cut(s) | 148, 326, 373, 521 |
| BcnI | CCSGG | 1 cut(s) | 633 |
| BcoDI | GTCTC | 5 cut(s) | 770, 1079, 1415, 1424, 1555 |
| BfaI | CTAG | 6 cut(s) | 77, 96, 645, 1175, 1265, 1559 |
| BfmI | CTRYAG | 1 cut(s) | 1028 |
| BfoI | RGCGCY | 2 cut(s) | 335, 924 |
| BfuAI | ACCTGC | 4 cut(s) | 214, 564, 836, 1153 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1019 |
| Bme1390I | CCNGG | 5 cut(s) | 148, 326, 373, 521, 633 |
| Bme18I | GGWCC | 4 cut(s) | 673, 950, 1272, 1528 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1278 |
| BmeT110I | CYCGRG | 3 cut(s) | 900, 1250, 1532 |
| BmgBI | CACGTC | 1 cut(s) | 1549 |
| BmrFI | CCNGG | 5 cut(s) | 148, 326, 373, 521, 633 |
| BmsI | GCATC | 3 cut(s) | 786, 1333, 1483 |
| BmtI | GCTAGC | 3 cut(s) | 80, 99, 648 |
| BoxI | GACNNNNGTC | 2 cut(s) | 567, 1289 |
| BpiI | GAAGAC | 2 cut(s) | 48, 1080 |
| BpmI | CTGGAG | 1 cut(s) | 1397 |
| BpuEI | CTTGAG | 2 cut(s) | 334, 1359 |
| BpuMI | CCSGG | 1 cut(s) | 633 |
| Bsa29I | ATCGAT | 1 cut(s) | 470 |
| BsaHI | GRCGYC | 1 cut(s) | 1053 |
| BsaI | GGTCTC | 3 cut(s) | 1079, 1415, 1424 |
| BsaJI | CCNNGG | 5 cut(s) | 325, 371, 669, 935, 1470 |
| BsaWI | WCCGGW | 1 cut(s) | 578 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 692, 722, 1214, 1244, 1535, 1565 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 60, 325, 328, 375, 376, 377, 1133, 1471, 1582 |
| Bse118I | RCCGGY | 3 cut(s) | 11, 292, 578 |
| Bse1I | ACTGG | 2 cut(s) | 762, 769 |
| BseBI | CCWGG | 4 cut(s) | 148, 326, 373, 521 |
| BseCI | ATCGAT | 1 cut(s) | 470 |
| BseDI | CCNNGG | 5 cut(s) | 325, 371, 669, 935, 1470 |
| BseGI | GGATG | 2 cut(s) | 896, 1498 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 60, 325, 328, 375, 376, 377, 1133, 1471, 1582 |
| BseMII | CTCAG | 3 cut(s) | 33, 765, 1206 |
| BseNI | ACTGG | 2 cut(s) | 762, 769 |
| BseRI | GAGGAG | 1 cut(s) | 1082 |
| BseSI | GKGCMC | 2 cut(s) | 190, 943 |
| BseX3I | CGGCCG | 1 cut(s) | 1287 |
| BseXI | GCAGC | 5 cut(s) | 215, 777, 971, 1013, 1132 |
| BseYI | CCCAGC | 1 cut(s) | 729 |
| BsgI | GTGCAG | 1 cut(s) | 1181 |
| Bsh1236I | CGCG | 5 cut(s) | 651, 656, 864, 875, 877 |
| Bsh1285I | CGRYCG | 2 cut(s) | 16, 1290 |
| BshFI | GGCC | 6 cut(s) | 188, 728, 894, 941, 1096, 1289 |
| BshNI | GGYRCC | 2 cut(s) | 164, 1461 |
| BshTI | ACCGGT | 1 cut(s) | 578 |
| BshVI | ATCGAT | 1 cut(s) | 470 |
| BsiEI | CGRYCG | 2 cut(s) | 16, 1290 |
| BsiHKCI | CYCGRG | 3 cut(s) | 900, 1250, 1532 |
| BsiSI | CCGG | 4 cut(s) | 12, 293, 579, 632 |
| BslFI | GGGAC | 5 cut(s) | 128, 352, 963, 1150, 1541 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 60, 325, 328, 375, 376, 377, 1133, 1471, 1582 |
| BsmAI | GTCTC | 5 cut(s) | 770, 1079, 1415, 1424, 1555 |
| BsmBI | CGTCTC | 1 cut(s) | 1555 |
| BsmFI | GGGAC | 5 cut(s) | 128, 352, 963, 1150, 1541 |
| BsmI | GAATGC | 1 cut(s) | 1484 |
| BsnI | GGCC | 6 cut(s) | 188, 728, 894, 941, 1096, 1289 |
| Bso31I | GGTCTC | 3 cut(s) | 1079, 1415, 1424 |
| BsoBI | CYCGRG | 3 cut(s) | 900, 1250, 1532 |
| Bsp120I | GGGCCC | 2 cut(s) | 186, 939 |
| Bsp1286I | GDGCHC | 3 cut(s) | 190, 943, 1341 |
| Bsp143I | GATC | 3 cut(s) | 471, 598, 859 |
| Bsp19I | CCATGG | 1 cut(s) | 669 |
| BspANI | GGCC | 6 cut(s) | 188, 728, 894, 941, 1096, 1289 |
| BspCNI | CTCAG | 3 cut(s) | 32, 766, 1207 |
| BspDI | ATCGAT | 1 cut(s) | 470 |
| BspFNI | CGCG | 5 cut(s) | 651, 656, 864, 875, 877 |
| BspMI | ACCTGC | 4 cut(s) | 214, 564, 836, 1153 |
| BspOI | GCTAGC | 3 cut(s) | 80, 99, 648 |
| BspPI | GGATC | 1 cut(s) | 466 |
| BspT107I | GGYRCC | 2 cut(s) | 164, 1461 |
| BspTNI | GGTCTC | 3 cut(s) | 1079, 1415, 1424 |
| BsrBI | CCGCTC | 4 cut(s) | 1170, 1384, 1525, 1537 |
| BsrFI | RCCGGY | 3 cut(s) | 11, 292, 578 |
| BsrI | ACTGG | 2 cut(s) | 762, 769 |
| BssAI | RCCGGY | 3 cut(s) | 11, 292, 578 |
| BssECI | CCNNGG | 5 cut(s) | 325, 371, 669, 935, 1470 |
| BssMI | GATC | 3 cut(s) | 471, 598, 859 |
| BssNI | GRCGYC | 1 cut(s) | 1053 |
| BssT1I | CCWWGG | 2 cut(s) | 669, 1470 |
| Bst2UI | CCWGG | 4 cut(s) | 148, 326, 373, 521 |
| Bst4CI | ACNGT | 8 cut(s) | 164, 215, 606, 739, 1141, 1276, 1299, 1519 |
| Bst6I | CTCTTC | 3 cut(s) | 504, 1059, 1103 |
| BstACI | GRCGYC | 1 cut(s) | 1053 |
| BstDEI | CTNAG | 3 cut(s) | 19, 774, 1215 |
| BstDSI | CCRYGG | 2 cut(s) | 669, 935 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1469, 1580 |
| BstF5I | GGATG | 2 cut(s) | 896, 1498 |
| BstFNI | CGCG | 5 cut(s) | 651, 656, 864, 875, 877 |
| BstH2I | RGCGCY | 2 cut(s) | 335, 924 |
| BstHHI | GCGC | 4 cut(s) | 334, 821, 877, 923 |
| BstKTI | GATC | 3 cut(s) | 474, 601, 862 |
| BstMAI | GTCTC | 5 cut(s) | 770, 1079, 1415, 1424, 1555 |
| BstMBI | GATC | 3 cut(s) | 471, 598, 859 |
| BstMCI | CGRYCG | 2 cut(s) | 16, 1290 |
| BstNI | CCWGG | 4 cut(s) | 148, 326, 373, 521 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 567, 1289 |
| BstSCI | CCNGG | 5 cut(s) | 146, 324, 371, 519, 631 |
| BstSFI | CTRYAG | 1 cut(s) | 1028 |
| BstSLI | GKGCMC | 2 cut(s) | 190, 943 |
| BstUI | CGCG | 5 cut(s) | 651, 656, 864, 875, 877 |
| BstV1I | GCAGC | 5 cut(s) | 215, 777, 971, 1013, 1132 |
| BstV2I | GAAGAC | 2 cut(s) | 48, 1080 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 670 |
| BstZI | CGGCCG | 1 cut(s) | 1287 |
| Bsu15I | ATCGAT | 1 cut(s) | 470 |
| BsuRI | GGCC | 6 cut(s) | 188, 728, 894, 941, 1096, 1289 |
| BsuTUI | ATCGAT | 1 cut(s) | 470 |
| BtgI | CCRYGG | 2 cut(s) | 669, 935 |
| BtrI | CACGTC | 1 cut(s) | 1549 |
| BtsCI | GGATG | 2 cut(s) | 896, 1498 |
| BtsIMutI | CAGTG | 4 cut(s) | 755, 1146, 1338, 1515 |
| BveI | ACCTGC | 4 cut(s) | 214, 564, 836, 1153 |
| CaiI | CAGNNNCTG | 2 cut(s) | 757, 1145 |
| CfoI | GCGC | 4 cut(s) | 334, 821, 877, 923 |
| Cfr10I | RCCGGY | 3 cut(s) | 11, 292, 578 |
| ClaI | ATCGAT | 1 cut(s) | 470 |
| CseI | GACGC | 4 cut(s) | 508, 662, 1061, 1088 |
| Csp6I | GTAC | 2 cut(s) | 165, 888 |
| CspAI | ACCGGT | 1 cut(s) | 578 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 917, 952 |
| CviAII | CATG | 2 cut(s) | 503, 670 |
| CviQI | GTAC | 2 cut(s) | 165, 888 |
| DdeI | CTNAG | 3 cut(s) | 19, 774, 1215 |
| DpnI | GATC | 3 cut(s) | 473, 600, 861 |
| DpnII | GATC | 3 cut(s) | 471, 598, 859 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1278 |
| EaeI | YGGCCR | 1 cut(s) | 1287 |
| EagI | CGGCCG | 1 cut(s) | 1287 |
| Eam1104I | CTCTTC | 3 cut(s) | 504, 1059, 1103 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1278 |
| EarI | CTCTTC | 3 cut(s) | 504, 1059, 1103 |
| EciI | GGCGGA | 2 cut(s) | 221, 618 |
| EclXI | CGGCCG | 1 cut(s) | 1287 |
| Eco130I | CCWWGG | 2 cut(s) | 669, 1470 |
| Eco24I | GRGCYC | 3 cut(s) | 190, 943, 1341 |
| Eco31I | GGTCTC | 3 cut(s) | 1079, 1415, 1424 |
| Eco47I | GGWCC | 4 cut(s) | 673, 950, 1272, 1528 |
| Eco52I | CGGCCG | 1 cut(s) | 1287 |
| Eco57I | CTGAAG | 3 cut(s) | 239, 356, 384 |
| Eco88I | CYCGRG | 3 cut(s) | 900, 1250, 1532 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1469, 1580 |
| EcoO109I | RGGNCCY | 4 cut(s) | 186, 187, 940, 1528 |
| EcoRII | CCWGG | 4 cut(s) | 146, 324, 371, 519 |
| EcoT14I | CCWWGG | 2 cut(s) | 669, 1470 |
| EcoT38I | GRGCYC | 3 cut(s) | 190, 943, 1341 |
| ErhI | CCWWGG | 2 cut(s) | 669, 1470 |
| Esp3I | CGTCTC | 1 cut(s) | 1555 |
| FaeI | CATG | 2 cut(s) | 506, 673 |
| FaqI | GGGAC | 5 cut(s) | 128, 352, 963, 1150, 1541 |
| FatI | CATG | 2 cut(s) | 502, 669 |
| FauI | CCCGC | 4 cut(s) | 870, 932, 1134, 1518 |
| FokI | GGATG | 2 cut(s) | 883, 1505 |
| FriOI | GRGCYC | 3 cut(s) | 190, 943, 1341 |
| FspBI | CTAG | 6 cut(s) | 77, 96, 645, 1175, 1265, 1559 |
| GlaI | GCGC | 4 cut(s) | 333, 820, 876, 922 |
| GsaI | CCCAGC | 1 cut(s) | 733 |
| GsuI | CTGGAG | 1 cut(s) | 1397 |
| HaeII | RGCGCY | 2 cut(s) | 335, 924 |
| HaeIII | GGCC | 6 cut(s) | 188, 728, 894, 941, 1096, 1289 |
| HapII | CCGG | 4 cut(s) | 12, 293, 579, 632 |
| HgaI | GACGC | 4 cut(s) | 508, 662, 1061, 1088 |
| HhaI | GCGC | 4 cut(s) | 334, 821, 877, 923 |
| Hin1I | GRCGYC | 1 cut(s) | 1053 |
| Hin1II | CATG | 2 cut(s) | 506, 673 |
| Hin6I | GCGC | 4 cut(s) | 332, 819, 875, 921 |
| HinP1I | GCGC | 4 cut(s) | 332, 819, 875, 921 |
| HincII | GTYRAC | 3 cut(s) | 211, 609, 745 |
| HindII | GTYRAC | 3 cut(s) | 211, 609, 745 |
| HpaII | CCGG | 4 cut(s) | 12, 293, 579, 632 |
| HphI | GGTGA | 7 cut(s) | 252, 259, 568, 775, 822, 920, 1177 |
| Hpy166II | GTNNAC | 6 cut(s) | 211, 260, 310, 609, 745, 830 |
| Hpy188I | TCNGA | 8 cut(s) | 22, 219, 354, 460, 476, 775, 1216, 1284 |
| Hpy188III | TCNNGA | 4 cut(s) | 346, 900, 1175, 1414 |
| Hpy8I | GTNNAC | 6 cut(s) | 211, 260, 310, 609, 745, 830 |
| Hpy99I | CGWCG | 3 cut(s) | 656, 1055, 1082 |
| HpyAV | CCTTC | 7 cut(s) | 271, 575, 899, 1327, 1390, 1400, 1576 |
| HpyCH4III | ACNGT | 8 cut(s) | 164, 215, 606, 739, 1141, 1276, 1299, 1519 |
| HpyCH4IV | ACGT | 2 cut(s) | 45, 1548 |
| HpyCH4V | TGCA | 3 cut(s) | 1162, 1482, 1503 |
| HpyF3I | CTNAG | 3 cut(s) | 19, 774, 1215 |
| HpySE526I | ACGT | 2 cut(s) | 45, 1548 |
| Hsp92I | GRCGYC | 1 cut(s) | 1053 |
| Hsp92II | CATG | 2 cut(s) | 506, 673 |
| HspAI | GCGC | 4 cut(s) | 332, 819, 875, 921 |
| KpnI | GGTACC | 1 cut(s) | 168 |
| KroI | GCCGGC | 1 cut(s) | 292 |
| KroNI | GCCGGC | 1 cut(s) | 294 |
| Kzo9I | GATC | 3 cut(s) | 471, 598, 859 |
| LmnI | GCTCC | 6 cut(s) | 436, 586, 880, 995, 1344, 1420 |
| Lsp1109I | GCAGC | 5 cut(s) | 215, 777, 971, 1013, 1132 |
| LweI | GCATC | 3 cut(s) | 786, 1333, 1483 |
| MaeI | CTAG | 6 cut(s) | 77, 96, 645, 1175, 1265, 1559 |
| MaeII | ACGT | 2 cut(s) | 45, 1548 |
| MaeIII | GTNAC | 3 cut(s) | 158, 635, 1513 |
| MalI | GATC | 3 cut(s) | 473, 600, 861 |
| MbiI | CCGCTC | 4 cut(s) | 1170, 1384, 1525, 1537 |
| MboI | GATC | 3 cut(s) | 471, 598, 859 |
| MboII | GAAGA | 8 cut(s) | 53, 143, 521, 1073, 1076, 1085, 1120, 1405 |
| MfeI | CAATTG | 1 cut(s) | 1388 |
| MhlI | GDGCHC | 3 cut(s) | 190, 943, 1341 |
| MluCI | AATT | 3 cut(s) | 691, 1309, 1388 |
| MluI | ACGCGT | 1 cut(s) | 654 |
| MlyI | GAGTC | 6 cut(s) | 149, 604, 772, 1172, 1205, 1288 |
| MmeI | TCCRAC | 2 cut(s) | 438, 1318 |
| MroNI | GCCGGC | 1 cut(s) | 292 |
| MseI | TTAA | 4 cut(s) | 30, 155, 453, 1588 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1239 |
| MspA1I | CMGCKG | 2 cut(s) | 206, 269 |
| MspI | CCGG | 4 cut(s) | 12, 293, 579, 632 |
| MspR9I | CCNGG | 5 cut(s) | 148, 326, 373, 521, 633 |
| MunI | CAATTG | 1 cut(s) | 1388 |
| Mva1269I | GAATGC | 1 cut(s) | 1484 |
| MvaI | CCWGG | 4 cut(s) | 148, 326, 373, 521 |
| MvnI | CGCG | 5 cut(s) | 651, 656, 864, 875, 877 |
| NaeI | GCCGGC | 1 cut(s) | 294 |
| NciI | CCSGG | 1 cut(s) | 633 |
| NcoI | CCATGG | 1 cut(s) | 669 |
| NdeII | GATC | 3 cut(s) | 471, 598, 859 |
| NgoMIV | GCCGGC | 1 cut(s) | 292 |
| NheI | GCTAGC | 3 cut(s) | 76, 95, 644 |
| NlaIII | CATG | 2 cut(s) | 506, 673 |
| NmeAIII | GCCGAG | 1 cut(s) | 1334 |
| NmuCI | GTSAC | 2 cut(s) | 158, 1513 |
| PaeR7I | CTCGAG | 2 cut(s) | 1250, 1532 |
| PaqCI | CACCTGC | 2 cut(s) | 214, 1153 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1257 |
| PctI | GAATGC | 1 cut(s) | 1484 |
| PdiI | GCCGGC | 1 cut(s) | 294 |
| PfeI | GAWTC | 4 cut(s) | 349, 359, 461, 623 |
| PflFI | GACNNNGTC | 1 cut(s) | 1547 |
| PinAI | ACCGGT | 1 cut(s) | 578 |
| PleI | GAGTC | 6 cut(s) | 148, 604, 772, 1172, 1205, 1287 |
| PpsI | GAGTC | 6 cut(s) | 148, 604, 772, 1172, 1205, 1287 |
| PpuMI | RGGWCCY | 1 cut(s) | 1528 |
| PshAI | GACNNNNGTC | 2 cut(s) | 567, 1289 |
| PsiI | TTATAA | 1 cut(s) | 492 |
| Psp5II | RGGWCCY | 1 cut(s) | 1528 |
| Psp6I | CCWGG | 4 cut(s) | 146, 324, 371, 519 |
| PspFI | CCCAGC | 1 cut(s) | 729 |
| PspGI | CCWGG | 4 cut(s) | 146, 324, 371, 519 |
| PspOMI | GGGCCC | 2 cut(s) | 186, 939 |
| PspPPI | RGGWCCY | 1 cut(s) | 1528 |
| PspXI | VCTCGAGB | 2 cut(s) | 1250, 1532 |
| PstNI | CAGNNNCTG | 2 cut(s) | 757, 1145 |
| PsyI | GACNNNGTC | 1 cut(s) | 1547 |
| PvuII | CAGCTG | 1 cut(s) | 206 |
| RsaI | GTAC | 2 cut(s) | 166, 889 |
| RsaNI | GTAC | 2 cut(s) | 165, 888 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1239 |
| SaqAI | TTAA | 4 cut(s) | 30, 155, 453, 1588 |
| Sau3AI | GATC | 3 cut(s) | 471, 598, 859 |
| SchI | GAGTC | 6 cut(s) | 149, 604, 772, 1172, 1205, 1288 |
| ScrFI | CCNGG | 5 cut(s) | 148, 326, 373, 521, 633 |
| SduI | GDGCHC | 3 cut(s) | 190, 943, 1341 |
| SfaNI | GCATC | 3 cut(s) | 786, 1333, 1483 |
| SfcI | CTRYAG | 1 cut(s) | 1028 |
| Sfr274I | CTCGAG | 2 cut(s) | 1250, 1532 |
| SinI | GGWCC | 4 cut(s) | 673, 950, 1272, 1528 |
| SlaI | CTCGAG | 2 cut(s) | 1250, 1532 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1239 |
| SmlI | CTYRAG | 4 cut(s) | 313, 1250, 1374, 1532 |
| SmoI | CTYRAG | 4 cut(s) | 313, 1250, 1374, 1532 |
| Sse9I | AATT | 3 cut(s) | 691, 1309, 1388 |
| SspMI | CTAG | 6 cut(s) | 77, 96, 645, 1175, 1265, 1559 |
| StyD4I | CCNGG | 5 cut(s) | 146, 324, 371, 519, 631 |
| StyI | CCWWGG | 2 cut(s) | 669, 1470 |
| TaaI | ACNGT | 8 cut(s) | 164, 215, 606, 739, 1141, 1276, 1299, 1519 |
| TaiI | ACGT | 2 cut(s) | 48, 1551 |
| TaqI | TCGA | 5 cut(s) | 345, 470, 597, 1251, 1533 |
| TaqII | GACCGA | 1 cut(s) | 967 |
| TasI | AATT | 3 cut(s) | 691, 1309, 1388 |
| TfiI | GAWTC | 4 cut(s) | 349, 359, 461, 623 |
| Tru1I | TTAA | 4 cut(s) | 30, 155, 453, 1588 |
| Tru9I | TTAA | 4 cut(s) | 30, 155, 453, 1588 |
| TscAI | CASTG | 4 cut(s) | 762, 1146, 1338, 1522 |
| TseFI | GTSAC | 2 cut(s) | 158, 1513 |
| TseI | GCWGC | 5 cut(s) | 203, 790, 984, 1001, 1145 |
| Tsp45I | GTSAC | 2 cut(s) | 158, 1513 |
| TspDTI | ATGAA | 2 cut(s) | 701, 1074 |
| TspGWI | ACGGA | 1 cut(s) | 870 |
| TspRI | CASTG | 4 cut(s) | 762, 1146, 1338, 1522 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1547 |
| VpaK11BI | GGWCC | 4 cut(s) | 673, 950, 1272, 1528 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1469, 1580 |
| XbaI | TCTAGA | 1 cut(s) | 1174 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1441 |
| XhoI | CTCGAG | 2 cut(s) | 1250, 1532 |
| XspI | CTAG | 6 cut(s) | 77, 96, 645, 1175, 1265, 1559 |