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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 449, 811, 1103 |
| AbsI | CCTCGAGG | 1 cut(s) | 185 |
| Acc36I | ACCTGC | 3 cut(s) | 449, 811, 1103 |
| AccB1I | GGYRCC | 4 cut(s) | 305, 395, 1193, 1295 |
| AccBSI | CCGCTC | 1 cut(s) | 319 |
| AccII | CGCG | 1 cut(s) | 165 |
| AclWI | GGATC | 2 cut(s) | 227, 1126 |
| AcoI | YGGCCR | 2 cut(s) | 572, 1020 |
| AcsI | RAATTY | 2 cut(s) | 178, 515 |
| AcuI | CTGAAG | 1 cut(s) | 398 |
| AcyI | GRCGYC | 4 cut(s) | 306, 380, 650, 1205 |
| AfaI | GTAC | 3 cut(s) | 197, 327, 570 |
| AflIII | ACRYGT | 1 cut(s) | 141 |
| AgsI | TTSAA | 1 cut(s) | 857 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1209 |
| AjnI | CCWGG | 2 cut(s) | 735, 903 |
| AleI | CACNNNNGTG | 1 cut(s) | 1199 |
| AluBI | AGCT | 9 cut(s) | 364, 603, 640, 682, 886, 895, 989, 1059, 1099 |
| AluI | AGCT | 9 cut(s) | 364, 603, 640, 682, 886, 895, 989, 1059, 1099 |
| Alw21I | GWGCWC | 1 cut(s) | 44 |
| Alw26I | GTCTC | 3 cut(s) | 257, 421, 707 |
| AlwI | GGATC | 2 cut(s) | 227, 1126 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 244, 266, 682 |
| Ama87I | CYCGRG | 4 cut(s) | 43, 185, 542, 1182 |
| AoxI | GGCC | 6 cut(s) | 129, 572, 606, 804, 1020, 1076 |
| ApeKI | GCWGC | 7 cut(s) | 84, 364, 389, 671, 679, 811, 1099 |
| ApoI | RAATTY | 2 cut(s) | 178, 515 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1269, 1301 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 852 |
| AspLEI | GCGC | 2 cut(s) | 308, 753 |
| AspS9I | GGNCC | 4 cut(s) | 160, 314, 580, 1039 |
| AsuC2I | CCSGG | 2 cut(s) | 120, 205 |
| AsuHPI | GGTGA | 7 cut(s) | 70, 262, 286, 585, 841, 1063, 1213 |
| AvaI | CYCGRG | 4 cut(s) | 43, 185, 542, 1182 |
| AvaII | GGWCC | 4 cut(s) | 160, 314, 580, 1039 |
| AxyI | CCTNAGG | 2 cut(s) | 6, 1137 |
| BanI | GGYRCC | 4 cut(s) | 305, 395, 1193, 1295 |
| BanII | GRGCYC | 1 cut(s) | 633 |
| BauI | CACGAG | 2 cut(s) | 320, 1103 |
| BbsI | GAAGAC | 2 cut(s) | 94, 657 |
| Bbv12I | GWGCWC | 1 cut(s) | 44 |
| BbvCI | CCTCAGC | 1 cut(s) | 683 |
| BbvI | GCAGC | 7 cut(s) | 71, 351, 376, 658, 691, 798, 1086 |
| BccI | CCATC | 6 cut(s) | 317, 534, 959, 1004, 1184, 1265 |
| BceAI | ACGGC | 2 cut(s) | 587, 1274 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 181, 215, 1081, 1115 |
| BciT130I | CCWGG | 2 cut(s) | 737, 905 |
| BclI | TGATCA | 1 cut(s) | 1053 |
| BcnI | CCSGG | 2 cut(s) | 120, 205 |
| BcoDI | GTCTC | 3 cut(s) | 257, 421, 707 |
| BfaI | CTAG | 1 cut(s) | 896 |
| BfmI | CTRYAG | 1 cut(s) | 812 |
| BfoI | RGCGCY | 2 cut(s) | 309, 754 |
| BfuAI | ACCTGC | 3 cut(s) | 449, 811, 1103 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 209, 956 |
| BlpI | GCTNAGC | 1 cut(s) | 882 |
| Bme1390I | CCNGG | 4 cut(s) | 120, 205, 737, 905 |
| Bme18I | GGWCC | 4 cut(s) | 160, 314, 580, 1039 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1209 |
| BmeT110I | CYCGRG | 4 cut(s) | 43, 185, 542, 1182 |
| BmgT120I | GGNCC | 4 cut(s) | 160, 314, 580, 1039 |
| BmiI | GGNNCC | 6 cut(s) | 307, 339, 397, 632, 1195, 1297 |
| BmrFI | CCNGG | 4 cut(s) | 120, 205, 737, 905 |
| BmsI | GCATC | 4 cut(s) | 267, 625, 1023, 1025 |
| BpiI | GAAGAC | 2 cut(s) | 94, 657 |
| BpmI | CTGGAG | 3 cut(s) | 569, 758, 1016 |
| Bpu10I | CCTNAGC | 1 cut(s) | 683 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 882 |
| BpuMI | CCSGG | 2 cut(s) | 120, 205 |
| BsaHI | GRCGYC | 4 cut(s) | 306, 380, 650, 1205 |
| BsaI | GGTCTC | 1 cut(s) | 707 |
| BsaJI | CCNNGG | 3 cut(s) | 762, 1197, 1222 |
| Bse118I | RCCGGY | 2 cut(s) | 80, 1264 |
| Bse1I | ACTGG | 4 cut(s) | 113, 132, 256, 921 |
| Bse21I | CCTNAGG | 2 cut(s) | 6, 1137 |
| Bse3DI | GCAATG | 1 cut(s) | 841 |
| BseBI | CCWGG | 2 cut(s) | 737, 905 |
| BseDI | CCNNGG | 3 cut(s) | 762, 1197, 1222 |
| BseGI | GGATG | 4 cut(s) | 790, 805, 1015, 1195 |
| BseMI | GCAATG | 1 cut(s) | 841 |
| BseMII | CTCAG | 5 cut(s) | 251, 258, 674, 873, 1128 |
| BseNI | ACTGG | 4 cut(s) | 113, 132, 256, 921 |
| BseRI | GAGGAG | 3 cut(s) | 23, 503, 704 |
| BseX3I | CGGCCG | 1 cut(s) | 572 |
| BseXI | GCAGC | 7 cut(s) | 71, 351, 376, 658, 691, 798, 1086 |
| BseYI | CCCAGC | 2 cut(s) | 87, 1059 |
| BsgI | GTGCAG | 1 cut(s) | 657 |
| Bsh1236I | CGCG | 1 cut(s) | 165 |
| Bsh1285I | CGRYCG | 1 cut(s) | 575 |
| BshFI | GGCC | 6 cut(s) | 131, 574, 608, 806, 1022, 1078 |
| BshNI | GGYRCC | 4 cut(s) | 305, 395, 1193, 1295 |
| BsiEI | CGRYCG | 1 cut(s) | 575 |
| BsiHKAI | GWGCWC | 1 cut(s) | 44 |
| BsiHKCI | CYCGRG | 4 cut(s) | 43, 185, 542, 1182 |
| BsiSI | CCGG | 4 cut(s) | 81, 120, 204, 1265 |
| BslFI | GGGAC | 3 cut(s) | 577, 736, 1076 |
| BsmAI | GTCTC | 3 cut(s) | 257, 421, 707 |
| BsmFI | GGGAC | 3 cut(s) | 577, 736, 1076 |
| BsmI | GAATGC | 1 cut(s) | 1147 |
| BsnI | GGCC | 6 cut(s) | 131, 574, 608, 806, 1022, 1078 |
| Bso31I | GGTCTC | 1 cut(s) | 707 |
| BsoBI | CYCGRG | 4 cut(s) | 43, 185, 542, 1182 |
| Bsp1286I | GDGCHC | 2 cut(s) | 44, 633 |
| Bsp1407I | TGTACA | 1 cut(s) | 195 |
| Bsp143I | GATC | 5 cut(s) | 232, 502, 1053, 1118, 1129 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 882 |
| Bsp19I | CCATGG | 2 cut(s) | 1197, 1222 |
| BspANI | GGCC | 6 cut(s) | 131, 574, 608, 806, 1022, 1078 |
| BspCNI | CTCAG | 5 cut(s) | 250, 259, 675, 874, 1129 |
| BspFNI | CGCG | 1 cut(s) | 165 |
| BspLI | GGNNCC | 6 cut(s) | 307, 339, 397, 632, 1195, 1297 |
| BspMAI | CTGCAG | 1 cut(s) | 816 |
| BspMI | ACCTGC | 3 cut(s) | 449, 811, 1103 |
| BspPI | GGATC | 2 cut(s) | 227, 1126 |
| BspT107I | GGYRCC | 4 cut(s) | 305, 395, 1193, 1295 |
| BspTNI | GGTCTC | 1 cut(s) | 707 |
| BsrBI | CCGCTC | 1 cut(s) | 319 |
| BsrDI | GCAATG | 1 cut(s) | 841 |
| BsrFI | RCCGGY | 2 cut(s) | 80, 1264 |
| BsrGI | TGTACA | 1 cut(s) | 195 |
| BsrI | ACTGG | 4 cut(s) | 113, 132, 256, 921 |
| BssAI | RCCGGY | 2 cut(s) | 80, 1264 |
| BssECI | CCNNGG | 3 cut(s) | 762, 1197, 1222 |
| BssMI | GATC | 5 cut(s) | 232, 502, 1053, 1118, 1129 |
| BssNI | GRCGYC | 4 cut(s) | 306, 380, 650, 1205 |
| BssSI | CACGAG | 2 cut(s) | 320, 1103 |
| BssT1I | CCWWGG | 3 cut(s) | 762, 1197, 1222 |
| Bst2BI | CACGAG | 2 cut(s) | 320, 1103 |
| Bst2UI | CCWGG | 2 cut(s) | 737, 905 |
| Bst4CI | ACNGT | 5 cut(s) | 568, 580, 597, 759, 1126 |
| BstACI | GRCGYC | 4 cut(s) | 306, 380, 650, 1205 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 991 |
| BstAUI | TGTACA | 1 cut(s) | 195 |
| BstC8I | GCNNGC | 6 cut(s) | 74, 987, 1080, 1097, 1110, 1247 |
| BstDEI | CTNAG | 6 cut(s) | 6, 237, 267, 683, 882, 1137 |
| BstDSI | CCRYGG | 2 cut(s) | 1197, 1222 |
| BstF5I | GGATG | 4 cut(s) | 790, 805, 1015, 1195 |
| BstFNI | CGCG | 1 cut(s) | 165 |
| BstH2I | RGCGCY | 2 cut(s) | 309, 754 |
| BstHHI | GCGC | 2 cut(s) | 308, 753 |
| BstKTI | GATC | 5 cut(s) | 235, 505, 1056, 1121, 1132 |
| BstMAI | GTCTC | 3 cut(s) | 257, 421, 707 |
| BstMBI | GATC | 5 cut(s) | 232, 502, 1053, 1118, 1129 |
| BstMCI | CGRYCG | 1 cut(s) | 575 |
| BstNI | CCWGG | 2 cut(s) | 737, 905 |
| BstNSI | RCATGY | 3 cut(s) | 145, 196, 1175 |
| BstSCI | CCNGG | 4 cut(s) | 118, 203, 735, 903 |
| BstSFI | CTRYAG | 1 cut(s) | 812 |
| BstUI | CGCG | 1 cut(s) | 165 |
| BstV1I | GCAGC | 7 cut(s) | 71, 351, 376, 658, 691, 798, 1086 |
| BstV2I | GAAGAC | 2 cut(s) | 94, 657 |
| BstX2I | RGATCY | 1 cut(s) | 1118 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 736 |
| BstYI | RGATCY | 1 cut(s) | 1118 |
| BstZI | CGGCCG | 1 cut(s) | 572 |
| Bsu36I | CCTNAGG | 2 cut(s) | 6, 1137 |
| BsuRI | GGCC | 6 cut(s) | 131, 574, 608, 806, 1022, 1078 |
| BtgI | CCRYGG | 2 cut(s) | 1197, 1222 |
| BtgZI | GCGATG | 1 cut(s) | 184 |
| BtsCI | GGATG | 4 cut(s) | 790, 805, 1015, 1195 |
| BtsI | GCAGTG | 2 cut(s) | 20, 219 |
| BtsIMutI | CAGTG | 2 cut(s) | 20, 219 |
| BveI | ACCTGC | 3 cut(s) | 449, 811, 1103 |
| Cac8I | GCNNGC | 6 cut(s) | 74, 987, 1080, 1097, 1110, 1247 |
| CaiI | CAGNNNCTG | 3 cut(s) | 244, 266, 682 |
| CfoI | GCGC | 2 cut(s) | 308, 753 |
| Cfr10I | RCCGGY | 2 cut(s) | 80, 1264 |
| Cfr13I | GGNCC | 4 cut(s) | 160, 314, 580, 1039 |
| CpoI | CGGWCCG | 2 cut(s) | 160, 314 |
| CseI | GACGC | 3 cut(s) | 388, 639, 1213 |
| Csp6I | GTAC | 3 cut(s) | 196, 326, 569 |
| CspI | CGGWCCG | 2 cut(s) | 160, 314 |
| CviAII | CATG | 9 cut(s) | 142, 193, 283, 635, 935, 1172, 1198, 1223, 1252 |
| CviQI | GTAC | 3 cut(s) | 196, 326, 569 |
| DdeI | CTNAG | 6 cut(s) | 6, 237, 267, 683, 882, 1137 |
| DinI | GGCGCC | 1 cut(s) | 307 |
| DpnI | GATC | 5 cut(s) | 234, 504, 1055, 1120, 1131 |
| DpnII | GATC | 5 cut(s) | 232, 502, 1053, 1118, 1129 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1209 |
| EaeI | YGGCCR | 2 cut(s) | 572, 1020 |
| EagI | CGGCCG | 1 cut(s) | 572 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1209 |
| EciI | GGCGGA | 2 cut(s) | 95, 1202 |
| EclXI | CGGCCG | 1 cut(s) | 572 |
| Eco130I | CCWWGG | 3 cut(s) | 762, 1197, 1222 |
| Eco24I | GRGCYC | 1 cut(s) | 633 |
| Eco31I | GGTCTC | 1 cut(s) | 707 |
| Eco47I | GGWCC | 4 cut(s) | 160, 314, 580, 1039 |
| Eco52I | CGGCCG | 1 cut(s) | 572 |
| Eco57I | CTGAAG | 1 cut(s) | 398 |
| Eco81I | CCTNAGG | 2 cut(s) | 6, 1137 |
| Eco88I | CYCGRG | 4 cut(s) | 43, 185, 542, 1182 |
| EcoRI | GAATTC | 1 cut(s) | 515 |
| EcoRII | CCWGG | 2 cut(s) | 735, 903 |
| EcoT14I | CCWWGG | 3 cut(s) | 762, 1197, 1222 |
| EcoT38I | GRGCYC | 1 cut(s) | 633 |
| EgeI | GGCGCC | 1 cut(s) | 307 |
| EheI | GGCGCC | 1 cut(s) | 307 |
| ErhI | CCWWGG | 3 cut(s) | 762, 1197, 1222 |
| FaeI | CATG | 9 cut(s) | 145, 196, 286, 638, 938, 1175, 1201, 1226, 1255 |
| FaqI | GGGAC | 3 cut(s) | 577, 736, 1076 |
| FatI | CATG | 9 cut(s) | 141, 192, 282, 634, 934, 1171, 1197, 1222, 1251 |
| FbaI | TGATCA | 1 cut(s) | 1053 |
| FokI | GGATG | 4 cut(s) | 797, 812, 1022, 1202 |
| FriOI | GRGCYC | 1 cut(s) | 633 |
| FspBI | CTAG | 1 cut(s) | 896 |
| GlaI | GCGC | 2 cut(s) | 307, 752 |
| GsaI | CCCAGC | 2 cut(s) | 91, 1063 |
| GsuI | CTGGAG | 3 cut(s) | 569, 758, 1016 |
| HaeII | RGCGCY | 2 cut(s) | 309, 754 |
| HaeIII | GGCC | 6 cut(s) | 131, 574, 608, 806, 1022, 1078 |
| HapII | CCGG | 4 cut(s) | 81, 120, 204, 1265 |
| HgaI | GACGC | 3 cut(s) | 388, 639, 1213 |
| HhaI | GCGC | 2 cut(s) | 308, 753 |
| Hin1I | GRCGYC | 4 cut(s) | 306, 380, 650, 1205 |
| Hin1II | CATG | 9 cut(s) | 145, 196, 286, 638, 938, 1175, 1201, 1226, 1255 |
| Hin6I | GCGC | 2 cut(s) | 306, 751 |
| HinP1I | GCGC | 2 cut(s) | 306, 751 |
| HindIII | AAGCTT | 1 cut(s) | 987 |
| HinfI | GANTC | 6 cut(s) | 49, 241, 470, 863, 931, 1210 |
| HpaII | CCGG | 4 cut(s) | 81, 120, 204, 1265 |
| HphI | GGTGA | 7 cut(s) | 70, 262, 286, 585, 841, 1063, 1213 |
| Hpy188I | TCNGA | 7 cut(s) | 240, 262, 417, 498, 707, 914, 1231 |
| Hpy188III | TCNNGA | 4 cut(s) | 62, 467, 506, 1030 |
| Hpy99I | CGWCG | 4 cut(s) | 382, 446, 580, 629 |
| HpyAV | CCTTC | 6 cut(s) | 68, 77, 619, 826, 863, 1039 |
| HpyCH4III | ACNGT | 5 cut(s) | 568, 580, 597, 759, 1126 |
| HpyCH4V | TGCA | 7 cut(s) | 175, 367, 674, 814, 1016, 1147, 1255 |
| HpyF3I | CTNAG | 6 cut(s) | 6, 237, 267, 683, 882, 1137 |
| Hsp92I | GRCGYC | 4 cut(s) | 306, 380, 650, 1205 |
| Hsp92II | CATG | 9 cut(s) | 145, 196, 286, 638, 938, 1175, 1201, 1226, 1255 |
| HspAI | GCGC | 2 cut(s) | 306, 751 |
| KasI | GGCGCC | 1 cut(s) | 305 |
| Ksp22I | TGATCA | 1 cut(s) | 1053 |
| Kzo9I | GATC | 5 cut(s) | 232, 502, 1053, 1118, 1129 |
| LmnI | GCTCC | 5 cut(s) | 10, 361, 636, 793, 817 |
| Lsp1109I | GCAGC | 7 cut(s) | 71, 351, 376, 658, 691, 798, 1086 |
| LweI | GCATC | 4 cut(s) | 267, 625, 1023, 1025 |
| MaeI | CTAG | 1 cut(s) | 896 |
| MaeIII | GTNAC | 4 cut(s) | 53, 343, 591, 1201 |
| MalI | GATC | 5 cut(s) | 234, 504, 1055, 1120, 1131 |
| MbiI | CCGCTC | 1 cut(s) | 319 |
| MboI | GATC | 5 cut(s) | 232, 502, 1053, 1118, 1129 |
| MboII | GAAGA | 3 cut(s) | 94, 404, 657 |
| MflI | RGATCY | 1 cut(s) | 1118 |
| MhlI | GDGCHC | 2 cut(s) | 44, 633 |
| MluCI | AATT | 4 cut(s) | 170, 178, 368, 515 |
| Mly113I | GGCGCC | 1 cut(s) | 306 |
| MlyI | GAGTC | 5 cut(s) | 235, 464, 872, 925, 1219 |
| MmeI | TCCRAC | 3 cut(s) | 339, 537, 937 |
| MroXI | GAANNNNTTC | 1 cut(s) | 852 |
| MseI | TTAA | 1 cut(s) | 33 |
| MslI | CAYNNNNRTG | 3 cut(s) | 939, 1152, 1199 |
| MspA1I | CMGCKG | 6 cut(s) | 671, 682, 869, 881, 1059, 1099 |
| MspI | CCGG | 4 cut(s) | 81, 120, 204, 1265 |
| MspR9I | CCNGG | 4 cut(s) | 120, 205, 737, 905 |
| Mva1269I | GAATGC | 1 cut(s) | 1147 |
| MvaI | CCWGG | 2 cut(s) | 737, 905 |
| MvnI | CGCG | 1 cut(s) | 165 |
| NarI | GGCGCC | 1 cut(s) | 306 |
| NciI | CCSGG | 2 cut(s) | 120, 205 |
| NcoI | CCATGG | 2 cut(s) | 1197, 1222 |
| NdeII | GATC | 5 cut(s) | 232, 502, 1053, 1118, 1129 |
| NlaIII | CATG | 9 cut(s) | 145, 196, 286, 638, 938, 1175, 1201, 1226, 1255 |
| NlaIV | GGNNCC | 6 cut(s) | 307, 339, 397, 632, 1195, 1297 |
| NmeAIII | GCCGAG | 1 cut(s) | 1233 |
| NmuCI | GTSAC | 2 cut(s) | 591, 1201 |
| NspI | RCATGY | 3 cut(s) | 145, 196, 1175 |
| OliI | CACNNNNGTG | 1 cut(s) | 1199 |
| PaeR7I | CTCGAG | 2 cut(s) | 185, 542 |
| PaqCI | CACCTGC | 3 cut(s) | 449, 811, 1103 |
| PciI | ACATGT | 1 cut(s) | 141 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 318, 540 |
| PctI | GAATGC | 1 cut(s) | 1147 |
| PdmI | GAANNNNTTC | 1 cut(s) | 852 |
| PfeI | GAWTC | 1 cut(s) | 49 |
| PleI | GAGTC | 5 cut(s) | 235, 464, 871, 925, 1218 |
| PluTI | GGCGCC | 1 cut(s) | 309 |
| PpsI | GAGTC | 5 cut(s) | 235, 464, 871, 925, 1218 |
| PscI | ACATGT | 1 cut(s) | 141 |
| Psp6I | CCWGG | 2 cut(s) | 735, 903 |
| PspFI | CCCAGC | 2 cut(s) | 87, 1059 |
| PspGI | CCWGG | 2 cut(s) | 735, 903 |
| PspN4I | GGNNCC | 6 cut(s) | 307, 339, 397, 632, 1195, 1297 |
| PspPI | GGNCC | 4 cut(s) | 160, 314, 580, 1039 |
| PspXI | VCTCGAGB | 2 cut(s) | 185, 542 |
| PstI | CTGCAG | 1 cut(s) | 816 |
| PstNI | CAGNNNCTG | 3 cut(s) | 244, 266, 682 |
| PsuI | RGATCY | 1 cut(s) | 1118 |
| PvuII | CAGCTG | 3 cut(s) | 682, 1059, 1099 |
| RsaI | GTAC | 3 cut(s) | 197, 327, 570 |
| RsaNI | GTAC | 3 cut(s) | 196, 326, 569 |
| RseI | CAYNNNNRTG | 3 cut(s) | 939, 1152, 1199 |
| Rsr2I | CGGWCCG | 2 cut(s) | 160, 314 |
| RsrII | CGGWCCG | 2 cut(s) | 160, 314 |
| SaqAI | TTAA | 1 cut(s) | 33 |
| Sau3AI | GATC | 5 cut(s) | 232, 502, 1053, 1118, 1129 |
| Sau96I | GGNCC | 4 cut(s) | 160, 314, 580, 1039 |
| SchI | GAGTC | 5 cut(s) | 235, 464, 872, 925, 1219 |
| ScrFI | CCNGG | 4 cut(s) | 120, 205, 737, 905 |
| SduI | GDGCHC | 2 cut(s) | 44, 633 |
| SfaNI | GCATC | 4 cut(s) | 267, 625, 1023, 1025 |
| SfcI | CTRYAG | 1 cut(s) | 812 |
| SfoI | GGCGCC | 1 cut(s) | 307 |
| Sfr274I | CTCGAG | 2 cut(s) | 185, 542 |
| SinI | GGWCC | 4 cut(s) | 160, 314, 580, 1039 |
| SlaI | CTCGAG | 2 cut(s) | 185, 542 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 939, 1152, 1199 |
| SmlI | CTYRAG | 2 cut(s) | 185, 542 |
| SmoI | CTYRAG | 2 cut(s) | 185, 542 |
| Sse9I | AATT | 4 cut(s) | 170, 178, 368, 515 |
| SspDI | GGCGCC | 1 cut(s) | 305 |
| SspMI | CTAG | 1 cut(s) | 896 |
| StyD4I | CCNGG | 4 cut(s) | 118, 203, 735, 903 |
| StyI | CCWWGG | 3 cut(s) | 762, 1197, 1222 |
| TaaI | ACNGT | 5 cut(s) | 568, 580, 597, 759, 1126 |
| TaqI | TCGA | 7 cut(s) | 186, 377, 507, 543, 1029, 1091, 1128 |
| TaqII | GACCGA | 1 cut(s) | 302 |
| TasI | AATT | 4 cut(s) | 170, 178, 368, 515 |
| TatI | WGTACW | 1 cut(s) | 195 |
| TauI | GCSGC | 4 cut(s) | 21, 289, 1004, 1245 |
| TfiI | GAWTC | 1 cut(s) | 49 |
| Tru1I | TTAA | 1 cut(s) | 33 |
| Tru9I | TTAA | 1 cut(s) | 33 |
| TscAI | CASTG | 2 cut(s) | 20, 219 |
| TseFI | GTSAC | 2 cut(s) | 591, 1201 |
| TseI | GCWGC | 7 cut(s) | 84, 364, 389, 671, 679, 811, 1099 |
| Tsp45I | GTSAC | 2 cut(s) | 591, 1201 |
| TspGWI | ACGGA | 2 cut(s) | 173, 613 |
| TspRI | CASTG | 2 cut(s) | 20, 219 |
| VpaK11BI | GGWCC | 4 cut(s) | 160, 314, 580, 1039 |
| XapI | RAATTY | 2 cut(s) | 178, 515 |
| XceI | RCATGY | 3 cut(s) | 145, 196, 1175 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 299, 355 |
| XhoI | CTCGAG | 2 cut(s) | 185, 542 |
| XmnI | GAANNNNTTC | 1 cut(s) | 852 |
| XspI | CTAG | 1 cut(s) | 896 |