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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 26, 420, 740, 776 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 786 |
| AccBSI | CCGCTC | 1 cut(s) | 235 |
| AccII | CGCG | 3 cut(s) | 55, 507, 809 |
| AclWI | GGATC | 2 cut(s) | 552, 571 |
| AcoI | YGGCCR | 1 cut(s) | 143 |
| AcsI | RAATTY | 1 cut(s) | 215 |
| AcuI | CTGAAG | 3 cut(s) | 114, 566, 785 |
| AcyI | GRCGYC | 2 cut(s) | 777, 797 |
| AfaI | GTAC | 3 cut(s) | 42, 209, 707 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 148, 235, 376, 430, 483, 667, 786 |
| AgsI | TTSAA | 2 cut(s) | 541, 691 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 508 |
| AjnI | CCWGG | 1 cut(s) | 369 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 533, 565 |
| AleI | CACNNNNGTG | 1 cut(s) | 35 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 280, 312 |
| AluBI | AGCT | 5 cut(s) | 265, 327, 382, 403, 517 |
| AluI | AGCT | 5 cut(s) | 265, 327, 382, 403, 517 |
| Alw26I | GTCTC | 1 cut(s) | 95 |
| AlwI | GGATC | 2 cut(s) | 552, 571 |
| Ama87I | CYCGRG | 3 cut(s) | 33, 230, 491 |
| AoxI | GGCC | 5 cut(s) | 111, 138, 143, 735, 812 |
| ApaI | GGGCCC | 1 cut(s) | 115 |
| ApeKI | GCWGC | 5 cut(s) | 161, 203, 446, 459, 746 |
| ApoI | RAATTY | 1 cut(s) | 215 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 456, 488 |
| AspLEI | GCGC | 1 cut(s) | 779 |
| AspS9I | GGNCC | 4 cut(s) | 111, 112, 139, 487 |
| AsuC2I | CCSGG | 3 cut(s) | 34, 35, 142 |
| AsuHPI | GGTGA | 4 cut(s) | 163, 625, 641, 802 |
| AvaI | CYCGRG | 3 cut(s) | 33, 230, 491 |
| AvaII | GGWCC | 1 cut(s) | 487 |
| BaeGI | GKGCMC | 1 cut(s) | 115 |
| BanI | GGYRCC | 4 cut(s) | 26, 420, 740, 776 |
| BanII | GRGCYC | 1 cut(s) | 115 |
| BbvI | GCAGC | 5 cut(s) | 148, 190, 433, 471, 733 |
| BccI | CCATC | 3 cut(s) | 258, 485, 715 |
| BceAI | ACGGC | 4 cut(s) | 5, 74, 662, 799 |
| BciT130I | CCWGG | 1 cut(s) | 371 |
| BcnI | CCSGG | 3 cut(s) | 34, 35, 142 |
| BcoDI | GTCTC | 1 cut(s) | 95 |
| BfaI | CTAG | 2 cut(s) | 281, 835 |
| BfmI | CTRYAG | 1 cut(s) | 606 |
| BfoI | RGCGCY | 1 cut(s) | 780 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 683 |
| BglII | AGATCT | 1 cut(s) | 757 |
| Bme1390I | CCNGG | 4 cut(s) | 34, 35, 142, 371 |
| Bme18I | GGWCC | 1 cut(s) | 487 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 508 |
| BmeT110I | CYCGRG | 3 cut(s) | 33, 230, 491 |
| BmgT120I | GGNCC | 4 cut(s) | 111, 112, 139, 487 |
| BmiI | GGNNCC | 8 cut(s) | 28, 112, 113, 422, 488, 659, 742, 778 |
| BmrFI | CCNGG | 4 cut(s) | 34, 35, 142, 371 |
| BmrI | ACTGGG | 1 cut(s) | 796 |
| BmsI | GCATC | 3 cut(s) | 76, 349, 442 |
| BmuI | ACTGGG | 1 cut(s) | 796 |
| BpmI | CTGGAG | 1 cut(s) | 539 |
| Bpu10I | CCTNAGC | 1 cut(s) | 393 |
| BpuMI | CCSGG | 3 cut(s) | 34, 35, 142 |
| BsaBI | GATNNNNATC | 1 cut(s) | 575 |
| BsaHI | GRCGYC | 2 cut(s) | 777, 797 |
| BsaJI | CCNNGG | 2 cut(s) | 33, 678 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 148, 235, 376, 430, 483, 667, 786 |
| Bse118I | RCCGGY | 2 cut(s) | 164, 737 |
| Bse1I | ACTGG | 2 cut(s) | 313, 791 |
| Bse3DI | GCAATG | 1 cut(s) | 528 |
| Bse8I | GATNNNNATC | 1 cut(s) | 575 |
| BseBI | CCWGG | 1 cut(s) | 371 |
| BseDI | CCNNGG | 2 cut(s) | 33, 678 |
| BseGI | GGATG | 1 cut(s) | 88 |
| BseJI | GATNNNNATC | 1 cut(s) | 575 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 148, 235, 376, 430, 483, 667, 786 |
| BseMI | GCAATG | 1 cut(s) | 528 |
| BseNI | ACTGG | 2 cut(s) | 313, 791 |
| BseRI | GAGGAG | 2 cut(s) | 92, 670 |
| BseSI | GKGCMC | 1 cut(s) | 115 |
| BseXI | GCAGC | 5 cut(s) | 148, 190, 433, 471, 733 |
| BseYI | CCCAGC | 3 cut(s) | 382, 513, 639 |
| BsgI | GTGCAG | 1 cut(s) | 197 |
| Bsh1236I | CGCG | 3 cut(s) | 55, 507, 809 |
| Bsh1285I | CGRYCG | 2 cut(s) | 303, 505 |
| BshFI | GGCC | 5 cut(s) | 113, 140, 145, 737, 814 |
| BshNI | GGYRCC | 4 cut(s) | 26, 420, 740, 776 |
| BsiEI | CGRYCG | 2 cut(s) | 303, 505 |
| BsiHKCI | CYCGRG | 3 cut(s) | 33, 230, 491 |
| BsiSI | CCGG | 5 cut(s) | 34, 142, 165, 661, 738 |
| BsiWI | CGTACG | 1 cut(s) | 207 |
| BslFI | GGGAC | 3 cut(s) | 496, 500, 784 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 148, 235, 376, 430, 483, 667, 786 |
| BsmAI | GTCTC | 1 cut(s) | 95 |
| BsmFI | GGGAC | 3 cut(s) | 496, 500, 784 |
| BsnI | GGCC | 5 cut(s) | 113, 140, 145, 737, 814 |
| BsoBI | CYCGRG | 3 cut(s) | 33, 230, 491 |
| Bsp120I | GGGCCC | 1 cut(s) | 111 |
| Bsp1286I | GDGCHC | 1 cut(s) | 115 |
| Bsp143I | GATC | 5 cut(s) | 5, 187, 544, 576, 757 |
| BspANI | GGCC | 5 cut(s) | 113, 140, 145, 737, 814 |
| BspFNI | CGCG | 3 cut(s) | 55, 507, 809 |
| BspLI | GGNNCC | 8 cut(s) | 28, 112, 113, 422, 488, 659, 742, 778 |
| BspMAI | CTGCAG | 1 cut(s) | 610 |
| BspPI | GGATC | 2 cut(s) | 552, 571 |
| BspT107I | GGYRCC | 4 cut(s) | 26, 420, 740, 776 |
| BsrBI | CCGCTC | 1 cut(s) | 235 |
| BsrDI | GCAATG | 1 cut(s) | 528 |
| BsrFI | RCCGGY | 2 cut(s) | 164, 737 |
| BsrI | ACTGG | 2 cut(s) | 313, 791 |
| BssAI | RCCGGY | 2 cut(s) | 164, 737 |
| BssECI | CCNNGG | 2 cut(s) | 33, 678 |
| BssMI | GATC | 5 cut(s) | 5, 187, 544, 576, 757 |
| BssNI | GRCGYC | 2 cut(s) | 777, 797 |
| Bst2UI | CCWGG | 1 cut(s) | 371 |
| Bst4CI | ACNGT | 1 cut(s) | 472 |
| Bst6I | CTCTTC | 1 cut(s) | 251 |
| BstACI | GRCGYC | 2 cut(s) | 777, 797 |
| BstC8I | GCNNGC | 5 cut(s) | 115, 138, 405, 457, 714 |
| BstDEI | CTNAG | 2 cut(s) | 393, 702 |
| BstDSI | CCRYGG | 1 cut(s) | 678 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 428 |
| BstF5I | GGATG | 1 cut(s) | 88 |
| BstFNI | CGCG | 3 cut(s) | 55, 507, 809 |
| BstH2I | RGCGCY | 1 cut(s) | 780 |
| BstHHI | GCGC | 1 cut(s) | 779 |
| BstKTI | GATC | 5 cut(s) | 8, 190, 547, 579, 760 |
| BstMAI | GTCTC | 1 cut(s) | 95 |
| BstMBI | GATC | 5 cut(s) | 5, 187, 544, 576, 757 |
| BstMCI | CGRYCG | 2 cut(s) | 303, 505 |
| BstNI | CCWGG | 1 cut(s) | 371 |
| BstSCI | CCNGG | 4 cut(s) | 32, 33, 140, 369 |
| BstSFI | CTRYAG | 1 cut(s) | 606 |
| BstSLI | GKGCMC | 1 cut(s) | 115 |
| BstUI | CGCG | 3 cut(s) | 55, 507, 809 |
| BstV1I | GCAGC | 5 cut(s) | 148, 190, 433, 471, 733 |
| BstX2I | RGATCY | 2 cut(s) | 576, 757 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 37 |
| BstYI | RGATCY | 2 cut(s) | 576, 757 |
| BsuRI | GGCC | 5 cut(s) | 113, 140, 145, 737, 814 |
| BtgI | CCRYGG | 1 cut(s) | 678 |
| BtgZI | GCGATG | 1 cut(s) | 731 |
| BtsCI | GGATG | 1 cut(s) | 88 |
| BtsIMutI | CAGTG | 1 cut(s) | 69 |
| Cac8I | GCNNGC | 5 cut(s) | 115, 138, 405, 457, 714 |
| CfoI | GCGC | 1 cut(s) | 779 |
| Cfr10I | RCCGGY | 2 cut(s) | 164, 737 |
| Cfr13I | GGNCC | 4 cut(s) | 111, 112, 139, 487 |
| Cfr9I | CCCGGG | 1 cut(s) | 33 |
| CseI | GACGC | 3 cut(s) | 61, 452, 786 |
| Csp6I | GTAC | 3 cut(s) | 41, 208, 706 |
| CviAII | CATG | 2 cut(s) | 14, 359 |
| CviQI | GTAC | 3 cut(s) | 41, 208, 706 |
| DdeI | CTNAG | 2 cut(s) | 393, 702 |
| DinI | GGCGCC | 1 cut(s) | 778 |
| DpnI | GATC | 5 cut(s) | 7, 189, 546, 578, 759 |
| DpnII | GATC | 5 cut(s) | 5, 187, 544, 576, 757 |
| DriI | GACNNNNNGTC | 1 cut(s) | 508 |
| EaeI | YGGCCR | 1 cut(s) | 143 |
| Eam1104I | CTCTTC | 1 cut(s) | 251 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 508 |
| EarI | CTCTTC | 1 cut(s) | 251 |
| Eco24I | GRGCYC | 1 cut(s) | 115 |
| Eco47I | GGWCC | 1 cut(s) | 487 |
| Eco57I | CTGAAG | 3 cut(s) | 114, 566, 785 |
| Eco88I | CYCGRG | 3 cut(s) | 33, 230, 491 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 428 |
| EcoO109I | RGGNCCY | 2 cut(s) | 111, 487 |
| EcoRI | GAATTC | 1 cut(s) | 215 |
| EcoRII | CCWGG | 1 cut(s) | 369 |
| EcoT38I | GRGCYC | 1 cut(s) | 115 |
| EgeI | GGCGCC | 1 cut(s) | 778 |
| EheI | GGCGCC | 1 cut(s) | 778 |
| FaeI | CATG | 2 cut(s) | 17, 362 |
| FaiI | YATR | 2 cut(s) | 15, 360 |
| FaqI | GGGAC | 3 cut(s) | 496, 500, 784 |
| FatI | CATG | 2 cut(s) | 13, 358 |
| FauI | CCCGC | 5 cut(s) | 122, 228, 464, 636, 814 |
| FokI | GGATG | 1 cut(s) | 95 |
| FriOI | GRGCYC | 1 cut(s) | 115 |
| FspBI | CTAG | 2 cut(s) | 281, 835 |
| GlaI | GCGC | 1 cut(s) | 778 |
| GsaI | CCCAGC | 3 cut(s) | 386, 517, 643 |
| GsuI | CTGGAG | 1 cut(s) | 539 |
| HaeII | RGCGCY | 1 cut(s) | 780 |
| HaeIII | GGCC | 5 cut(s) | 113, 140, 145, 737, 814 |
| HapII | CCGG | 5 cut(s) | 34, 142, 165, 661, 738 |
| HgaI | GACGC | 3 cut(s) | 61, 452, 786 |
| HhaI | GCGC | 1 cut(s) | 779 |
| Hin1I | GRCGYC | 2 cut(s) | 777, 797 |
| Hin1II | CATG | 2 cut(s) | 17, 362 |
| Hin6I | GCGC | 1 cut(s) | 777 |
| HinP1I | GCGC | 1 cut(s) | 777 |
| HinfI | GANTC | 2 cut(s) | 194, 590 |
| HpaII | CCGG | 5 cut(s) | 34, 142, 165, 661, 738 |
| HphI | GGTGA | 4 cut(s) | 163, 625, 641, 802 |
| Hpy166II | GTNNAC | 1 cut(s) | 260 |
| Hpy188III | TCNNGA | 4 cut(s) | 191, 220, 481, 565 |
| Hpy8I | GTNNAC | 1 cut(s) | 260 |
| Hpy99I | CGWCG | 3 cut(s) | 60, 446, 820 |
| HpyAV | CCTTC | 7 cut(s) | 121, 278, 424, 535, 590, 727, 787 |
| HpyCH4III | ACNGT | 1 cut(s) | 472 |
| HpyCH4V | TGCA | 3 cut(s) | 46, 178, 608 |
| HpyF3I | CTNAG | 2 cut(s) | 393, 702 |
| Hsp92I | GRCGYC | 2 cut(s) | 777, 797 |
| Hsp92II | CATG | 2 cut(s) | 17, 362 |
| HspAI | GCGC | 1 cut(s) | 777 |
| KasI | GGCGCC | 1 cut(s) | 776 |
| Kzo9I | GATC | 5 cut(s) | 5, 187, 544, 576, 757 |
| LmnI | GCTCC | 4 cut(s) | 15, 379, 520, 657 |
| Lsp1109I | GCAGC | 5 cut(s) | 148, 190, 433, 471, 733 |
| LweI | GCATC | 3 cut(s) | 76, 349, 442 |
| MaeI | CTAG | 2 cut(s) | 281, 835 |
| MalI | GATC | 5 cut(s) | 7, 189, 546, 578, 759 |
| MbiI | CCGCTC | 1 cut(s) | 235 |
| MboI | GATC | 5 cut(s) | 5, 187, 544, 576, 757 |
| MboII | GAAGA | 3 cut(s) | 136, 238, 580 |
| MfeI | CAATTG | 1 cut(s) | 548 |
| MflI | RGATCY | 2 cut(s) | 576, 757 |
| MhlI | GDGCHC | 1 cut(s) | 115 |
| MluCI | AATT | 3 cut(s) | 215, 548, 751 |
| Mly113I | GGCGCC | 1 cut(s) | 777 |
| MmeI | TCCRAC | 1 cut(s) | 603 |
| MslI | CAYNNNNRTG | 2 cut(s) | 35, 255 |
| MspA1I | CMGCKG | 6 cut(s) | 92, 265, 517, 643, 746, 826 |
| MspI | CCGG | 5 cut(s) | 34, 142, 165, 661, 738 |
| MspR9I | CCNGG | 4 cut(s) | 34, 35, 142, 371 |
| MunI | CAATTG | 1 cut(s) | 548 |
| MvaI | CCWGG | 1 cut(s) | 371 |
| MvnI | CGCG | 3 cut(s) | 55, 507, 809 |
| NarI | GGCGCC | 1 cut(s) | 777 |
| NciI | CCSGG | 3 cut(s) | 34, 35, 142 |
| NdeII | GATC | 5 cut(s) | 5, 187, 544, 576, 757 |
| NlaIII | CATG | 2 cut(s) | 17, 362 |
| NlaIV | GGNNCC | 8 cut(s) | 28, 112, 113, 422, 488, 659, 742, 778 |
| NmeAIII | GCCGAG | 1 cut(s) | 308 |
| OliI | CACNNNNGTG | 1 cut(s) | 35 |
| PaeR7I | CTCGAG | 1 cut(s) | 491 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 203, 498 |
| PfeI | GAWTC | 2 cut(s) | 194, 590 |
| Pfl23II | CGTACG | 1 cut(s) | 207 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 786 |
| PluTI | GGCGCC | 1 cut(s) | 780 |
| PpuMI | RGGWCCY | 1 cut(s) | 487 |
| Psp5II | RGGWCCY | 1 cut(s) | 487 |
| Psp6I | CCWGG | 1 cut(s) | 369 |
| PspFI | CCCAGC | 3 cut(s) | 382, 513, 639 |
| PspGI | CCWGG | 1 cut(s) | 369 |
| PspLI | CGTACG | 1 cut(s) | 207 |
| PspN4I | GGNNCC | 8 cut(s) | 28, 112, 113, 422, 488, 659, 742, 778 |
| PspOMI | GGGCCC | 1 cut(s) | 111 |
| PspPI | GGNCC | 4 cut(s) | 111, 112, 139, 487 |
| PspPPI | RGGWCCY | 1 cut(s) | 487 |
| PspXI | VCTCGAGB | 1 cut(s) | 491 |
| PstI | CTGCAG | 1 cut(s) | 610 |
| PsuI | RGATCY | 2 cut(s) | 576, 757 |
| PvuII | CAGCTG | 2 cut(s) | 265, 517 |
| RsaI | GTAC | 3 cut(s) | 42, 209, 707 |
| RsaNI | GTAC | 3 cut(s) | 41, 208, 706 |
| RseI | CAYNNNNRTG | 2 cut(s) | 35, 255 |
| Sau3AI | GATC | 5 cut(s) | 5, 187, 544, 576, 757 |
| Sau96I | GGNCC | 4 cut(s) | 111, 112, 139, 487 |
| ScrFI | CCNGG | 4 cut(s) | 34, 35, 142, 371 |
| SduI | GDGCHC | 1 cut(s) | 115 |
| SfaNI | GCATC | 3 cut(s) | 76, 349, 442 |
| SfcI | CTRYAG | 1 cut(s) | 606 |
| SfoI | GGCGCC | 1 cut(s) | 778 |
| Sfr274I | CTCGAG | 1 cut(s) | 491 |
| SinI | GGWCC | 1 cut(s) | 487 |
| SlaI | CTCGAG | 1 cut(s) | 491 |
| SmaI | CCCGGG | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 35, 255 |
| SmlI | CTYRAG | 1 cut(s) | 491 |
| SmoI | CTYRAG | 1 cut(s) | 491 |
| Sse9I | AATT | 3 cut(s) | 215, 548, 751 |
| SspDI | GGCGCC | 1 cut(s) | 776 |
| SspMI | CTAG | 2 cut(s) | 281, 835 |
| StyD4I | CCNGG | 4 cut(s) | 32, 33, 140, 369 |
| TaaI | ACNGT | 1 cut(s) | 472 |
| TaqI | TCGA | 3 cut(s) | 299, 480, 492 |
| TaqII | GACCGA | 1 cut(s) | 239 |
| TasI | AATT | 3 cut(s) | 215, 548, 751 |
| TatI | WGTACW | 1 cut(s) | 705 |
| TauI | GCSGC | 7 cut(s) | 92, 557, 599, 677, 731, 746, 829 |
| TfiI | GAWTC | 2 cut(s) | 194, 590 |
| TscAI | CASTG | 1 cut(s) | 76 |
| TseI | GCWGC | 5 cut(s) | 161, 203, 446, 459, 746 |
| TspGWI | ACGGA | 1 cut(s) | 680 |
| TspMI | CCCGGG | 1 cut(s) | 33 |
| TspRI | CASTG | 1 cut(s) | 76 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 786 |
| VpaK11BI | GGWCC | 1 cut(s) | 487 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 428 |
| XapI | RAATTY | 1 cut(s) | 215 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 20 |
| XhoI | CTCGAG | 1 cut(s) | 491 |
| XmaI | CCCGGG | 1 cut(s) | 33 |
| XspI | CTAG | 2 cut(s) | 281, 835 |