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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 490 |
| AccB1I | GGYRCC | 4 cut(s) | 451, 490, 1172, 1208 |
| AccBSI | CCGCTC | 3 cut(s) | 681, 1057, 1320 |
| AccI | GTMKAC | 3 cut(s) | 548, 794, 987 |
| AccII | CGCG | 6 cut(s) | 180, 274, 339, 457, 486, 609 |
| AclI | AACGTT | 1 cut(s) | 1023 |
| AclWI | GGATC | 2 cut(s) | 817, 1104 |
| AcuI | CTGAAG | 3 cut(s) | 638, 802, 1536 |
| AcyI | GRCGYC | 4 cut(s) | 452, 872, 1005, 1209 |
| AfaI | GTAC | 5 cut(s) | 8, 152, 492, 676, 1139 |
| AflIII | ACRYGT | 2 cut(s) | 272, 1080 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1446 |
| AjiI | CACGTC | 2 cut(s) | 658, 838 |
| AjnI | CCWGG | 5 cut(s) | 357, 864, 885, 945, 1297 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 720, 752 |
| AluBI | AGCT | 9 cut(s) | 250, 260, 901, 955, 1018, 1036, 1069, 1181, 1262 |
| AluI | AGCT | 9 cut(s) | 250, 260, 901, 955, 1018, 1036, 1069, 1181, 1262 |
| Alw21I | GWGCWC | 1 cut(s) | 903 |
| Alw26I | GTCTC | 4 cut(s) | 278, 407, 1395, 1433 |
| AlwI | GGATC | 2 cut(s) | 817, 1104 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 886 |
| Ama87I | CYCGRG | 5 cut(s) | 410, 641, 1321, 1419, 1458 |
| AoxI | GGCC | 8 cut(s) | 303, 363, 603, 919, 942, 1167, 1410, 1497 |
| ApaI | GGGCCC | 1 cut(s) | 607 |
| Asp718I | GGTACC | 1 cut(s) | 490 |
| AspLEI | GCGC | 7 cut(s) | 341, 391, 454, 472, 486, 510, 1211 |
| AspS9I | GGNCC | 6 cut(s) | 334, 603, 604, 919, 943, 1411 |
| AsuC2I | CCSGG | 6 cut(s) | 241, 294, 379, 601, 1420, 1421 |
| AsuHPI | GGTGA | 5 cut(s) | 589, 737, 737, 1054, 1117 |
| AvaI | CYCGRG | 5 cut(s) | 410, 641, 1321, 1419, 1458 |
| AvaII | GGWCC | 1 cut(s) | 334 |
| BaeGI | GKGCMC | 4 cut(s) | 607, 837, 1177, 1287 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 214, 247 |
| BanI | GGYRCC | 4 cut(s) | 451, 490, 1172, 1208 |
| BanII | GRGCYC | 4 cut(s) | 431, 607, 903, 1318 |
| BauI | CACGAG | 1 cut(s) | 162 |
| Bbv12I | GWGCWC | 1 cut(s) | 903 |
| BccI | CCATC | 5 cut(s) | 116, 716, 1220, 1258, 1421 |
| BceAI | ACGGC | 5 cut(s) | 263, 294, 414, 529, 1464 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 977, 1011 |
| BciT130I | CCWGG | 5 cut(s) | 359, 866, 887, 947, 1299 |
| BciVI | GTATCC | 1 cut(s) | 242 |
| BcnI | CCSGG | 6 cut(s) | 241, 294, 379, 601, 1420, 1421 |
| BcoDI | GTCTC | 4 cut(s) | 278, 407, 1395, 1433 |
| BfaI | CTAG | 1 cut(s) | 1178 |
| BfmI | CTRYAG | 3 cut(s) | 33, 923, 1196 |
| BfoI | RGCGCY | 3 cut(s) | 455, 473, 1212 |
| BfuI | GTATCC | 1 cut(s) | 242 |
| BlpI | GCTNAGC | 1 cut(s) | 425 |
| Bme18I | GGWCC | 1 cut(s) | 334 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1446 |
| BmeT110I | CYCGRG | 5 cut(s) | 410, 641, 1321, 1419, 1458 |
| BmgBI | CACGTC | 2 cut(s) | 658, 838 |
| BmgT120I | GGNCC | 6 cut(s) | 334, 603, 604, 919, 943, 1411 |
| BmrI | ACTGGG | 4 cut(s) | 770, 1372, 1407, 1440 |
| BmsI | GCATC | 3 cut(s) | 1182, 1224, 1501 |
| BmuI | ACTGGG | 4 cut(s) | 770, 1372, 1407, 1440 |
| BoxI | GACNNNNGTC | 2 cut(s) | 800, 983 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1343, 1375 |
| BpmI | CTGGAG | 3 cut(s) | 380, 597, 1091 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 425 |
| BpuMI | CCSGG | 6 cut(s) | 241, 294, 379, 601, 1420, 1421 |
| BsaHI | GRCGYC | 4 cut(s) | 452, 872, 1005, 1209 |
| BsaI | GGTCTC | 1 cut(s) | 1433 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 65, 95, 353, 383, 725, 755 |
| Bse118I | RCCGGY | 3 cut(s) | 472, 1169, 1408 |
| Bse1I | ACTGG | 8 cut(s) | 14, 148, 225, 765, 1275, 1378, 1402, 1446 |
| Bse3DI | GCAATG | 3 cut(s) | 27, 336, 1000 |
| BseBI | CCWGG | 5 cut(s) | 359, 866, 887, 947, 1299 |
| BseGI | GGATG | 4 cut(s) | 108, 1250, 1432, 1486 |
| BseMI | GCAATG | 3 cut(s) | 27, 336, 1000 |
| BseMII | CTCAG | 2 cut(s) | 416, 1376 |
| BseNI | ACTGG | 8 cut(s) | 14, 148, 225, 765, 1275, 1378, 1402, 1446 |
| BseSI | GKGCMC | 4 cut(s) | 607, 837, 1177, 1287 |
| BsgI | GTGCAG | 2 cut(s) | 1022, 1265 |
| Bsh1236I | CGCG | 6 cut(s) | 180, 274, 339, 457, 486, 609 |
| Bsh1285I | CGRYCG | 2 cut(s) | 794, 798 |
| BshFI | GGCC | 8 cut(s) | 305, 365, 605, 921, 944, 1169, 1412, 1499 |
| BshNI | GGYRCC | 4 cut(s) | 451, 490, 1172, 1208 |
| BsiEI | CGRYCG | 2 cut(s) | 794, 798 |
| BsiHKAI | GWGCWC | 1 cut(s) | 903 |
| BsiHKCI | CYCGRG | 5 cut(s) | 410, 641, 1321, 1419, 1458 |
| BsiSI | CCGG | 8 cut(s) | 240, 293, 378, 473, 600, 1170, 1409, 1420 |
| BslFI | GGGAC | 3 cut(s) | 944, 1069, 1434 |
| BsmAI | GTCTC | 4 cut(s) | 278, 407, 1395, 1433 |
| BsmBI | CGTCTC | 1 cut(s) | 407 |
| BsmFI | GGGAC | 3 cut(s) | 944, 1069, 1434 |
| BsnI | GGCC | 8 cut(s) | 305, 365, 605, 921, 944, 1169, 1412, 1499 |
| Bso31I | GGTCTC | 1 cut(s) | 1433 |
| BsoBI | CYCGRG | 5 cut(s) | 410, 641, 1321, 1419, 1458 |
| Bsp120I | GGGCCC | 1 cut(s) | 603 |
| Bsp1286I | GDGCHC | 7 cut(s) | 431, 607, 837, 903, 1177, 1287, 1318 |
| Bsp143I | GATC | 2 cut(s) | 809, 1096 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 425 |
| BspANI | GGCC | 8 cut(s) | 305, 365, 605, 921, 944, 1169, 1412, 1499 |
| BspCNI | CTCAG | 2 cut(s) | 417, 1375 |
| BspFNI | CGCG | 6 cut(s) | 180, 274, 339, 457, 486, 609 |
| BspHI | TCATGA | 1 cut(s) | 853 |
| BspMAI | CTGCAG | 1 cut(s) | 1200 |
| BspPI | GGATC | 2 cut(s) | 817, 1104 |
| BspT107I | GGYRCC | 4 cut(s) | 451, 490, 1172, 1208 |
| BspTNI | GGTCTC | 1 cut(s) | 1433 |
| BsrBI | CCGCTC | 3 cut(s) | 681, 1057, 1320 |
| BsrDI | GCAATG | 3 cut(s) | 27, 336, 1000 |
| BsrFI | RCCGGY | 3 cut(s) | 472, 1169, 1408 |
| BsrI | ACTGG | 8 cut(s) | 14, 148, 225, 765, 1275, 1378, 1402, 1446 |
| BssAI | RCCGGY | 3 cut(s) | 472, 1169, 1408 |
| BssMI | GATC | 2 cut(s) | 809, 1096 |
| BssNI | GRCGYC | 4 cut(s) | 452, 872, 1005, 1209 |
| BssSI | CACGAG | 1 cut(s) | 162 |
| BssT1I | CCWWGG | 1 cut(s) | 1254 |
| Bst2BI | CACGAG | 1 cut(s) | 162 |
| Bst2UI | CCWGG | 5 cut(s) | 359, 866, 887, 947, 1299 |
| Bst4CI | ACNGT | 1 cut(s) | 1435 |
| Bst6I | CTCTTC | 2 cut(s) | 165, 579 |
| BstACI | GRCGYC | 4 cut(s) | 452, 872, 1005, 1209 |
| BstDEI | CTNAG | 2 cut(s) | 425, 1362 |
| BstDSI | CCRYGG | 3 cut(s) | 444, 455, 1009 |
| BstEII | GGTNACC | 1 cut(s) | 595 |
| BstF5I | GGATG | 4 cut(s) | 108, 1250, 1432, 1486 |
| BstFNI | CGCG | 6 cut(s) | 180, 274, 339, 457, 486, 609 |
| BstH2I | RGCGCY | 3 cut(s) | 455, 473, 1212 |
| BstHHI | GCGC | 7 cut(s) | 341, 391, 454, 472, 486, 510, 1211 |
| BstKTI | GATC | 2 cut(s) | 812, 1099 |
| BstMAI | GTCTC | 4 cut(s) | 278, 407, 1395, 1433 |
| BstMBI | GATC | 2 cut(s) | 809, 1096 |
| BstMCI | CGRYCG | 2 cut(s) | 794, 798 |
| BstNI | CCWGG | 5 cut(s) | 359, 866, 887, 947, 1299 |
| BstNSI | RCATGY | 1 cut(s) | 1084 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 800, 983 |
| BstPI | GGTNACC | 1 cut(s) | 595 |
| BstSFI | CTRYAG | 3 cut(s) | 33, 923, 1196 |
| BstSLI | GKGCMC | 4 cut(s) | 607, 837, 1177, 1287 |
| BstUI | CGCG | 6 cut(s) | 180, 274, 339, 457, 486, 609 |
| BsuI | GTATCC | 1 cut(s) | 242 |
| BsuRI | GGCC | 8 cut(s) | 305, 365, 605, 921, 944, 1169, 1412, 1499 |
| BtgI | CCRYGG | 3 cut(s) | 444, 455, 1009 |
| BtrI | CACGTC | 2 cut(s) | 658, 838 |
| BtsCI | GGATG | 4 cut(s) | 108, 1250, 1432, 1486 |
| BtsI | GCAGTG | 1 cut(s) | 1287 |
| BtsIMutI | CAGTG | 3 cut(s) | 1148, 1287, 1395 |
| CaiI | CAGNNNCTG | 1 cut(s) | 886 |
| CciI | TCATGA | 1 cut(s) | 853 |
| CfoI | GCGC | 7 cut(s) | 341, 391, 454, 472, 486, 510, 1211 |
| Cfr10I | RCCGGY | 3 cut(s) | 472, 1169, 1408 |
| Cfr13I | GGNCC | 6 cut(s) | 334, 603, 604, 919, 943, 1411 |
| Cfr42I | CCGCGG | 1 cut(s) | 458 |
| Cfr9I | CCCGGG | 1 cut(s) | 1419 |
| CseI | GACGC | 6 cut(s) | 280, 323, 424, 861, 981, 1013 |
| Csp6I | GTAC | 5 cut(s) | 7, 151, 491, 675, 1138 |
| CviAII | CATG | 5 cut(s) | 367, 854, 904, 1081, 1304 |
| CviQI | GTAC | 5 cut(s) | 7, 151, 491, 675, 1138 |
| DdeI | CTNAG | 2 cut(s) | 425, 1362 |
| DinI | GGCGCC | 2 cut(s) | 453, 1210 |
| DpnI | GATC | 2 cut(s) | 811, 1098 |
| DpnII | GATC | 2 cut(s) | 809, 1096 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1446 |
| Eam1104I | CTCTTC | 2 cut(s) | 165, 579 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1446 |
| EarI | CTCTTC | 2 cut(s) | 165, 579 |
| EciI | GGCGGA | 6 cut(s) | 220, 627, 1148, 1254, 1356, 1439 |
| Ecl136II | GAGCTC | 1 cut(s) | 901 |
| Eco130I | CCWWGG | 1 cut(s) | 1254 |
| Eco24I | GRGCYC | 4 cut(s) | 431, 607, 903, 1318 |
| Eco31I | GGTCTC | 1 cut(s) | 1433 |
| Eco47I | GGWCC | 1 cut(s) | 334 |
| Eco53kI | GAGCTC | 1 cut(s) | 901 |
| Eco57I | CTGAAG | 3 cut(s) | 638, 802, 1536 |
| Eco88I | CYCGRG | 5 cut(s) | 410, 641, 1321, 1419, 1458 |
| Eco91I | GGTNACC | 1 cut(s) | 595 |
| EcoICRI | GAGCTC | 1 cut(s) | 901 |
| EcoO109I | RGGNCCY | 1 cut(s) | 603 |
| EcoO65I | GGTNACC | 1 cut(s) | 595 |
| EcoRII | CCWGG | 5 cut(s) | 357, 864, 885, 945, 1297 |
| EcoT14I | CCWWGG | 1 cut(s) | 1254 |
| EcoT38I | GRGCYC | 4 cut(s) | 431, 607, 903, 1318 |
| EgeI | GGCGCC | 2 cut(s) | 453, 1210 |
| EheI | GGCGCC | 2 cut(s) | 453, 1210 |
| ErhI | CCWWGG | 1 cut(s) | 1254 |
| Esp3I | CGTCTC | 1 cut(s) | 407 |
| FaeI | CATG | 5 cut(s) | 370, 857, 907, 1084, 1307 |
| FaiI | YATR | 7 cut(s) | 368, 372, 530, 855, 905, 1082, 1305 |
| FaqI | GGGAC | 3 cut(s) | 944, 1069, 1434 |
| FatI | CATG | 5 cut(s) | 366, 853, 903, 1080, 1303 |
| FblI | GTMKAC | 3 cut(s) | 548, 794, 987 |
| FokI | GGATG | 4 cut(s) | 95, 1237, 1439, 1473 |
| FriOI | GRGCYC | 4 cut(s) | 431, 607, 903, 1318 |
| FspBI | CTAG | 1 cut(s) | 1178 |
| GlaI | GCGC | 7 cut(s) | 340, 390, 453, 471, 485, 509, 1210 |
| GsuI | CTGGAG | 3 cut(s) | 380, 597, 1091 |
| HaeII | RGCGCY | 3 cut(s) | 455, 473, 1212 |
| HaeIII | GGCC | 8 cut(s) | 305, 365, 605, 921, 944, 1169, 1412, 1499 |
| HapII | CCGG | 8 cut(s) | 240, 293, 378, 473, 600, 1170, 1409, 1420 |
| HgaI | GACGC | 6 cut(s) | 280, 323, 424, 861, 981, 1013 |
| HhaI | GCGC | 7 cut(s) | 341, 391, 454, 472, 486, 510, 1211 |
| Hin1I | GRCGYC | 4 cut(s) | 452, 872, 1005, 1209 |
| Hin1II | CATG | 5 cut(s) | 370, 857, 907, 1084, 1307 |
| Hin6I | GCGC | 7 cut(s) | 339, 389, 452, 470, 484, 508, 1209 |
| HinP1I | GCGC | 7 cut(s) | 339, 389, 452, 470, 484, 508, 1209 |
| HincII | GTYRAC | 3 cut(s) | 549, 795, 988 |
| HindII | GTYRAC | 3 cut(s) | 549, 795, 988 |
| HinfI | GANTC | 6 cut(s) | 160, 208, 286, 689, 1217, 1358 |
| HpaII | CCGG | 8 cut(s) | 240, 293, 378, 473, 600, 1170, 1409, 1420 |
| HphI | GGTGA | 5 cut(s) | 589, 737, 737, 1054, 1117 |
| Hpy166II | GTNNAC | 6 cut(s) | 549, 728, 795, 988, 1062, 1484 |
| Hpy188I | TCNGA | 6 cut(s) | 97, 113, 436, 1101, 1384, 1468 |
| Hpy188III | TCNNGA | 3 cut(s) | 164, 854, 1349 |
| Hpy8I | GTNNAC | 6 cut(s) | 549, 728, 795, 988, 1062, 1484 |
| Hpy99I | CGWCG | 6 cut(s) | 82, 550, 553, 842, 845, 975 |
| HpyAV | CCTTC | 7 cut(s) | 31, 454, 826, 934, 1138, 1159, 1511 |
| HpyCH4III | ACNGT | 1 cut(s) | 1435 |
| HpyCH4IV | ACGT | 4 cut(s) | 80, 657, 837, 1023 |
| HpyCH4V | TGCA | 5 cut(s) | 27, 993, 1039, 1198, 1246 |
| HpyF3I | CTNAG | 2 cut(s) | 425, 1362 |
| HpySE526I | ACGT | 4 cut(s) | 80, 657, 837, 1023 |
| Hsp92I | GRCGYC | 4 cut(s) | 452, 872, 1005, 1209 |
| Hsp92II | CATG | 5 cut(s) | 370, 857, 907, 1084, 1307 |
| HspAI | GCGC | 7 cut(s) | 339, 389, 452, 470, 484, 508, 1209 |
| KasI | GGCGCC | 2 cut(s) | 451, 1208 |
| KpnI | GGTACC | 1 cut(s) | 494 |
| KroI | GCCGGC | 2 cut(s) | 472, 1408 |
| KroNI | GCCGGC | 2 cut(s) | 474, 1410 |
| KspI | CCGCGG | 1 cut(s) | 458 |
| Kzo9I | GATC | 2 cut(s) | 809, 1096 |
| LweI | GCATC | 3 cut(s) | 1182, 1224, 1501 |
| MaeI | CTAG | 1 cut(s) | 1178 |
| MaeII | ACGT | 4 cut(s) | 80, 657, 837, 1023 |
| MaeIII | GTNAC | 3 cut(s) | 311, 523, 595 |
| MalI | GATC | 2 cut(s) | 811, 1098 |
| MbiI | CCGCTC | 3 cut(s) | 681, 1057, 1320 |
| MboI | GATC | 2 cut(s) | 809, 1096 |
| MboII | GAAGA | 4 cut(s) | 182, 508, 596, 631 |
| MhlI | GDGCHC | 7 cut(s) | 431, 607, 837, 903, 1177, 1287, 1318 |
| MluCI | AATT | 1 cut(s) | 87 |
| MluI | ACGCGT | 1 cut(s) | 272 |
| Mly113I | GGCGCC | 2 cut(s) | 452, 1209 |
| MlyI | GAGTC | 5 cut(s) | 154, 280, 683, 1211, 1352 |
| MmeI | TCCRAC | 2 cut(s) | 75, 519 |
| MroNI | GCCGGC | 2 cut(s) | 472, 1408 |
| MseI | TTAA | 2 cut(s) | 90, 135 |
| MspA1I | CMGCKG | 6 cut(s) | 457, 572, 653, 807, 1366, 1506 |
| MspI | CCGG | 8 cut(s) | 240, 293, 378, 473, 600, 1170, 1409, 1420 |
| MvaI | CCWGG | 5 cut(s) | 359, 866, 887, 947, 1299 |
| MvnI | CGCG | 6 cut(s) | 180, 274, 339, 457, 486, 609 |
| NaeI | GCCGGC | 2 cut(s) | 474, 1410 |
| NarI | GGCGCC | 2 cut(s) | 452, 1209 |
| NciI | CCSGG | 6 cut(s) | 241, 294, 379, 601, 1420, 1421 |
| NdeII | GATC | 2 cut(s) | 809, 1096 |
| NgoMIV | GCCGGC | 2 cut(s) | 472, 1408 |
| NlaIII | CATG | 5 cut(s) | 370, 857, 907, 1084, 1307 |
| NmeAIII | GCCGAG | 1 cut(s) | 733 |
| NmuCI | GTSAC | 2 cut(s) | 311, 595 |
| NspI | RCATGY | 1 cut(s) | 1084 |
| PaeR7I | CTCGAG | 1 cut(s) | 1321 |
| PagI | TCATGA | 1 cut(s) | 853 |
| PciI | ACATGT | 1 cut(s) | 1080 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 557 |
| PdiI | GCCGGC | 2 cut(s) | 474, 1410 |
| PfeI | GAWTC | 1 cut(s) | 208 |
| PfoI | TCCNGGA | 1 cut(s) | 357 |
| PleI | GAGTC | 5 cut(s) | 154, 280, 683, 1211, 1352 |
| PluTI | GGCGCC | 2 cut(s) | 455, 1212 |
| PpsI | GAGTC | 5 cut(s) | 154, 280, 683, 1211, 1352 |
| PscI | ACATGT | 1 cut(s) | 1080 |
| PshAI | GACNNNNGTC | 2 cut(s) | 800, 983 |
| Psp124BI | GAGCTC | 1 cut(s) | 903 |
| Psp1406I | AACGTT | 1 cut(s) | 1023 |
| Psp6I | CCWGG | 5 cut(s) | 357, 864, 885, 945, 1297 |
| PspEI | GGTNACC | 1 cut(s) | 595 |
| PspGI | CCWGG | 5 cut(s) | 357, 864, 885, 945, 1297 |
| PspOMI | GGGCCC | 1 cut(s) | 603 |
| PspPI | GGNCC | 6 cut(s) | 334, 603, 604, 919, 943, 1411 |
| PspXI | VCTCGAGB | 1 cut(s) | 1321 |
| PstI | CTGCAG | 1 cut(s) | 1200 |
| PstNI | CAGNNNCTG | 1 cut(s) | 886 |
| RsaI | GTAC | 5 cut(s) | 8, 152, 492, 676, 1139 |
| RsaNI | GTAC | 5 cut(s) | 7, 151, 491, 675, 1138 |
| SacI | GAGCTC | 1 cut(s) | 903 |
| SacII | CCGCGG | 1 cut(s) | 458 |
| SalI | GTCGAC | 3 cut(s) | 547, 793, 986 |
| SaqAI | TTAA | 2 cut(s) | 90, 135 |
| Sau3AI | GATC | 2 cut(s) | 809, 1096 |
| Sau96I | GGNCC | 6 cut(s) | 334, 603, 604, 919, 943, 1411 |
| SchI | GAGTC | 5 cut(s) | 154, 280, 683, 1211, 1352 |
| SduI | GDGCHC | 7 cut(s) | 431, 607, 837, 903, 1177, 1287, 1318 |
| SfaNI | GCATC | 3 cut(s) | 1182, 1224, 1501 |
| SfcI | CTRYAG | 3 cut(s) | 33, 923, 1196 |
| SfoI | GGCGCC | 2 cut(s) | 453, 1210 |
| Sfr274I | CTCGAG | 1 cut(s) | 1321 |
| Sfr303I | CCGCGG | 1 cut(s) | 458 |
| SgrBI | CCGCGG | 1 cut(s) | 458 |
| SgrDI | CGTCGACG | 1 cut(s) | 547 |
| SinI | GGWCC | 1 cut(s) | 334 |
| SlaI | CTCGAG | 1 cut(s) | 1321 |
| SmaI | CCCGGG | 1 cut(s) | 1421 |
| SmlI | CTYRAG | 1 cut(s) | 1321 |
| SmoI | CTYRAG | 1 cut(s) | 1321 |
| Sse9I | AATT | 1 cut(s) | 87 |
| SspDI | GGCGCC | 2 cut(s) | 451, 1208 |
| SspMI | CTAG | 1 cut(s) | 1178 |
| SstI | GAGCTC | 1 cut(s) | 903 |
| StyI | CCWWGG | 1 cut(s) | 1254 |
| TaaI | ACNGT | 1 cut(s) | 1435 |
| TaiI | ACGT | 4 cut(s) | 83, 660, 840, 1026 |
| TaqI | TCGA | 7 cut(s) | 548, 794, 966, 987, 1215, 1232, 1322 |
| TaqII | GACCGA | 2 cut(s) | 780, 1169 |
| TasI | AATT | 1 cut(s) | 87 |
| TatI | WGTACW | 1 cut(s) | 1137 |
| TfiI | GAWTC | 1 cut(s) | 208 |
| Tru1I | TTAA | 2 cut(s) | 90, 135 |
| Tru9I | TTAA | 2 cut(s) | 90, 135 |
| TscAI | CASTG | 3 cut(s) | 1155, 1294, 1402 |
| TseFI | GTSAC | 2 cut(s) | 311, 595 |
| Tsp45I | GTSAC | 2 cut(s) | 311, 595 |
| TspDTI | ATGAA | 1 cut(s) | 842 |
| TspGWI | ACGGA | 1 cut(s) | 530 |
| TspMI | CCCGGG | 1 cut(s) | 1419 |
| TspRI | CASTG | 3 cut(s) | 1155, 1294, 1402 |
| VpaK11BI | GGWCC | 1 cut(s) | 334 |
| XceI | RCATGY | 1 cut(s) | 1084 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 535, 883 |
| XhoI | CTCGAG | 1 cut(s) | 1321 |
| XmaI | CCCGGG | 1 cut(s) | 1419 |
| XmiI | GTMKAC | 3 cut(s) | 548, 794, 987 |
| XspI | CTAG | 1 cut(s) | 1178 |