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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 458 |
| AccB1I | GGYRCC | 4 cut(s) | 206, 242, 335, 458 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 252 |
| AccBSI | CCGCTC | 2 cut(s) | 342, 360 |
| AclWI | GGATC | 2 cut(s) | 18, 37 |
| AcoI | YGGCCR | 3 cut(s) | 135, 213, 435 |
| AcuI | CTGAAG | 3 cut(s) | 32, 96, 465 |
| AcyI | GRCGYC | 2 cut(s) | 243, 470 |
| AfaI | GTAC | 1 cut(s) | 460 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 52, 252 |
| AgsI | TTSAA | 2 cut(s) | 7, 232 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 507 |
| AjnI | CCWGG | 1 cut(s) | 108 |
| AleI | CACNNNNGTG | 1 cut(s) | 447 |
| AluBI | AGCT | 3 cut(s) | 16, 88, 116 |
| AluI | AGCT | 3 cut(s) | 16, 88, 116 |
| Alw26I | GTCTC | 2 cut(s) | 421, 536 |
| AlwI | GGATC | 2 cut(s) | 18, 37 |
| Ama87I | CYCGRG | 1 cut(s) | 533 |
| AoxI | GGCC | 4 cut(s) | 135, 201, 213, 435 |
| Asp718I | GGTACC | 1 cut(s) | 458 |
| AspLEI | GCGC | 1 cut(s) | 245 |
| AspS9I | GGNCC | 1 cut(s) | 492 |
| AvaI | CYCGRG | 1 cut(s) | 533 |
| AvaII | GGWCC | 1 cut(s) | 492 |
| BaeGI | GKGCMC | 1 cut(s) | 340 |
| BalI | TGGCCA | 1 cut(s) | 215 |
| BanI | GGYRCC | 4 cut(s) | 206, 242, 335, 458 |
| BanII | GRGCYC | 1 cut(s) | 479 |
| BauI | CACGAG | 1 cut(s) | 304 |
| BbvCI | CCTCAGC | 1 cut(s) | 117 |
| BccI | CCATC | 2 cut(s) | 254, 449 |
| BceAI | ACGGC | 1 cut(s) | 492 |
| BciT130I | CCWGG | 1 cut(s) | 110 |
| BcoDI | GTCTC | 2 cut(s) | 421, 536 |
| BfoI | RGCGCY | 1 cut(s) | 246 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 146 |
| BisI | GCNGC | 6 cut(s) | 21, 63, 138, 141, 299, 438 |
| BlsI | GCNGC | 6 cut(s) | 22, 64, 139, 142, 300, 439 |
| Bme1390I | CCNGG | 1 cut(s) | 110 |
| Bme18I | GGWCC | 1 cut(s) | 492 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 507 |
| BmeT110I | CYCGRG | 1 cut(s) | 533 |
| BmgT120I | GGNCC | 1 cut(s) | 492 |
| BmiI | GGNNCC | 6 cut(s) | 208, 244, 318, 337, 460, 493 |
| BmrFI | CCNGG | 1 cut(s) | 110 |
| BmsI | GCATC | 2 cut(s) | 272, 544 |
| BpmI | CTGGAG | 1 cut(s) | 110 |
| Bpu10I | CCTNAGC | 2 cut(s) | 117, 330 |
| Bsa29I | ATCGAT | 1 cut(s) | 249 |
| BsaHI | GRCGYC | 2 cut(s) | 243, 470 |
| BsaI | GGTCTC | 1 cut(s) | 421 |
| BsaJI | CCNNGG | 4 cut(s) | 109, 189, 210, 534 |
| BsaWI | WCCGGW | 1 cut(s) | 344 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 382, 412 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 52, 252 |
| Bse118I | RCCGGY | 1 cut(s) | 203 |
| BseBI | CCWGG | 1 cut(s) | 110 |
| BseCI | ATCGAT | 1 cut(s) | 249 |
| BseDI | CCNNGG | 4 cut(s) | 109, 189, 210, 534 |
| BseGI | GGATG | 1 cut(s) | 316 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 52, 252 |
| BseMII | CTCAG | 5 cut(s) | 108, 281, 398, 402, 419 |
| BseSI | GKGCMC | 1 cut(s) | 340 |
| BshFI | GGCC | 4 cut(s) | 137, 203, 215, 437 |
| BshNI | GGYRCC | 4 cut(s) | 206, 242, 335, 458 |
| BshVI | ATCGAT | 1 cut(s) | 249 |
| BsiHKCI | CYCGRG | 1 cut(s) | 533 |
| BsiSI | CCGG | 3 cut(s) | 204, 345, 371 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 52, 252 |
| BsmAI | GTCTC | 2 cut(s) | 421, 536 |
| BsnI | GGCC | 4 cut(s) | 137, 203, 215, 437 |
| Bso31I | GGTCTC | 1 cut(s) | 421 |
| BsoBI | CYCGRG | 1 cut(s) | 533 |
| Bsp1286I | GDGCHC | 2 cut(s) | 340, 479 |
| Bsp143I | GATC | 3 cut(s) | 10, 42, 496 |
| Bsp19I | CCATGG | 1 cut(s) | 210 |
| BspANI | GGCC | 4 cut(s) | 137, 203, 215, 437 |
| BspCNI | CTCAG | 5 cut(s) | 109, 280, 397, 403, 418 |
| BspDI | ATCGAT | 1 cut(s) | 249 |
| BspLI | GGNNCC | 6 cut(s) | 208, 244, 318, 337, 460, 493 |
| BspPI | GGATC | 2 cut(s) | 18, 37 |
| BspT107I | GGYRCC | 4 cut(s) | 206, 242, 335, 458 |
| BspTNI | GGTCTC | 1 cut(s) | 421 |
| BsrBI | CCGCTC | 2 cut(s) | 342, 360 |
| BsrFI | RCCGGY | 1 cut(s) | 203 |
| BssAI | RCCGGY | 1 cut(s) | 203 |
| BssECI | CCNNGG | 4 cut(s) | 109, 189, 210, 534 |
| BssMI | GATC | 3 cut(s) | 10, 42, 496 |
| BssNI | GRCGYC | 2 cut(s) | 243, 470 |
| BssSI | CACGAG | 1 cut(s) | 304 |
| BssT1I | CCWWGG | 1 cut(s) | 210 |
| Bst2BI | CACGAG | 1 cut(s) | 304 |
| Bst2UI | CCWGG | 1 cut(s) | 110 |
| Bst4CI | ACNGT | 1 cut(s) | 228 |
| BstACI | GRCGYC | 2 cut(s) | 243, 470 |
| BstC8I | GCNNGC | 5 cut(s) | 18, 106, 273, 340, 427 |
| BstDEI | CTNAG | 7 cut(s) | 66, 117, 267, 330, 384, 405, 411 |
| BstDSI | CCRYGG | 1 cut(s) | 210 |
| BstF5I | GGATG | 1 cut(s) | 316 |
| BstH2I | RGCGCY | 1 cut(s) | 246 |
| BstHHI | GCGC | 1 cut(s) | 245 |
| BstKTI | GATC | 3 cut(s) | 13, 45, 499 |
| BstMAI | GTCTC | 2 cut(s) | 421, 536 |
| BstMBI | GATC | 3 cut(s) | 10, 42, 496 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 26, 71, 137, 146, 335 |
| BstNI | CCWGG | 1 cut(s) | 110 |
| BstSCI | CCNGG | 1 cut(s) | 108 |
| BstSLI | GKGCMC | 1 cut(s) | 340 |
| BstX2I | RGATCY | 1 cut(s) | 42 |
| BstYI | RGATCY | 1 cut(s) | 42 |
| Bsu15I | ATCGAT | 1 cut(s) | 249 |
| BsuRI | GGCC | 4 cut(s) | 137, 203, 215, 437 |
| BsuTUI | ATCGAT | 1 cut(s) | 249 |
| BtgI | CCRYGG | 1 cut(s) | 210 |
| BtsCI | GGATG | 1 cut(s) | 316 |
| BtsI | GCAGTG | 1 cut(s) | 527 |
| BtsIMutI | CAGTG | 1 cut(s) | 527 |
| Cac8I | GCNNGC | 5 cut(s) | 18, 106, 273, 340, 427 |
| CfoI | GCGC | 1 cut(s) | 245 |
| Cfr10I | RCCGGY | 1 cut(s) | 203 |
| Cfr13I | GGNCC | 1 cut(s) | 492 |
| ClaI | ATCGAT | 1 cut(s) | 249 |
| CseI | GACGC | 2 cut(s) | 356, 478 |
| Csp6I | GTAC | 1 cut(s) | 459 |
| CviAII | CATG | 3 cut(s) | 184, 211, 567 |
| CviQI | GTAC | 1 cut(s) | 459 |
| DdeI | CTNAG | 7 cut(s) | 66, 117, 267, 330, 384, 405, 411 |
| DinI | GGCGCC | 1 cut(s) | 244 |
| DpnI | GATC | 3 cut(s) | 12, 44, 498 |
| DpnII | GATC | 3 cut(s) | 10, 42, 496 |
| DriI | GACNNNNNGTC | 1 cut(s) | 507 |
| EaeI | YGGCCR | 3 cut(s) | 135, 213, 435 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 507 |
| EciI | GGCGGA | 2 cut(s) | 182, 389 |
| Eco130I | CCWWGG | 1 cut(s) | 210 |
| Eco24I | GRGCYC | 1 cut(s) | 479 |
| Eco31I | GGTCTC | 1 cut(s) | 421 |
| Eco47I | GGWCC | 1 cut(s) | 492 |
| Eco57I | CTGAAG | 3 cut(s) | 32, 96, 465 |
| Eco88I | CYCGRG | 1 cut(s) | 533 |
| EcoRII | CCWGG | 1 cut(s) | 108 |
| EcoT14I | CCWWGG | 1 cut(s) | 210 |
| EcoT38I | GRGCYC | 1 cut(s) | 479 |
| EgeI | GGCGCC | 1 cut(s) | 244 |
| EheI | GGCGCC | 1 cut(s) | 244 |
| ErhI | CCWWGG | 1 cut(s) | 210 |
| FaeI | CATG | 3 cut(s) | 187, 214, 570 |
| FaiI | YATR | 7 cut(s) | 60, 146, 185, 212, 365, 467, 568 |
| FatI | CATG | 3 cut(s) | 183, 210, 566 |
| FauI | CCCGC | 3 cut(s) | 45, 280, 347 |
| Fnu4HI | GCNGC | 6 cut(s) | 21, 63, 138, 141, 299, 438 |
| FokI | GGATG | 1 cut(s) | 323 |
| FriOI | GRGCYC | 1 cut(s) | 479 |
| Fsp4HI | GCNGC | 6 cut(s) | 21, 63, 138, 141, 299, 438 |
| GlaI | GCGC | 1 cut(s) | 244 |
| GluI | GCNGC | 6 cut(s) | 21, 63, 138, 141, 299, 438 |
| GsuI | CTGGAG | 1 cut(s) | 110 |
| HaeII | RGCGCY | 1 cut(s) | 246 |
| HaeIII | GGCC | 4 cut(s) | 137, 203, 215, 437 |
| HapII | CCGG | 3 cut(s) | 204, 345, 371 |
| HgaI | GACGC | 2 cut(s) | 356, 478 |
| HhaI | GCGC | 1 cut(s) | 245 |
| Hin1I | GRCGYC | 2 cut(s) | 243, 470 |
| Hin1II | CATG | 3 cut(s) | 187, 214, 570 |
| Hin6I | GCGC | 1 cut(s) | 243 |
| HinP1I | GCGC | 1 cut(s) | 243 |
| HinfI | GANTC | 1 cut(s) | 278 |
| HpaII | CCGG | 3 cut(s) | 204, 345, 371 |
| Hpy188I | TCNGA | 5 cut(s) | 291, 412, 496, 501, 517 |
| HpyAV | CCTTC | 3 cut(s) | 56, 232, 489 |
| HpyCH4III | ACNGT | 1 cut(s) | 228 |
| HpyCH4IV | ACGT | 1 cut(s) | 127 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 26, 71, 137, 146, 335 |
| HpyF3I | CTNAG | 7 cut(s) | 66, 117, 267, 330, 384, 405, 411 |
| HpySE526I | ACGT | 1 cut(s) | 127 |
| Hsp92I | GRCGYC | 2 cut(s) | 243, 470 |
| Hsp92II | CATG | 3 cut(s) | 187, 214, 570 |
| HspAI | GCGC | 1 cut(s) | 243 |
| KasI | GGCGCC | 1 cut(s) | 242 |
| KpnI | GGTACC | 1 cut(s) | 462 |
| Kzo9I | GATC | 3 cut(s) | 10, 42, 496 |
| LmnI | GCTCC | 2 cut(s) | 113, 347 |
| LweI | GCATC | 2 cut(s) | 272, 544 |
| MaeII | ACGT | 1 cut(s) | 127 |
| MalI | GATC | 3 cut(s) | 12, 44, 498 |
| MbiI | CCGCTC | 2 cut(s) | 342, 360 |
| MboI | GATC | 3 cut(s) | 10, 42, 496 |
| MboII | GAAGA | 1 cut(s) | 94 |
| MflI | RGATCY | 1 cut(s) | 42 |
| MhlI | GDGCHC | 2 cut(s) | 340, 479 |
| MlsI | TGGCCA | 1 cut(s) | 215 |
| MluCI | AATT | 1 cut(s) | 379 |
| MluNI | TGGCCA | 1 cut(s) | 215 |
| Mly113I | GGCGCC | 1 cut(s) | 243 |
| MlyI | GAGTC | 1 cut(s) | 287 |
| MmeI | TCCRAC | 1 cut(s) | 269 |
| MnlI | CCTC | 8 cut(s) | 112, 184, 300, 319, 406, 408, 529, 570 |
| Mox20I | TGGCCA | 1 cut(s) | 215 |
| MscI | TGGCCA | 1 cut(s) | 215 |
| MseI | TTAA | 1 cut(s) | 156 |
| MslI | CAYNNNNRTG | 1 cut(s) | 447 |
| Msp20I | TGGCCA | 1 cut(s) | 215 |
| MspA1I | CMGCKG | 3 cut(s) | 16, 52, 551 |
| MspI | CCGG | 3 cut(s) | 204, 345, 371 |
| MspR9I | CCNGG | 1 cut(s) | 110 |
| MvaI | CCWGG | 1 cut(s) | 110 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 26, 71, 137, 146, 335 |
| NarI | GGCGCC | 1 cut(s) | 243 |
| NcoI | CCATGG | 1 cut(s) | 210 |
| NdeII | GATC | 3 cut(s) | 10, 42, 496 |
| NlaIII | CATG | 3 cut(s) | 187, 214, 570 |
| NlaIV | GGNNCC | 6 cut(s) | 208, 244, 318, 337, 460, 493 |
| NmeAIII | GCCGAG | 2 cut(s) | 301, 498 |
| OliI | CACNNNNGTG | 1 cut(s) | 447 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 252 |
| PkrI | GCNGC | 6 cut(s) | 22, 64, 139, 142, 300, 439 |
| PleI | GAGTC | 1 cut(s) | 286 |
| PluTI | GGCGCC | 1 cut(s) | 246 |
| PpsI | GAGTC | 1 cut(s) | 286 |
| Psp6I | CCWGG | 1 cut(s) | 108 |
| PspGI | CCWGG | 1 cut(s) | 108 |
| PspN4I | GGNNCC | 6 cut(s) | 208, 244, 318, 337, 460, 493 |
| PspPI | GGNCC | 1 cut(s) | 492 |
| PsuI | RGATCY | 1 cut(s) | 42 |
| PvuII | CAGCTG | 1 cut(s) | 16 |
| RsaI | GTAC | 1 cut(s) | 460 |
| RsaNI | GTAC | 1 cut(s) | 459 |
| RseI | CAYNNNNRTG | 1 cut(s) | 447 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 6 cut(s) | 21, 63, 138, 141, 299, 438 |
| Sau3AI | GATC | 3 cut(s) | 10, 42, 496 |
| Sau96I | GGNCC | 1 cut(s) | 492 |
| SchI | GAGTC | 1 cut(s) | 287 |
| ScrFI | CCNGG | 1 cut(s) | 110 |
| SduI | GDGCHC | 2 cut(s) | 340, 479 |
| SetI | ASST | 8 cut(s) | 18, 90, 118, 130, 195, 289, 400, 417 |
| SfaNI | GCATC | 2 cut(s) | 272, 544 |
| SfoI | GGCGCC | 1 cut(s) | 244 |
| SinI | GGWCC | 1 cut(s) | 492 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 447 |
| Sse9I | AATT | 1 cut(s) | 379 |
| SspDI | GGCGCC | 1 cut(s) | 242 |
| StyD4I | CCNGG | 1 cut(s) | 108 |
| StyI | CCWWGG | 1 cut(s) | 210 |
| TaaI | ACNGT | 1 cut(s) | 228 |
| TaiI | ACGT | 1 cut(s) | 130 |
| TaqI | TCGA | 1 cut(s) | 249 |
| TaqII | GACCGA | 1 cut(s) | 203 |
| TasI | AATT | 1 cut(s) | 379 |
| TauI | GCSGC | 6 cut(s) | 23, 65, 140, 143, 301, 440 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 1 cut(s) | 534 |
| TspRI | CASTG | 1 cut(s) | 534 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 252 |
| VpaK11BI | GGWCC | 1 cut(s) | 492 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 190, 217, 310 |