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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1941 |
| Acc36I | ACCTGC | 1 cut(s) | 1218 |
| AccB1I | GGYRCC | 3 cut(s) | 800, 1558, 1654 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 126, 958, 1289, 1827 |
| AccBSI | CCGCTC | 1 cut(s) | 1808 |
| AccI | GTMKAC | 1 cut(s) | 1038 |
| AccII | CGCG | 1 cut(s) | 1328 |
| AccIII | TCCGGA | 2 cut(s) | 297, 999 |
| AclWI | GGATC | 6 cut(s) | 97, 587, 1181, 1340, 2001, 2020 |
| AcoI | YGGCCR | 5 cut(s) | 200, 237, 1578, 1814, 2004 |
| AcsI | RAATTY | 2 cut(s) | 385, 980 |
| AcvI | CACGTG | 2 cut(s) | 677, 857 |
| AcyI | GRCGYC | 3 cut(s) | 1559, 1655, 1938 |
| AfaI | GTAC | 1 cut(s) | 853 |
| AflIII | ACRYGT | 2 cut(s) | 854, 955 |
| AgeI | ACCGGT | 1 cut(s) | 180 |
| AgsI | TTSAA | 6 cut(s) | 74, 451, 467, 906, 1112, 1990 |
| AjnI | CCWGG | 7 cut(s) | 315, 506, 764, 784, 910, 1041, 1679 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1736, 1768 |
| AluBI | AGCT | 8 cut(s) | 70, 259, 284, 794, 1124, 1227, 1915, 1966 |
| AluI | AGCT | 8 cut(s) | 70, 259, 284, 794, 1124, 1227, 1915, 1966 |
| Alw21I | GWGCWC | 2 cut(s) | 153, 261 |
| Alw26I | GTCTC | 3 cut(s) | 348, 493, 1963 |
| AlwI | GGATC | 6 cut(s) | 97, 587, 1181, 1340, 2001, 2020 |
| Ama87I | CYCGRG | 4 cut(s) | 260, 490, 1146, 1635 |
| Aor13HI | TCCGGA | 2 cut(s) | 297, 999 |
| ApoI | RAATTY | 2 cut(s) | 385, 980 |
| AsiGI | ACCGGT | 1 cut(s) | 180 |
| AspLEI | GCGC | 6 cut(s) | 168, 977, 1330, 1522, 1561, 1657 |
| AspS9I | GGNCC | 6 cut(s) | 32, 1011, 1438, 1487, 1538, 1614 |
| AsuC2I | CCSGG | 3 cut(s) | 746, 1636, 1637 |
| AsuHPI | GGTGA | 3 cut(s) | 188, 800, 1469 |
| AsuNHI | GCTAGC | 2 cut(s) | 715, 734 |
| AvaI | CYCGRG | 4 cut(s) | 260, 490, 1146, 1635 |
| AvaII | GGWCC | 4 cut(s) | 32, 1011, 1438, 1538 |
| AxyI | CCTNAGG | 1 cut(s) | 1247 |
| BaeGI | GKGCMC | 1 cut(s) | 676 |
| BalI | TGGCCA | 1 cut(s) | 1580 |
| BanI | GGYRCC | 3 cut(s) | 800, 1558, 1654 |
| BanII | GRGCYC | 2 cut(s) | 261, 2056 |
| BauI | CACGAG | 1 cut(s) | 1905 |
| BbrPI | CACGTG | 2 cut(s) | 677, 857 |
| Bbv12I | GWGCWC | 2 cut(s) | 153, 261 |
| BccI | CCATC | 6 cut(s) | 21, 1418, 1419, 1454, 1625, 1790 |
| BceAI | ACGGC | 5 cut(s) | 36, 415, 834, 1801, 1829 |
| BciT130I | CCWGG | 7 cut(s) | 317, 508, 766, 786, 912, 1043, 1681 |
| BcnI | CCSGG | 3 cut(s) | 746, 1636, 1637 |
| BcoDI | GTCTC | 3 cut(s) | 348, 493, 1963 |
| BfmI | CTRYAG | 4 cut(s) | 78, 573, 614, 2030 |
| BfoI | RGCGCY | 5 cut(s) | 169, 978, 1523, 1562, 1658 |
| BfuAI | ACCTGC | 1 cut(s) | 1218 |
| BglII | AGATCT | 1 cut(s) | 1607 |
| BlpI | GCTNAGC | 1 cut(s) | 347 |
| Bme18I | GGWCC | 4 cut(s) | 32, 1011, 1438, 1538 |
| BmeT110I | CYCGRG | 4 cut(s) | 260, 490, 1146, 1635 |
| BmgT120I | GGNCC | 6 cut(s) | 32, 1011, 1438, 1487, 1538, 1614 |
| BmiI | GGNNCC | 6 cut(s) | 33, 742, 802, 1012, 1560, 1656 |
| BmsI | GCATC | 7 cut(s) | 673, 831, 993, 1077, 1386, 1882, 1891 |
| BmtI | GCTAGC | 2 cut(s) | 719, 738 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1816 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 345, 377, 1943, 1975 |
| BpmI | CTGGAG | 1 cut(s) | 787 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1380 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 347 |
| BpuMI | CCSGG | 3 cut(s) | 746, 1636, 1637 |
| BsaAI | YACGTR | 2 cut(s) | 677, 857 |
| BsaHI | GRCGYC | 3 cut(s) | 1559, 1655, 1938 |
| BsaI | GGTCTC | 1 cut(s) | 493 |
| BsaWI | WCCGGW | 5 cut(s) | 34, 180, 244, 297, 999 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1736, 1766 |
| Bse118I | RCCGGY | 2 cut(s) | 180, 191 |
| Bse21I | CCTNAGG | 1 cut(s) | 1247 |
| Bse3DI | GCAATG | 1 cut(s) | 1581 |
| BseAI | TCCGGA | 2 cut(s) | 297, 999 |
| BseBI | CCWGG | 7 cut(s) | 317, 508, 766, 786, 912, 1043, 1681 |
| BseGI | GGATG | 5 cut(s) | 688, 822, 1008, 1864, 1981 |
| BseMI | GCAATG | 1 cut(s) | 1581 |
| BseMII | CTCAG | 3 cut(s) | 1364, 1394, 1469 |
| BseRI | GAGGAG | 9 cut(s) | 102, 160, 175, 722, 769, 828, 1038, 1166, 2050 |
| BseSI | GKGCMC | 1 cut(s) | 676 |
| BseX3I | CGGCCG | 1 cut(s) | 1814 |
| BseYI | CCCAGC | 5 cut(s) | 143, 284, 1227, 1316, 1693 |
| Bsh1236I | CGCG | 1 cut(s) | 1328 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1473, 1817 |
| BshNI | GGYRCC | 3 cut(s) | 800, 1558, 1654 |
| BshTI | ACCGGT | 1 cut(s) | 180 |
| BsiEI | CGRYCG | 2 cut(s) | 1473, 1817 |
| BsiHKAI | GWGCWC | 2 cut(s) | 153, 261 |
| BsiHKCI | CYCGRG | 4 cut(s) | 260, 490, 1146, 1635 |
| BslFI | GGGAC | 2 cut(s) | 45, 1949 |
| BsmAI | GTCTC | 3 cut(s) | 348, 493, 1963 |
| BsmFI | GGGAC | 2 cut(s) | 45, 1949 |
| Bso31I | GGTCTC | 1 cut(s) | 493 |
| BsoBI | CYCGRG | 4 cut(s) | 260, 490, 1146, 1635 |
| Bsp1286I | GDGCHC | 4 cut(s) | 153, 261, 676, 2056 |
| Bsp13I | TCCGGA | 2 cut(s) | 297, 999 |
| Bsp143I | GATC | 7 cut(s) | 102, 592, 1173, 1345, 1607, 1993, 2025 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 347 |
| BspCNI | CTCAG | 3 cut(s) | 1363, 1393, 1470 |
| BspEI | TCCGGA | 2 cut(s) | 297, 999 |
| BspFNI | CGCG | 1 cut(s) | 1328 |
| BspLI | GGNNCC | 6 cut(s) | 33, 742, 802, 1012, 1560, 1656 |
| BspMAI | CTGCAG | 2 cut(s) | 82, 2034 |
| BspMI | ACCTGC | 1 cut(s) | 1218 |
| BspOI | GCTAGC | 2 cut(s) | 719, 738 |
| BspPI | GGATC | 6 cut(s) | 97, 587, 1181, 1340, 2001, 2020 |
| BspT107I | GGYRCC | 3 cut(s) | 800, 1558, 1654 |
| BspTNI | GGTCTC | 1 cut(s) | 493 |
| BsrBI | CCGCTC | 1 cut(s) | 1808 |
| BsrDI | GCAATG | 1 cut(s) | 1581 |
| BsrFI | RCCGGY | 2 cut(s) | 180, 191 |
| BssAI | RCCGGY | 2 cut(s) | 180, 191 |
| BssMI | GATC | 7 cut(s) | 102, 592, 1173, 1345, 1607, 1993, 2025 |
| BssNI | GRCGYC | 3 cut(s) | 1559, 1655, 1938 |
| BssSI | CACGAG | 1 cut(s) | 1905 |
| BssT1I | CCWWGG | 6 cut(s) | 135, 872, 1842, 1878, 2007, 2048 |
| Bst2BI | CACGAG | 1 cut(s) | 1905 |
| Bst2UI | CCWGG | 7 cut(s) | 317, 508, 766, 786, 912, 1043, 1681 |
| Bst4CI | ACNGT | 5 cut(s) | 588, 1019, 1342, 1669, 1803 |
| Bst6I | CTCTTC | 2 cut(s) | 245, 1763 |
| BstACI | GRCGYC | 3 cut(s) | 1559, 1655, 1938 |
| BstBAI | YACGTR | 2 cut(s) | 677, 857 |
| BstC8I | GCNNGC | 8 cut(s) | 189, 567, 717, 736, 1126, 1323, 1430, 1700 |
| BstDEI | CTNAG | 5 cut(s) | 347, 1247, 1350, 1380, 1478 |
| BstDSI | CCRYGG | 3 cut(s) | 106, 1434, 1668 |
| BstEII | GGTNACC | 1 cut(s) | 176 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1877 |
| BstF5I | GGATG | 5 cut(s) | 688, 822, 1008, 1864, 1981 |
| BstFNI | CGCG | 1 cut(s) | 1328 |
| BstH2I | RGCGCY | 5 cut(s) | 169, 978, 1523, 1562, 1658 |
| BstHHI | GCGC | 6 cut(s) | 168, 977, 1330, 1522, 1561, 1657 |
| BstKTI | GATC | 7 cut(s) | 105, 595, 1176, 1348, 1610, 1996, 2028 |
| BstMAI | GTCTC | 3 cut(s) | 348, 493, 1963 |
| BstMBI | GATC | 7 cut(s) | 102, 592, 1173, 1345, 1607, 1993, 2025 |
| BstMCI | CGRYCG | 2 cut(s) | 1473, 1817 |
| BstNI | CCWGG | 7 cut(s) | 317, 508, 766, 786, 912, 1043, 1681 |
| BstNSI | RCATGY | 2 cut(s) | 959, 1664 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1816 |
| BstPI | GGTNACC | 1 cut(s) | 176 |
| BstSFI | CTRYAG | 4 cut(s) | 78, 573, 614, 2030 |
| BstSLI | GKGCMC | 1 cut(s) | 676 |
| BstUI | CGCG | 1 cut(s) | 1328 |
| BstX2I | RGATCY | 3 cut(s) | 1345, 1607, 2025 |
| BstYI | RGATCY | 3 cut(s) | 1345, 1607, 2025 |
| BstZI | CGGCCG | 1 cut(s) | 1814 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1247 |
| BtgI | CCRYGG | 3 cut(s) | 106, 1434, 1668 |
| BtgZI | GCGATG | 2 cut(s) | 1603, 1905 |
| BtsCI | GGATG | 5 cut(s) | 688, 822, 1008, 1864, 1981 |
| BtsI | GCAGTG | 3 cut(s) | 502, 1163, 1368 |
| BtsIMutI | CAGTG | 5 cut(s) | 502, 584, 1024, 1163, 1368 |
| BveI | ACCTGC | 1 cut(s) | 1218 |
| Cac8I | GCNNGC | 8 cut(s) | 189, 567, 717, 736, 1126, 1323, 1430, 1700 |
| CfoI | GCGC | 6 cut(s) | 168, 977, 1330, 1522, 1561, 1657 |
| Cfr10I | RCCGGY | 2 cut(s) | 180, 191 |
| Cfr13I | GGNCC | 6 cut(s) | 32, 1011, 1438, 1487, 1538, 1614 |
| Cfr9I | CCCGGG | 1 cut(s) | 1635 |
| CseI | GACGC | 2 cut(s) | 548, 1434 |
| Csp6I | GTAC | 1 cut(s) | 852 |
| CspAI | ACCGGT | 1 cut(s) | 180 |
| CviAII | CATG | 6 cut(s) | 704, 956, 1034, 1165, 1661, 1984 |
| CviQI | GTAC | 1 cut(s) | 852 |
| DdeI | CTNAG | 5 cut(s) | 347, 1247, 1350, 1380, 1478 |
| DinI | GGCGCC | 2 cut(s) | 1560, 1656 |
| DpnI | GATC | 7 cut(s) | 104, 594, 1175, 1347, 1609, 1995, 2027 |
| DpnII | GATC | 7 cut(s) | 102, 592, 1173, 1345, 1607, 1993, 2025 |
| EaeI | YGGCCR | 5 cut(s) | 200, 237, 1578, 1814, 2004 |
| EagI | CGGCCG | 1 cut(s) | 1814 |
| Eam1104I | CTCTTC | 2 cut(s) | 245, 1763 |
| EarI | CTCTTC | 2 cut(s) | 245, 1763 |
| EciI | GGCGGA | 6 cut(s) | 417, 548, 552, 858, 1269, 1871 |
| Ecl136II | GAGCTC | 1 cut(s) | 259 |
| EclXI | CGGCCG | 1 cut(s) | 1814 |
| Eco130I | CCWWGG | 6 cut(s) | 135, 872, 1842, 1878, 2007, 2048 |
| Eco24I | GRGCYC | 2 cut(s) | 261, 2056 |
| Eco31I | GGTCTC | 1 cut(s) | 493 |
| Eco32I | GATATC | 1 cut(s) | 474 |
| Eco47I | GGWCC | 4 cut(s) | 32, 1011, 1438, 1538 |
| Eco52I | CGGCCG | 1 cut(s) | 1814 |
| Eco53kI | GAGCTC | 1 cut(s) | 259 |
| Eco72I | CACGTG | 2 cut(s) | 677, 857 |
| Eco81I | CCTNAGG | 1 cut(s) | 1247 |
| Eco88I | CYCGRG | 4 cut(s) | 260, 490, 1146, 1635 |
| Eco91I | GGTNACC | 1 cut(s) | 176 |
| EcoICRI | GAGCTC | 1 cut(s) | 259 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1877 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1487 |
| EcoO65I | GGTNACC | 1 cut(s) | 176 |
| EcoRI | GAATTC | 1 cut(s) | 980 |
| EcoRII | CCWGG | 7 cut(s) | 315, 506, 764, 784, 910, 1041, 1679 |
| EcoRV | GATATC | 1 cut(s) | 474 |
| EcoT14I | CCWWGG | 6 cut(s) | 135, 872, 1842, 1878, 2007, 2048 |
| EcoT22I | ATGCAT | 1 cut(s) | 1092 |
| EcoT38I | GRGCYC | 2 cut(s) | 261, 2056 |
| EgeI | GGCGCC | 2 cut(s) | 1560, 1656 |
| EheI | GGCGCC | 2 cut(s) | 1560, 1656 |
| ErhI | CCWWGG | 6 cut(s) | 135, 872, 1842, 1878, 2007, 2048 |
| FaeI | CATG | 6 cut(s) | 707, 959, 1037, 1168, 1664, 1987 |
| FaqI | GGGAC | 2 cut(s) | 45, 1949 |
| FatI | CATG | 6 cut(s) | 703, 955, 1033, 1164, 1660, 1983 |
| FauI | CCCGC | 4 cut(s) | 742, 1457, 1579, 1691 |
| FblI | GTMKAC | 1 cut(s) | 1038 |
| FokI | GGATG | 5 cut(s) | 695, 809, 1015, 1871, 1988 |
| FriOI | GRGCYC | 2 cut(s) | 261, 2056 |
| GlaI | GCGC | 6 cut(s) | 167, 976, 1329, 1521, 1560, 1656 |
| GsaI | CCCAGC | 5 cut(s) | 147, 288, 1231, 1320, 1697 |
| GsuI | CTGGAG | 1 cut(s) | 787 |
| HaeII | RGCGCY | 5 cut(s) | 169, 978, 1523, 1562, 1658 |
| HgaI | GACGC | 2 cut(s) | 548, 1434 |
| HhaI | GCGC | 6 cut(s) | 168, 977, 1330, 1522, 1561, 1657 |
| Hin1I | GRCGYC | 3 cut(s) | 1559, 1655, 1938 |
| Hin1II | CATG | 6 cut(s) | 707, 959, 1037, 1168, 1664, 1987 |
| Hin6I | GCGC | 6 cut(s) | 166, 975, 1328, 1520, 1559, 1655 |
| HinP1I | GCGC | 6 cut(s) | 166, 975, 1328, 1520, 1559, 1655 |
| HincII | GTYRAC | 4 cut(s) | 421, 1243, 1254, 1449 |
| HindII | GTYRAC | 4 cut(s) | 421, 1243, 1254, 1449 |
| HindIII | AAGCTT | 1 cut(s) | 68 |
| HphI | GGTGA | 3 cut(s) | 188, 800, 1469 |
| Hpy166II | GTNNAC | 8 cut(s) | 421, 854, 1039, 1243, 1254, 1449, 1538, 2042 |
| Hpy188III | TCNNGA | 5 cut(s) | 213, 298, 490, 652, 1000 |
| Hpy8I | GTNNAC | 8 cut(s) | 421, 854, 1039, 1243, 1254, 1449, 1538, 2042 |
| Hpy99I | CGWCG | 5 cut(s) | 22, 214, 812, 1815, 1925 |
| HpyAV | CCTTC | 8 cut(s) | 24, 215, 222, 262, 912, 1448, 1546, 1984 |
| HpyCH4III | ACNGT | 5 cut(s) | 588, 1019, 1342, 1669, 1803 |
| HpyCH4IV | ACGT | 3 cut(s) | 676, 856, 1938 |
| HpyCH4V | TGCA | 6 cut(s) | 80, 369, 460, 1006, 1090, 2032 |
| HpyF3I | CTNAG | 5 cut(s) | 347, 1247, 1350, 1380, 1478 |
| HpySE526I | ACGT | 3 cut(s) | 676, 856, 1938 |
| Hsp92I | GRCGYC | 3 cut(s) | 1559, 1655, 1938 |
| Hsp92II | CATG | 6 cut(s) | 707, 959, 1037, 1168, 1664, 1987 |
| HspAI | GCGC | 6 cut(s) | 166, 975, 1328, 1520, 1559, 1655 |
| KasI | GGCGCC | 2 cut(s) | 1558, 1654 |
| Kpn2I | TCCGGA | 2 cut(s) | 297, 999 |
| Kzo9I | GATC | 7 cut(s) | 102, 592, 1173, 1345, 1607, 1993, 2025 |
| LmnI | GCTCC | 2 cut(s) | 173, 1153 |
| LweI | GCATC | 7 cut(s) | 673, 831, 993, 1077, 1386, 1882, 1891 |
| MaeII | ACGT | 3 cut(s) | 676, 856, 1938 |
| MaeIII | GTNAC | 4 cut(s) | 176, 634, 878, 1663 |
| MalI | GATC | 7 cut(s) | 104, 594, 1175, 1347, 1609, 1995, 2027 |
| MbiI | CCGCTC | 1 cut(s) | 1808 |
| MboI | GATC | 7 cut(s) | 102, 592, 1173, 1345, 1607, 1993, 2025 |
| MboII | GAAGA | 4 cut(s) | 237, 262, 857, 1750 |
| MflI | RGATCY | 3 cut(s) | 1345, 1607, 2025 |
| MhlI | GDGCHC | 4 cut(s) | 153, 261, 676, 2056 |
| MlsI | TGGCCA | 1 cut(s) | 1580 |
| MluCI | AATT | 2 cut(s) | 385, 980 |
| MluNI | TGGCCA | 1 cut(s) | 1580 |
| Mly113I | GGCGCC | 2 cut(s) | 1559, 1655 |
| MlyI | GAGTC | 5 cut(s) | 545, 664, 1375, 1733, 2047 |
| MmeI | TCCRAC | 4 cut(s) | 25, 140, 1038, 1083 |
| Mox20I | TGGCCA | 1 cut(s) | 1580 |
| Mph1103I | ATGCAT | 1 cut(s) | 1092 |
| MroI | TCCGGA | 2 cut(s) | 297, 999 |
| MscI | TGGCCA | 1 cut(s) | 1580 |
| MseI | TTAA | 3 cut(s) | 696, 1098, 1137 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1416 |
| Msp20I | TGGCCA | 1 cut(s) | 1580 |
| MspA1I | CMGCKG | 3 cut(s) | 395, 890, 1316 |
| MvaI | CCWGG | 7 cut(s) | 317, 508, 766, 786, 912, 1043, 1681 |
| MvnI | CGCG | 1 cut(s) | 1328 |
| NarI | GGCGCC | 2 cut(s) | 1559, 1655 |
| NciI | CCSGG | 3 cut(s) | 746, 1636, 1637 |
| NdeII | GATC | 7 cut(s) | 102, 592, 1173, 1345, 1607, 1993, 2025 |
| NheI | GCTAGC | 2 cut(s) | 715, 734 |
| NlaIII | CATG | 6 cut(s) | 707, 959, 1037, 1168, 1664, 1987 |
| NlaIV | GGNNCC | 6 cut(s) | 33, 742, 802, 1012, 1560, 1656 |
| NmuCI | GTSAC | 2 cut(s) | 176, 1663 |
| NsiI | ATGCAT | 1 cut(s) | 1092 |
| NspI | RCATGY | 2 cut(s) | 959, 1664 |
| PaeR7I | CTCGAG | 1 cut(s) | 490 |
| PasI | CCCWGGG | 1 cut(s) | 316 |
| PciI | ACATGT | 1 cut(s) | 955 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 126, 958, 1289, 1827 |
| PinAI | ACCGGT | 1 cut(s) | 180 |
| PleI | GAGTC | 5 cut(s) | 545, 663, 1374, 1733, 2046 |
| PluTI | GGCGCC | 2 cut(s) | 1562, 1658 |
| PmaCI | CACGTG | 2 cut(s) | 677, 857 |
| PmlI | CACGTG | 2 cut(s) | 677, 857 |
| PpsI | GAGTC | 5 cut(s) | 545, 663, 1374, 1733, 2046 |
| Ppu21I | YACGTR | 2 cut(s) | 677, 857 |
| PscI | ACATGT | 1 cut(s) | 955 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1816 |
| Psp124BI | GAGCTC | 1 cut(s) | 261 |
| Psp6I | CCWGG | 7 cut(s) | 315, 506, 764, 784, 910, 1041, 1679 |
| PspCI | CACGTG | 2 cut(s) | 677, 857 |
| PspEI | GGTNACC | 1 cut(s) | 176 |
| PspFI | CCCAGC | 5 cut(s) | 143, 284, 1227, 1316, 1693 |
| PspGI | CCWGG | 7 cut(s) | 315, 506, 764, 784, 910, 1041, 1679 |
| PspN4I | GGNNCC | 6 cut(s) | 33, 742, 802, 1012, 1560, 1656 |
| PspPI | GGNCC | 6 cut(s) | 32, 1011, 1438, 1487, 1538, 1614 |
| PstI | CTGCAG | 2 cut(s) | 82, 2034 |
| PsuI | RGATCY | 3 cut(s) | 1345, 1607, 2025 |
| RsaI | GTAC | 1 cut(s) | 853 |
| RsaNI | GTAC | 1 cut(s) | 852 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1416 |
| SacI | GAGCTC | 1 cut(s) | 261 |
| SaqAI | TTAA | 3 cut(s) | 696, 1098, 1137 |
| Sau3AI | GATC | 7 cut(s) | 102, 592, 1173, 1345, 1607, 1993, 2025 |
| Sau96I | GGNCC | 6 cut(s) | 32, 1011, 1438, 1487, 1538, 1614 |
| SchI | GAGTC | 5 cut(s) | 545, 664, 1375, 1733, 2047 |
| SduI | GDGCHC | 4 cut(s) | 153, 261, 676, 2056 |
| SfaNI | GCATC | 7 cut(s) | 673, 831, 993, 1077, 1386, 1882, 1891 |
| SfcI | CTRYAG | 4 cut(s) | 78, 573, 614, 2030 |
| SfoI | GGCGCC | 2 cut(s) | 1560, 1656 |
| Sfr274I | CTCGAG | 1 cut(s) | 490 |
| SinI | GGWCC | 4 cut(s) | 32, 1011, 1438, 1538 |
| SlaI | CTCGAG | 1 cut(s) | 490 |
| SmaI | CCCGGG | 1 cut(s) | 1637 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1416 |
| SmlI | CTYRAG | 1 cut(s) | 490 |
| SmoI | CTYRAG | 1 cut(s) | 490 |
| Sse9I | AATT | 2 cut(s) | 385, 980 |
| SspDI | GGCGCC | 2 cut(s) | 1558, 1654 |
| SstI | GAGCTC | 1 cut(s) | 261 |
| StyI | CCWWGG | 6 cut(s) | 135, 872, 1842, 1878, 2007, 2048 |
| TaaI | ACNGT | 5 cut(s) | 588, 1019, 1342, 1669, 1803 |
| TaiI | ACGT | 3 cut(s) | 679, 859, 1941 |
| TaqI | TCGA | 7 cut(s) | 17, 101, 219, 491, 606, 776, 1810 |
| TaqII | GACCGA | 1 cut(s) | 1751 |
| TasI | AATT | 2 cut(s) | 385, 980 |
| Tru1I | TTAA | 3 cut(s) | 696, 1098, 1137 |
| Tru9I | TTAA | 3 cut(s) | 696, 1098, 1137 |
| TscAI | CASTG | 5 cut(s) | 502, 591, 1024, 1163, 1368 |
| TseFI | GTSAC | 2 cut(s) | 176, 1663 |
| Tsp45I | GTSAC | 2 cut(s) | 176, 1663 |
| TspDTI | ATGAA | 3 cut(s) | 17, 389, 1698 |
| TspGWI | ACGGA | 5 cut(s) | 95, 466, 825, 1186, 1359 |
| TspMI | CCCGGG | 1 cut(s) | 1635 |
| TspRI | CASTG | 5 cut(s) | 502, 591, 1024, 1163, 1368 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 126, 958, 1289, 1827 |
| VpaK11BI | GGWCC | 4 cut(s) | 32, 1011, 1438, 1538 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1877 |
| XapI | RAATTY | 2 cut(s) | 385, 980 |
| XceI | RCATGY | 2 cut(s) | 959, 1664 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1412, 1849 |
| XhoI | CTCGAG | 1 cut(s) | 490 |
| XmaI | CCCGGG | 1 cut(s) | 1635 |
| XmiI | GTMKAC | 1 cut(s) | 1038 |
| ZraI | GACGTC | 1 cut(s) | 1939 |
| Zsp2I | ATGCAT | 1 cut(s) | 1092 |