Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 749 |
| Acc36I | ACCTGC | 1 cut(s) | 456 |
| AccB1I | GGYRCC | 6 cut(s) | 251, 439, 1249, 1288, 1887, 2171 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 504, 2181 |
| AccBSI | CCGCTC | 7 cut(s) | 782, 1606, 1744, 1885, 1906, 2246, 2295 |
| AccI | GTMKAC | 2 cut(s) | 743, 1643 |
| AclWI | GGATC | 4 cut(s) | 448, 1381, 1394, 1972 |
| AcoI | YGGCCR | 2 cut(s) | 1875, 2275 |
| AcsI | RAATTY | 1 cut(s) | 2318 |
| AcuI | CTGAAG | 7 cut(s) | 326, 1080, 1376, 1524, 1651, 1967, 2511 |
| AcyI | GRCGYC | 5 cut(s) | 746, 1125, 1250, 2172, 2345 |
| AdeI | CACNNNGTG | 1 cut(s) | 885 |
| AfaI | GTAC | 9 cut(s) | 576, 674, 794, 932, 1381, 1525, 2102, 2242, 2407 |
| AfeI | AGCGCT | 1 cut(s) | 522 |
| AflIII | ACRYGT | 3 cut(s) | 501, 914, 1929 |
| AgsI | TTSAA | 5 cut(s) | 372, 586, 770, 1039, 2285 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 667, 2421 |
| AhlI | ACTAGT | 1 cut(s) | 74 |
| Alw21I | GWGCWC | 2 cut(s) | 84, 402 |
| Alw26I | GTCTC | 4 cut(s) | 878, 995, 2370, 2408 |
| Alw44I | GTGCAC | 2 cut(s) | 80, 398 |
| AlwI | GGATC | 4 cut(s) | 448, 1381, 1394, 1972 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1735 |
| Ama87I | CYCGRG | 4 cut(s) | 1490, 2296, 2394, 2433 |
| Aor51HI | AGCGCT | 1 cut(s) | 522 |
| ApaI | GGGCCC | 1 cut(s) | 1456 |
| ApaLI | GTGCAC | 2 cut(s) | 80, 398 |
| ApoI | RAATTY | 1 cut(s) | 2318 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1390, 1422 |
| AspS9I | GGNCC | 9 cut(s) | 385, 557, 1051, 1227, 1452, 1453, 1768, 1792, 1945 |
| AsuC2I | CCSGG | 6 cut(s) | 327, 883, 1450, 1949, 2395, 2396 |
| AsuII | TTCGAA | 1 cut(s) | 68 |
| AsuNHI | GCTAGC | 1 cut(s) | 517 |
| AvaI | CYCGRG | 4 cut(s) | 1490, 2296, 2394, 2433 |
| AvaII | GGWCC | 4 cut(s) | 557, 1051, 1227, 1945 |
| AxyI | CCTNAGG | 1 cut(s) | 656 |
| BaeGI | GKGCMC | 5 cut(s) | 84, 402, 497, 1456, 1686 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1122, 1155 |
| BalI | TGGCCA | 2 cut(s) | 1877, 2277 |
| BamHI | GGATCC | 1 cut(s) | 1386 |
| BanI | GGYRCC | 6 cut(s) | 251, 439, 1249, 1288, 1887, 2171 |
| BanII | GRGCYC | 4 cut(s) | 1148, 1456, 1701, 2293 |
| BauI | CACGAG | 4 cut(s) | 401, 804, 1160, 1703 |
| BbsI | GAAGAC | 1 cut(s) | 77 |
| Bbv12I | GWGCWC | 2 cut(s) | 84, 402 |
| BbvCI | CCTCAGC | 1 cut(s) | 2052 |
| BccI | CCATC | 9 cut(s) | 242, 782, 1156, 1334, 1432, 1658, 2183, 2221, 2396 |
| BceAI | ACGGC | 7 cut(s) | 278, 1131, 1295, 1327, 1676, 2046, 2439 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1826, 1860 |
| BciVI | GTATCC | 1 cut(s) | 214 |
| BcnI | CCSGG | 6 cut(s) | 327, 883, 1450, 1949, 2395, 2396 |
| BcoDI | GTCTC | 4 cut(s) | 878, 995, 2370, 2408 |
| BcuI | ACTAGT | 1 cut(s) | 74 |
| BfaI | CTAG | 4 cut(s) | 75, 164, 518, 1010 |
| BfmI | CTRYAG | 4 cut(s) | 449, 1512, 2073, 2159 |
| BfoI | RGCGCY | 9 cut(s) | 163, 524, 592, 638, 893, 1236, 1253, 1271, 2175 |
| BfuAI | ACCTGC | 1 cut(s) | 456 |
| BfuI | GTATCC | 1 cut(s) | 214 |
| BlpI | GCTNAGC | 2 cut(s) | 1142, 2337 |
| BmcAI | AGTACT | 1 cut(s) | 932 |
| Bme18I | GGWCC | 4 cut(s) | 557, 1051, 1227, 1945 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 667, 2421 |
| BmeT110I | CYCGRG | 4 cut(s) | 1490, 2296, 2394, 2433 |
| BmgT120I | GGNCC | 9 cut(s) | 385, 557, 1051, 1227, 1452, 1453, 1768, 1792, 1945 |
| BmrI | ACTGGG | 2 cut(s) | 2191, 2415 |
| BmsI | GCATC | 8 cut(s) | 330, 483, 840, 1834, 1843, 2145, 2187, 2476 |
| BmtI | GCTAGC | 1 cut(s) | 521 |
| BmuI | ACTGGG | 2 cut(s) | 2191, 2415 |
| BpiI | GAAGAC | 1 cut(s) | 77 |
| BpmI | CTGGAG | 7 cut(s) | 291, 1097, 1402, 1646, 1757, 1913, 2045 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1751, 2052 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1142, 2337 |
| Bpu14I | TTCGAA | 1 cut(s) | 68 |
| BpuMI | CCSGG | 6 cut(s) | 327, 883, 1450, 1949, 2395, 2396 |
| BsaHI | GRCGYC | 5 cut(s) | 746, 1125, 1250, 2172, 2345 |
| BsaI | GGTCTC | 1 cut(s) | 2408 |
| BsaWI | WCCGGW | 2 cut(s) | 318, 1094 |
| Bse118I | RCCGGY | 6 cut(s) | 300, 379, 974, 1229, 1270, 2200 |
| Bse1I | ACTGG | 5 cut(s) | 680, 867, 2186, 2238, 2421 |
| Bse21I | CCTNAGG | 1 cut(s) | 656 |
| Bse3DI | GCAATG | 1 cut(s) | 693 |
| BseGI | GGATG | 5 cut(s) | 253, 285, 774, 2213, 2407 |
| BseMI | GCAATG | 1 cut(s) | 693 |
| BseMII | CTCAG | 6 cut(s) | 631, 647, 1133, 1548, 2043, 2351 |
| BseNI | ACTGG | 5 cut(s) | 680, 867, 2186, 2238, 2421 |
| BseRI | GAGGAG | 5 cut(s) | 170, 374, 866, 1445, 1448 |
| BseSI | GKGCMC | 5 cut(s) | 84, 402, 497, 1456, 1686 |
| BseYI | CCCAGC | 4 cut(s) | 198, 1373, 1609, 2372 |
| BsgI | GTGCAG | 1 cut(s) | 2228 |
| Bsh1285I | CGRYCG | 4 cut(s) | 564, 1643, 1647, 2205 |
| BshNI | GGYRCC | 6 cut(s) | 251, 439, 1249, 1288, 1887, 2171 |
| BsiEI | CGRYCG | 4 cut(s) | 564, 1643, 1647, 2205 |
| BsiHKAI | GWGCWC | 2 cut(s) | 84, 402 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1490, 2296, 2394, 2433 |
| BslFI | GGGAC | 6 cut(s) | 674, 1240, 1793, 1918, 1958, 2409 |
| BsmAI | GTCTC | 4 cut(s) | 878, 995, 2370, 2408 |
| BsmBI | CGTCTC | 1 cut(s) | 878 |
| BsmFI | GGGAC | 6 cut(s) | 674, 1240, 1793, 1918, 1958, 2409 |
| Bso31I | GGTCTC | 1 cut(s) | 2408 |
| BsoBI | CYCGRG | 4 cut(s) | 1490, 2296, 2394, 2433 |
| Bsp119I | TTCGAA | 1 cut(s) | 68 |
| Bsp120I | GGGCCC | 1 cut(s) | 1452 |
| Bsp1286I | GDGCHC | 8 cut(s) | 84, 402, 497, 1148, 1456, 1686, 1701, 2293 |
| Bsp143I | GATC | 6 cut(s) | 56, 453, 645, 1386, 1977, 2013 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1142, 2337 |
| BspCNI | CTCAG | 6 cut(s) | 630, 648, 1134, 1549, 2044, 2350 |
| BspMAI | CTGCAG | 3 cut(s) | 453, 2077, 2163 |
| BspMI | ACCTGC | 1 cut(s) | 456 |
| BspOI | GCTAGC | 1 cut(s) | 521 |
| BspPI | GGATC | 4 cut(s) | 448, 1381, 1394, 1972 |
| BspT104I | TTCGAA | 1 cut(s) | 68 |
| BspT107I | GGYRCC | 6 cut(s) | 251, 439, 1249, 1288, 1887, 2171 |
| BspTNI | GGTCTC | 1 cut(s) | 2408 |
| BsrBI | CCGCTC | 7 cut(s) | 782, 1606, 1744, 1885, 1906, 2246, 2295 |
| BsrDI | GCAATG | 1 cut(s) | 693 |
| BsrFI | RCCGGY | 6 cut(s) | 300, 379, 974, 1229, 1270, 2200 |
| BsrI | ACTGG | 5 cut(s) | 680, 867, 2186, 2238, 2421 |
| BssAI | RCCGGY | 6 cut(s) | 300, 379, 974, 1229, 1270, 2200 |
| BssMI | GATC | 6 cut(s) | 56, 453, 645, 1386, 1977, 2013 |
| BssNI | GRCGYC | 5 cut(s) | 746, 1125, 1250, 2172, 2345 |
| BssSI | CACGAG | 4 cut(s) | 401, 804, 1160, 1703 |
| BssT1I | CCWWGG | 2 cut(s) | 1914, 2217 |
| Bst2BI | CACGAG | 4 cut(s) | 401, 804, 1160, 1703 |
| Bst4CI | ACNGT | 9 cut(s) | 106, 355, 565, 1055, 1213, 1303, 1406, 1574, 2410 |
| Bst6I | CTCTTC | 2 cut(s) | 807, 1422 |
| BstACI | GRCGYC | 5 cut(s) | 746, 1125, 1250, 2172, 2345 |
| BstBI | TTCGAA | 1 cut(s) | 68 |
| BstDEI | CTNAG | 8 cut(s) | 617, 656, 1142, 1557, 1751, 2052, 2140, 2337 |
| BstDSI | CCRYGG | 1 cut(s) | 1253 |
| BstEII | GGTNACC | 2 cut(s) | 1444, 1951 |
| BstF5I | GGATG | 5 cut(s) | 253, 285, 774, 2213, 2407 |
| BstH2I | RGCGCY | 9 cut(s) | 163, 524, 592, 638, 893, 1236, 1253, 1271, 2175 |
| BstKTI | GATC | 6 cut(s) | 59, 456, 648, 1389, 1980, 2016 |
| BstMAI | GTCTC | 4 cut(s) | 878, 995, 2370, 2408 |
| BstMBI | GATC | 6 cut(s) | 56, 453, 645, 1386, 1977, 2013 |
| BstMCI | CGRYCG | 4 cut(s) | 564, 1643, 1647, 2205 |
| BstNSI | RCATGY | 3 cut(s) | 505, 952, 1933 |
| BstPI | GGTNACC | 2 cut(s) | 1444, 1951 |
| BstSFI | CTRYAG | 4 cut(s) | 449, 1512, 2073, 2159 |
| BstSLI | GKGCMC | 5 cut(s) | 84, 402, 497, 1456, 1686 |
| BstV2I | GAAGAC | 1 cut(s) | 77 |
| BstX2I | RGATCY | 3 cut(s) | 453, 1386, 1977 |
| BstYI | RGATCY | 3 cut(s) | 453, 1386, 1977 |
| Bsu36I | CCTNAGG | 1 cut(s) | 656 |
| BsuI | GTATCC | 1 cut(s) | 214 |
| BtgI | CCRYGG | 1 cut(s) | 1253 |
| BtgZI | GCGATG | 2 cut(s) | 1312, 1857 |
| BtsCI | GGATG | 5 cut(s) | 253, 285, 774, 2213, 2407 |
| BtsI | GCAGTG | 4 cut(s) | 84, 699, 1053, 2250 |
| BtsIMutI | CAGTG | 6 cut(s) | 84, 102, 699, 1053, 2111, 2250 |
| BveI | ACCTGC | 1 cut(s) | 456 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1735 |
| Cfr10I | RCCGGY | 6 cut(s) | 300, 379, 974, 1229, 1270, 2200 |
| Cfr13I | GGNCC | 9 cut(s) | 385, 557, 1051, 1227, 1452, 1453, 1768, 1792, 1945 |
| Cfr42I | CCGCGG | 1 cut(s) | 1256 |
| Cfr9I | CCCGGG | 1 cut(s) | 2394 |
| CseI | GACGC | 6 cut(s) | 332, 1040, 1133, 1808, 2339, 2353 |
| Csp6I | GTAC | 9 cut(s) | 575, 673, 793, 931, 1380, 1524, 2101, 2241, 2406 |
| CviAII | CATG | 5 cut(s) | 152, 502, 949, 1930, 2279 |
| CviQI | GTAC | 9 cut(s) | 575, 673, 793, 931, 1380, 1524, 2101, 2241, 2406 |
| DdeI | CTNAG | 8 cut(s) | 617, 656, 1142, 1557, 1751, 2052, 2140, 2337 |
| DinI | GGCGCC | 2 cut(s) | 1251, 2173 |
| DpnI | GATC | 6 cut(s) | 58, 455, 647, 1388, 1979, 2015 |
| DpnII | GATC | 6 cut(s) | 56, 453, 645, 1386, 1977, 2013 |
| DraIII | CACNNNGTG | 1 cut(s) | 885 |
| DriI | GACNNNNNGTC | 2 cut(s) | 667, 2421 |
| EaeI | YGGCCR | 2 cut(s) | 1875, 2275 |
| Eam1104I | CTCTTC | 2 cut(s) | 807, 1422 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 667, 2421 |
| EarI | CTCTTC | 2 cut(s) | 807, 1422 |
| EciI | GGCGGA | 5 cut(s) | 336, 862, 1476, 2111, 2414 |
| Eco130I | CCWWGG | 2 cut(s) | 1914, 2217 |
| Eco24I | GRGCYC | 4 cut(s) | 1148, 1456, 1701, 2293 |
| Eco31I | GGTCTC | 1 cut(s) | 2408 |
| Eco47I | GGWCC | 4 cut(s) | 557, 1051, 1227, 1945 |
| Eco47III | AGCGCT | 1 cut(s) | 522 |
| Eco57I | CTGAAG | 7 cut(s) | 326, 1080, 1376, 1524, 1651, 1967, 2511 |
| Eco81I | CCTNAGG | 1 cut(s) | 656 |
| Eco88I | CYCGRG | 4 cut(s) | 1490, 2296, 2394, 2433 |
| Eco91I | GGTNACC | 2 cut(s) | 1444, 1951 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1452 |
| EcoO65I | GGTNACC | 2 cut(s) | 1444, 1951 |
| EcoRI | GAATTC | 1 cut(s) | 2318 |
| EcoT14I | CCWWGG | 2 cut(s) | 1914, 2217 |
| EcoT38I | GRGCYC | 4 cut(s) | 1148, 1456, 1701, 2293 |
| EgeI | GGCGCC | 2 cut(s) | 1251, 2173 |
| EheI | GGCGCC | 2 cut(s) | 1251, 2173 |
| ErhI | CCWWGG | 2 cut(s) | 1914, 2217 |
| Esp3I | CGTCTC | 1 cut(s) | 878 |
| FaeI | CATG | 5 cut(s) | 155, 505, 952, 1933, 2282 |
| FaqI | GGGAC | 6 cut(s) | 674, 1240, 1793, 1918, 1958, 2409 |
| FatI | CATG | 5 cut(s) | 151, 501, 948, 1929, 2278 |
| FblI | GTMKAC | 2 cut(s) | 743, 1643 |
| FokI | GGATG | 5 cut(s) | 260, 292, 761, 2200, 2414 |
| FriOI | GRGCYC | 4 cut(s) | 1148, 1456, 1701, 2293 |
| FspBI | CTAG | 4 cut(s) | 75, 164, 518, 1010 |
| GsaI | CCCAGC | 4 cut(s) | 202, 1377, 1613, 2376 |
| GsuI | CTGGAG | 7 cut(s) | 291, 1097, 1402, 1646, 1757, 1913, 2045 |
| HaeII | RGCGCY | 9 cut(s) | 163, 524, 592, 638, 893, 1236, 1253, 1271, 2175 |
| HgaI | GACGC | 6 cut(s) | 332, 1040, 1133, 1808, 2339, 2353 |
| Hin1I | GRCGYC | 5 cut(s) | 746, 1125, 1250, 2172, 2345 |
| Hin1II | CATG | 5 cut(s) | 155, 505, 952, 1933, 2282 |
| HincII | GTYRAC | 6 cut(s) | 262, 298, 613, 744, 1409, 1644 |
| HindII | GTYRAC | 6 cut(s) | 262, 298, 613, 744, 1409, 1644 |
| HindIII | AAGCTT | 3 cut(s) | 366, 2190, 2223 |
| Hpy188I | TCNGA | 4 cut(s) | 95, 779, 1153, 2443 |
| Hpy188III | TCNNGA | 5 cut(s) | 649, 806, 1039, 1625, 1774 |
| Hpy99I | CGWCG | 8 cut(s) | 57, 355, 748, 1034, 1348, 1574, 1824, 2510 |
| HpyCH4III | ACNGT | 9 cut(s) | 106, 355, 565, 1055, 1213, 1303, 1406, 1574, 2410 |
| HpyCH4IV | ACGT | 4 cut(s) | 746, 1686, 1872, 2508 |
| HpyCH4V | TGCA | 9 cut(s) | 82, 151, 400, 451, 693, 948, 2075, 2161, 2209 |
| HpyF3I | CTNAG | 8 cut(s) | 617, 656, 1142, 1557, 1751, 2052, 2140, 2337 |
| HpySE526I | ACGT | 4 cut(s) | 746, 1686, 1872, 2508 |
| Hsp92I | GRCGYC | 5 cut(s) | 746, 1125, 1250, 2172, 2345 |
| Hsp92II | CATG | 5 cut(s) | 155, 505, 952, 1933, 2282 |
| KasI | GGCGCC | 2 cut(s) | 1249, 2171 |
| KroI | GCCGGC | 2 cut(s) | 379, 1270 |
| KroNI | GCCGGC | 2 cut(s) | 381, 1272 |
| KspI | CCGCGG | 1 cut(s) | 1256 |
| Kzo9I | GATC | 6 cut(s) | 56, 453, 645, 1386, 1977, 2013 |
| LweI | GCATC | 8 cut(s) | 330, 483, 840, 1834, 1843, 2145, 2187, 2476 |
| MaeI | CTAG | 4 cut(s) | 75, 164, 518, 1010 |
| MaeII | ACGT | 4 cut(s) | 746, 1686, 1872, 2508 |
| MaeIII | GTNAC | 4 cut(s) | 424, 1321, 1444, 1951 |
| MalI | GATC | 6 cut(s) | 58, 455, 647, 1388, 1979, 2015 |
| MbiI | CCGCTC | 7 cut(s) | 782, 1606, 1744, 1885, 1906, 2246, 2295 |
| MboI | GATC | 6 cut(s) | 56, 453, 645, 1386, 1977, 2013 |
| MboII | GAAGA | 8 cut(s) | 58, 82, 349, 824, 1439, 1480, 1862, 1978 |
| MflI | RGATCY | 3 cut(s) | 453, 1386, 1977 |
| MhlI | GDGCHC | 8 cut(s) | 84, 402, 497, 1148, 1456, 1686, 1701, 2293 |
| MlsI | TGGCCA | 2 cut(s) | 1877, 2277 |
| MluCI | AATT | 4 cut(s) | 753, 1069, 2318, 2354 |
| MluI | ACGCGT | 1 cut(s) | 914 |
| MluNI | TGGCCA | 2 cut(s) | 1877, 2277 |
| Mly113I | GGCGCC | 2 cut(s) | 1250, 2172 |
| MlyI | GAGTC | 8 cut(s) | 236, 656, 749, 796, 997, 1409, 2000, 2447 |
| MmeI | TCCRAC | 2 cut(s) | 741, 1317 |
| Mox20I | TGGCCA | 2 cut(s) | 1877, 2277 |
| MreI | CGCCGGCG | 1 cut(s) | 1270 |
| MroNI | GCCGGC | 2 cut(s) | 379, 1270 |
| MscI | TGGCCA | 2 cut(s) | 1877, 2277 |
| MseI | TTAA | 2 cut(s) | 108, 756 |
| Msp20I | TGGCCA | 2 cut(s) | 1877, 2277 |
| NaeI | GCCGGC | 2 cut(s) | 381, 1272 |
| NarI | GGCGCC | 2 cut(s) | 1250, 2172 |
| NciI | CCSGG | 6 cut(s) | 327, 883, 1450, 1949, 2395, 2396 |
| NdeII | GATC | 6 cut(s) | 56, 453, 645, 1386, 1977, 2013 |
| NgoMIV | GCCGGC | 2 cut(s) | 379, 1270 |
| NheI | GCTAGC | 1 cut(s) | 517 |
| NlaIII | CATG | 5 cut(s) | 155, 505, 952, 1933, 2282 |
| NmeAIII | GCCGAG | 2 cut(s) | 1173, 2110 |
| NmuCI | GTSAC | 3 cut(s) | 424, 1444, 1951 |
| NspI | RCATGY | 3 cut(s) | 505, 952, 1933 |
| NspV | TTCGAA | 1 cut(s) | 68 |
| PaeI | GCATGC | 1 cut(s) | 952 |
| PciI | ACATGT | 2 cut(s) | 501, 1929 |
| PdiI | GCCGGC | 2 cut(s) | 381, 1272 |
| PfeI | GAWTC | 4 cut(s) | 49, 850, 1538, 1658 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 504, 2181 |
| PfoI | TCCNGGA | 1 cut(s) | 1074 |
| PleI | GAGTC | 8 cut(s) | 235, 656, 748, 796, 997, 1409, 1999, 2446 |
| PluTI | GGCGCC | 2 cut(s) | 1253, 2175 |
| PpsI | GAGTC | 8 cut(s) | 235, 656, 748, 796, 997, 1409, 1999, 2446 |
| PscI | ACATGT | 2 cut(s) | 501, 1929 |
| PspEI | GGTNACC | 2 cut(s) | 1444, 1951 |
| PspFI | CCCAGC | 4 cut(s) | 198, 1373, 1609, 2372 |
| PspOMI | GGGCCC | 1 cut(s) | 1452 |
| PspPI | GGNCC | 9 cut(s) | 385, 557, 1051, 1227, 1452, 1453, 1768, 1792, 1945 |
| PstI | CTGCAG | 3 cut(s) | 453, 2077, 2163 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1735 |
| PsuI | RGATCY | 3 cut(s) | 453, 1386, 1977 |
| PvuII | CAGCTG | 1 cut(s) | 395 |
| RsaI | GTAC | 9 cut(s) | 576, 674, 794, 932, 1381, 1525, 2102, 2242, 2407 |
| RsaNI | GTAC | 9 cut(s) | 575, 673, 793, 931, 1380, 1524, 2101, 2241, 2406 |
| SacII | CCGCGG | 1 cut(s) | 1256 |
| SalI | GTCGAC | 2 cut(s) | 742, 1642 |
| SaqAI | TTAA | 2 cut(s) | 108, 756 |
| Sau3AI | GATC | 6 cut(s) | 56, 453, 645, 1386, 1977, 2013 |
| Sau96I | GGNCC | 9 cut(s) | 385, 557, 1051, 1227, 1452, 1453, 1768, 1792, 1945 |
| ScaI | AGTACT | 1 cut(s) | 932 |
| SchI | GAGTC | 8 cut(s) | 236, 656, 749, 796, 997, 1409, 2000, 2447 |
| SduI | GDGCHC | 8 cut(s) | 84, 402, 497, 1148, 1456, 1686, 1701, 2293 |
| SfaNI | GCATC | 8 cut(s) | 330, 483, 840, 1834, 1843, 2145, 2187, 2476 |
| SfcI | CTRYAG | 4 cut(s) | 449, 1512, 2073, 2159 |
| SfoI | GGCGCC | 2 cut(s) | 1251, 2173 |
| Sfr303I | CCGCGG | 1 cut(s) | 1256 |
| SfuI | TTCGAA | 1 cut(s) | 68 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1270 |
| SgrBI | CCGCGG | 1 cut(s) | 1256 |
| SinI | GGWCC | 4 cut(s) | 557, 1051, 1227, 1945 |
| SmaI | CCCGGG | 1 cut(s) | 2396 |
| SpeI | ACTAGT | 1 cut(s) | 74 |
| SphI | GCATGC | 1 cut(s) | 952 |
| Sse9I | AATT | 4 cut(s) | 753, 1069, 2318, 2354 |
| SspDI | GGCGCC | 2 cut(s) | 1249, 2171 |
| SspI | AATATT | 1 cut(s) | 411 |
| SspMI | CTAG | 4 cut(s) | 75, 164, 518, 1010 |
| StyI | CCWWGG | 2 cut(s) | 1914, 2217 |
| TaaI | ACNGT | 9 cut(s) | 106, 355, 565, 1055, 1213, 1303, 1406, 1574, 2410 |
| TaiI | ACGT | 4 cut(s) | 749, 1689, 1875, 2511 |
| TaqII | GACCGA | 3 cut(s) | 574, 1629, 2132 |
| TasI | AATT | 4 cut(s) | 753, 1069, 2318, 2354 |
| TatI | WGTACW | 2 cut(s) | 930, 2100 |
| TfiI | GAWTC | 4 cut(s) | 49, 850, 1538, 1658 |
| Tru1I | TTAA | 2 cut(s) | 108, 756 |
| Tru9I | TTAA | 2 cut(s) | 108, 756 |
| TscAI | CASTG | 6 cut(s) | 91, 109, 706, 1053, 2118, 2257 |
| TseFI | GTSAC | 3 cut(s) | 424, 1444, 1951 |
| Tsp45I | GTSAC | 3 cut(s) | 424, 1444, 1951 |
| TspDTI | ATGAA | 1 cut(s) | 1530 |
| TspGWI | ACGGA | 3 cut(s) | 26, 860, 1328 |
| TspMI | CCCGGG | 1 cut(s) | 2394 |
| TspRI | CASTG | 6 cut(s) | 91, 109, 706, 1053, 2118, 2257 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 504, 2181 |
| VneI | GTGCAC | 2 cut(s) | 80, 398 |
| VpaK11BI | GGWCC | 4 cut(s) | 557, 1051, 1227, 1945 |
| XapI | RAATTY | 1 cut(s) | 2318 |
| XceI | RCATGY | 3 cut(s) | 505, 952, 1933 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1333, 1732 |
| XmaI | CCCGGG | 1 cut(s) | 2394 |
| XmiI | GTMKAC | 2 cut(s) | 743, 1643 |
| XspI | CTAG | 4 cut(s) | 75, 164, 518, 1010 |
| ZraI | GACGTC | 1 cut(s) | 747 |
| ZrmI | AGTACT | 1 cut(s) | 932 |