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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 105 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 102 |
| AccII | CGCG | 1 cut(s) | 78 |
| AciI | CCGC | 6 cut(s) | 76, 78, 216, 227, 293, 319 |
| AcuI | CTGAAG | 1 cut(s) | 179 |
| AcyI | GRCGYC | 1 cut(s) | 40 |
| AfaI | GTAC | 1 cut(s) | 325 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 49, 102, 285 |
| AgsI | TTSAA | 3 cut(s) | 88, 101, 309 |
| AjnI | CCWGG | 1 cut(s) | 257 |
| AluBI | AGCT | 4 cut(s) | 22, 136, 152, 176 |
| AluI | AGCT | 4 cut(s) | 22, 136, 152, 176 |
| Alw26I | GTCTC | 2 cut(s) | 138, 295 |
| Ama87I | CYCGRG | 1 cut(s) | 110 |
| AoxI | GGCC | 1 cut(s) | 9 |
| ApeKI | GCWGC | 1 cut(s) | 289 |
| AspS9I | GGNCC | 1 cut(s) | 163 |
| AsuHPI | GGTGA | 1 cut(s) | 244 |
| AvaI | CYCGRG | 1 cut(s) | 110 |
| AvaII | GGWCC | 1 cut(s) | 163 |
| BanI | GGYRCC | 1 cut(s) | 105 |
| BbvI | GCAGC | 1 cut(s) | 276 |
| BciT130I | CCWGG | 1 cut(s) | 259 |
| BcoDI | GTCTC | 2 cut(s) | 138, 295 |
| BfaI | CTAG | 1 cut(s) | 137 |
| BisI | GCNGC | 4 cut(s) | 79, 216, 290, 293 |
| BlsI | GCNGC | 4 cut(s) | 80, 217, 291, 294 |
| Bme1390I | CCNGG | 1 cut(s) | 259 |
| Bme18I | GGWCC | 1 cut(s) | 163 |
| BmeT110I | CYCGRG | 1 cut(s) | 110 |
| BmgT120I | GGNCC | 1 cut(s) | 163 |
| BmiI | GGNNCC | 1 cut(s) | 107 |
| BmrFI | CCNGG | 1 cut(s) | 259 |
| BmsI | GCATC | 1 cut(s) | 61 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 263, 295, 265, 297 |
| Bpu10I | CCTNAGC | 1 cut(s) | 177 |
| BsaHI | GRCGYC | 1 cut(s) | 40 |
| BsaJI | CCNNGG | 2 cut(s) | 48, 76 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 113, 143 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 49, 102, 285 |
| Bse1I | ACTGG | 1 cut(s) | 174 |
| BseBI | CCWGG | 1 cut(s) | 259 |
| BseDI | CCNNGG | 2 cut(s) | 48, 76 |
| BseGI | GGATG | 1 cut(s) | 76 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 49, 102, 285 |
| BseNI | ACTGG | 1 cut(s) | 174 |
| BseXI | GCAGC | 1 cut(s) | 276 |
| Bsh1236I | CGCG | 1 cut(s) | 78 |
| BshFI | GGCC | 1 cut(s) | 11 |
| BshNI | GGYRCC | 1 cut(s) | 105 |
| BsiHKCI | CYCGRG | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 49, 102, 285 |
| BsmAI | GTCTC | 2 cut(s) | 138, 295 |
| BsnI | GGCC | 1 cut(s) | 11 |
| BsoBI | CYCGRG | 1 cut(s) | 110 |
| Bsp1407I | TGTACA | 1 cut(s) | 323 |
| BspACI | CCGC | 6 cut(s) | 76, 78, 216, 227, 293, 319 |
| BspANI | GGCC | 1 cut(s) | 11 |
| BspFNI | CGCG | 1 cut(s) | 78 |
| BspLI | GGNNCC | 1 cut(s) | 107 |
| BspT107I | GGYRCC | 1 cut(s) | 105 |
| BsrGI | TGTACA | 1 cut(s) | 323 |
| BsrI | ACTGG | 1 cut(s) | 174 |
| BssECI | CCNNGG | 2 cut(s) | 48, 76 |
| BssNI | GRCGYC | 1 cut(s) | 40 |
| BssT1I | CCWWGG | 1 cut(s) | 48 |
| Bst2UI | CCWGG | 1 cut(s) | 259 |
| BstACI | GRCGYC | 1 cut(s) | 40 |
| BstAUI | TGTACA | 1 cut(s) | 323 |
| BstC8I | GCNNGC | 2 cut(s) | 24, 76 |
| BstDEI | CTNAG | 2 cut(s) | 177, 183 |
| BstDSI | CCRYGG | 1 cut(s) | 76 |
| BstEII | GGTNACC | 1 cut(s) | 253 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 47, 283 |
| BstF5I | GGATG | 1 cut(s) | 76 |
| BstFNI | CGCG | 1 cut(s) | 78 |
| BstMAI | GTCTC | 2 cut(s) | 138, 295 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 224 |
| BstNI | CCWGG | 1 cut(s) | 259 |
| BstPI | GGTNACC | 1 cut(s) | 253 |
| BstSCI | CCNGG | 1 cut(s) | 257 |
| BstUI | CGCG | 1 cut(s) | 78 |
| BstV1I | GCAGC | 1 cut(s) | 276 |
| BsuRI | GGCC | 1 cut(s) | 11 |
| BtgI | CCRYGG | 1 cut(s) | 76 |
| BtsCI | GGATG | 1 cut(s) | 76 |
| Cac8I | GCNNGC | 2 cut(s) | 24, 76 |
| Cfr13I | GGNCC | 1 cut(s) | 163 |
| Cfr42I | CCGCGG | 1 cut(s) | 79 |
| CseI | GACGC | 1 cut(s) | 48 |
| Csp6I | GTAC | 1 cut(s) | 324 |
| CviJI | RGCY | 9 cut(s) | 11, 22, 136, 152, 176, 182, 262, 278, 289 |
| CviKI_1 | RGCY | 9 cut(s) | 11, 22, 136, 152, 176, 182, 262, 278, 289 |
| CviQI | GTAC | 1 cut(s) | 324 |
| DdeI | CTNAG | 2 cut(s) | 177, 183 |
| Eco130I | CCWWGG | 1 cut(s) | 48 |
| Eco47I | GGWCC | 1 cut(s) | 163 |
| Eco57I | CTGAAG | 1 cut(s) | 179 |
| Eco88I | CYCGRG | 1 cut(s) | 110 |
| Eco91I | GGTNACC | 1 cut(s) | 253 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 47, 283 |
| EcoO65I | GGTNACC | 1 cut(s) | 253 |
| EcoRII | CCWGG | 1 cut(s) | 257 |
| EcoT14I | CCWWGG | 1 cut(s) | 48 |
| ErhI | CCWWGG | 1 cut(s) | 48 |
| FaiI | YATR | 2 cut(s) | 68, 149 |
| FauI | CCCGC | 1 cut(s) | 83 |
| Fnu4HI | GCNGC | 4 cut(s) | 79, 216, 290, 293 |
| FokI | GGATG | 1 cut(s) | 83 |
| Fsp4HI | GCNGC | 4 cut(s) | 79, 216, 290, 293 |
| FspBI | CTAG | 1 cut(s) | 137 |
| GluI | GCNGC | 4 cut(s) | 79, 216, 290, 293 |
| HaeIII | GGCC | 1 cut(s) | 11 |
| HgaI | GACGC | 1 cut(s) | 48 |
| Hin1I | GRCGYC | 1 cut(s) | 40 |
| HinfI | GANTC | 2 cut(s) | 62, 209 |
| HphI | GGTGA | 1 cut(s) | 244 |
| Hpy166II | GTNNAC | 1 cut(s) | 324 |
| Hpy188I | TCNGA | 1 cut(s) | 285 |
| Hpy188III | TCNNGA | 1 cut(s) | 112 |
| Hpy8I | GTNNAC | 1 cut(s) | 324 |
| Hpy99I | CGWCG | 1 cut(s) | 42 |
| HpyAV | CCTTC | 1 cut(s) | 154 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 224 |
| HpyF3I | CTNAG | 2 cut(s) | 177, 183 |
| Hsp92I | GRCGYC | 1 cut(s) | 40 |
| KspI | CCGCGG | 1 cut(s) | 79 |
| LpnPI | CCDG | 7 cut(s) | 8, 56, 155, 191, 244, 248, 271 |
| Lsp1109I | GCAGC | 1 cut(s) | 276 |
| LweI | GCATC | 1 cut(s) | 61 |
| MaeI | CTAG | 1 cut(s) | 137 |
| MaeIII | GTNAC | 2 cut(s) | 59, 253 |
| MboII | GAAGA | 1 cut(s) | 278 |
| MlyI | GAGTC | 2 cut(s) | 56, 203 |
| MmeI | TCCRAC | 1 cut(s) | 222 |
| MnlI | CCTC | 7 cut(s) | 108, 119, 223, 238, 244, 279, 289 |
| MspA1I | CMGCKG | 2 cut(s) | 78, 295 |
| MspR9I | CCNGG | 1 cut(s) | 259 |
| MvaI | CCWGG | 1 cut(s) | 259 |
| MvnI | CGCG | 1 cut(s) | 78 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 224 |
| NlaIV | GGNNCC | 1 cut(s) | 107 |
| NmuCI | GTSAC | 1 cut(s) | 59 |
| PaeR7I | CTCGAG | 1 cut(s) | 110 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 117 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 102 |
| PkrI | GCNGC | 4 cut(s) | 80, 217, 291, 294 |
| PleI | GAGTC | 2 cut(s) | 56, 203 |
| PpsI | GAGTC | 2 cut(s) | 56, 203 |
| Psp6I | CCWGG | 1 cut(s) | 257 |
| PspEI | GGTNACC | 1 cut(s) | 253 |
| PspGI | CCWGG | 1 cut(s) | 257 |
| PspN4I | GGNNCC | 1 cut(s) | 107 |
| PspPI | GGNCC | 1 cut(s) | 163 |
| RsaI | GTAC | 1 cut(s) | 325 |
| RsaNI | GTAC | 1 cut(s) | 324 |
| SacII | CCGCGG | 1 cut(s) | 79 |
| SatI | GCNGC | 4 cut(s) | 79, 216, 290, 293 |
| Sau96I | GGNCC | 1 cut(s) | 163 |
| SchI | GAGTC | 2 cut(s) | 56, 203 |
| ScrFI | CCNGG | 1 cut(s) | 259 |
| SetI | ASST | 8 cut(s) | 24, 111, 138, 154, 178, 234, 255, 260 |
| SfaNI | GCATC | 1 cut(s) | 61 |
| Sfr274I | CTCGAG | 1 cut(s) | 110 |
| Sfr303I | CCGCGG | 1 cut(s) | 79 |
| SgrBI | CCGCGG | 1 cut(s) | 79 |
| SinI | GGWCC | 1 cut(s) | 163 |
| SlaI | CTCGAG | 1 cut(s) | 110 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| SsiI | CCGC | 6 cut(s) | 76, 78, 216, 227, 293, 319 |
| SspMI | CTAG | 1 cut(s) | 137 |
| StyD4I | CCNGG | 1 cut(s) | 257 |
| StyI | CCWWGG | 1 cut(s) | 48 |
| TaqI | TCGA | 1 cut(s) | 111 |
| TatI | WGTACW | 1 cut(s) | 323 |
| TauI | GCSGC | 3 cut(s) | 81, 218, 295 |
| TseFI | GTSAC | 1 cut(s) | 59 |
| TseI | GCWGC | 1 cut(s) | 289 |
| Tsp45I | GTSAC | 1 cut(s) | 59 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 102 |
| VpaK11BI | GGWCC | 1 cut(s) | 163 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 47, 283 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 19 |
| XhoI | CTCGAG | 1 cut(s) | 110 |
| XspI | CTAG | 1 cut(s) | 137 |