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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 1121, 1244 |
| AccB1I | GGYRCC | 4 cut(s) | 105, 151, 1121, 1244 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1038, 1099 |
| AccBSI | CCGCTC | 7 cut(s) | 138, 287, 550, 763, 841, 1238, 1271 |
| AccI | GTMKAC | 1 cut(s) | 405 |
| AccII | CGCG | 2 cut(s) | 310, 312 |
| AclWI | GGATC | 4 cut(s) | 331, 344, 897, 1255 |
| AcsI | RAATTY | 1 cut(s) | 269 |
| AcuI | CTGAAG | 3 cut(s) | 194, 905, 1037 |
| AcyI | GRCGYC | 1 cut(s) | 1049 |
| AfaI | GTAC | 4 cut(s) | 221, 959, 1123, 1246 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 213, 415, 487, 886, 1038, 1094, 1099, 1322 |
| AgsI | TTSAA | 3 cut(s) | 60, 1071, 1131 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1293 |
| AjiI | CACGTC | 2 cut(s) | 436, 835 |
| AjnI | CCWGG | 1 cut(s) | 857 |
| Alw26I | GTCTC | 6 cut(s) | 434, 719, 859, 1033, 1207, 1322 |
| AlwI | GGATC | 4 cut(s) | 331, 344, 897, 1255 |
| Ama87I | CYCGRG | 2 cut(s) | 678, 1233 |
| AoxI | GGCC | 5 cut(s) | 289, 477, 506, 618, 987 |
| ApeKI | GCWGC | 7 cut(s) | 662, 691, 804, 899, 926, 1012, 1223 |
| ApoI | RAATTY | 1 cut(s) | 269 |
| Asp718I | GGTACC | 2 cut(s) | 1121, 1244 |
| AspLEI | GCGC | 3 cut(s) | 297, 312, 585 |
| AspS9I | GGNCC | 4 cut(s) | 189, 289, 478, 506 |
| AsuC2I | CCSGG | 2 cut(s) | 679, 680 |
| AsuHPI | GGTGA | 1 cut(s) | 597 |
| AsuII | TTCGAA | 1 cut(s) | 668 |
| AvaI | CYCGRG | 2 cut(s) | 678, 1233 |
| AvaII | GGWCC | 1 cut(s) | 189 |
| AxyI | CCTNAGG | 1 cut(s) | 519 |
| BaeGI | GKGCMC | 1 cut(s) | 630 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1236, 1269 |
| BamHI | GGATCC | 1 cut(s) | 336 |
| BanI | GGYRCC | 4 cut(s) | 105, 151, 1121, 1244 |
| BauI | CACGAG | 1 cut(s) | 1272 |
| BbsI | GAAGAC | 2 cut(s) | 740, 1059 |
| BbvCI | CCTCAGC | 2 cut(s) | 1116, 1170 |
| BbvI | GCAGC | 7 cut(s) | 674, 703, 816, 886, 938, 999, 1235 |
| BccI | CCATC | 4 cut(s) | 10, 203, 207, 1235 |
| BceAI | ACGGC | 1 cut(s) | 806 |
| BciT130I | CCWGG | 1 cut(s) | 859 |
| BclI | TGATCA | 1 cut(s) | 598 |
| BcnI | CCSGG | 2 cut(s) | 679, 680 |
| BcoDI | GTCTC | 6 cut(s) | 434, 719, 859, 1033, 1207, 1322 |
| BfaI | CTAG | 3 cut(s) | 368, 863, 1290 |
| BfmI | CTRYAG | 2 cut(s) | 298, 924 |
| BglII | AGATCT | 1 cut(s) | 370 |
| BlpI | GCTNAGC | 1 cut(s) | 695 |
| Bme1390I | CCNGG | 3 cut(s) | 679, 680, 859 |
| Bme18I | GGWCC | 1 cut(s) | 189 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1293 |
| BmeT110I | CYCGRG | 2 cut(s) | 678, 1233 |
| BmgBI | CACGTC | 2 cut(s) | 436, 835 |
| BmgT120I | GGNCC | 4 cut(s) | 189, 289, 478, 506 |
| BmrFI | CCNGG | 3 cut(s) | 679, 680, 859 |
| BmrI | ACTGGG | 2 cut(s) | 404, 1048 |
| BmsI | GCATC | 4 cut(s) | 415, 745, 778, 787 |
| BmuI | ACTGGG | 2 cut(s) | 404, 1048 |
| BpiI | GAAGAC | 2 cut(s) | 740, 1059 |
| BpmI | CTGGAG | 3 cut(s) | 590, 701, 841 |
| Bpu10I | CCTNAGC | 3 cut(s) | 134, 1116, 1170 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 695 |
| Bpu14I | TTCGAA | 1 cut(s) | 668 |
| BpuMI | CCSGG | 2 cut(s) | 679, 680 |
| BsaHI | GRCGYC | 1 cut(s) | 1049 |
| BsaI | GGTCTC | 3 cut(s) | 719, 1033, 1207 |
| BsaJI | CCNNGG | 6 cut(s) | 63, 109, 677, 678, 774, 1093 |
| BsaWI | WCCGGW | 2 cut(s) | 44, 1156 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 839, 869, 1168, 1198 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 213, 415, 487, 886, 1038, 1094, 1099, 1322 |
| Bse118I | RCCGGY | 1 cut(s) | 386 |
| Bse1I | ACTGG | 4 cut(s) | 325, 410, 990, 1043 |
| Bse21I | CCTNAGG | 1 cut(s) | 519 |
| Bse3DI | GCAATG | 1 cut(s) | 909 |
| BseBI | CCWGG | 1 cut(s) | 859 |
| BseDI | CCNNGG | 6 cut(s) | 63, 109, 677, 678, 774, 1093 |
| BseGI | GGATG | 4 cut(s) | 218, 436, 760, 1246 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 213, 415, 487, 886, 1038, 1094, 1099, 1322 |
| BseMI | GCAATG | 1 cut(s) | 909 |
| BseMII | CTCAG | 8 cut(s) | 125, 510, 709, 966, 1107, 1184, 1188, 1205 |
| BseNI | ACTGG | 4 cut(s) | 325, 410, 990, 1043 |
| BseRI | GAGGAG | 2 cut(s) | 527, 716 |
| BseSI | GKGCMC | 1 cut(s) | 630 |
| BseXI | GCAGC | 7 cut(s) | 674, 703, 816, 886, 938, 999, 1235 |
| BseYI | CCCAGC | 2 cut(s) | 390, 553 |
| Bsh1236I | CGCG | 2 cut(s) | 310, 312 |
| Bsh1285I | CGRYCG | 1 cut(s) | 142 |
| BshFI | GGCC | 5 cut(s) | 291, 479, 508, 620, 989 |
| BshNI | GGYRCC | 4 cut(s) | 105, 151, 1121, 1244 |
| BsiEI | CGRYCG | 1 cut(s) | 142 |
| BsiHKCI | CYCGRG | 2 cut(s) | 678, 1233 |
| BsiSI | CCGG | 6 cut(s) | 45, 387, 509, 679, 830, 1157 |
| BslFI | GGGAC | 3 cut(s) | 202, 922, 1036 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 213, 415, 487, 886, 1038, 1094, 1099, 1322 |
| BsmAI | GTCTC | 6 cut(s) | 434, 719, 859, 1033, 1207, 1322 |
| BsmFI | GGGAC | 3 cut(s) | 202, 922, 1036 |
| BsmI | GAATGC | 1 cut(s) | 241 |
| BsnI | GGCC | 5 cut(s) | 291, 479, 508, 620, 989 |
| Bso31I | GGTCTC | 3 cut(s) | 719, 1033, 1207 |
| BsoBI | CYCGRG | 2 cut(s) | 678, 1233 |
| Bsp119I | TTCGAA | 1 cut(s) | 668 |
| Bsp1286I | GDGCHC | 1 cut(s) | 630 |
| Bsp143I | GATC | 7 cut(s) | 336, 370, 598, 705, 889, 1260, 1282 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 695 |
| BspANI | GGCC | 5 cut(s) | 291, 479, 508, 620, 989 |
| BspCNI | CTCAG | 8 cut(s) | 126, 511, 708, 967, 1108, 1183, 1189, 1204 |
| BspFNI | CGCG | 2 cut(s) | 310, 312 |
| BspMAI | CTGCAG | 1 cut(s) | 928 |
| BspPI | GGATC | 4 cut(s) | 331, 344, 897, 1255 |
| BspT104I | TTCGAA | 1 cut(s) | 668 |
| BspT107I | GGYRCC | 4 cut(s) | 105, 151, 1121, 1244 |
| BspTNI | GGTCTC | 3 cut(s) | 719, 1033, 1207 |
| BsrBI | CCGCTC | 7 cut(s) | 138, 287, 550, 763, 841, 1238, 1271 |
| BsrDI | GCAATG | 1 cut(s) | 909 |
| BsrFI | RCCGGY | 1 cut(s) | 386 |
| BsrI | ACTGG | 4 cut(s) | 325, 410, 990, 1043 |
| BssAI | RCCGGY | 1 cut(s) | 386 |
| BssECI | CCNNGG | 6 cut(s) | 63, 109, 677, 678, 774, 1093 |
| BssMI | GATC | 7 cut(s) | 336, 370, 598, 705, 889, 1260, 1282 |
| BssNI | GRCGYC | 1 cut(s) | 1049 |
| BssSI | CACGAG | 1 cut(s) | 1272 |
| BssT1I | CCWWGG | 3 cut(s) | 109, 774, 1093 |
| Bst2BI | CACGAG | 1 cut(s) | 1272 |
| Bst2UI | CCWGG | 1 cut(s) | 859 |
| Bst4CI | ACNGT | 4 cut(s) | 64, 496, 502, 746 |
| Bst6I | CTCTTC | 2 cut(s) | 312, 539 |
| BstACI | GRCGYC | 1 cut(s) | 1049 |
| BstBI | TTCGAA | 1 cut(s) | 668 |
| BstC8I | GCNNGC | 8 cut(s) | 289, 293, 458, 477, 548, 802, 1080, 1213 |
| BstDEI | CTNAG | 9 cut(s) | 134, 519, 695, 738, 975, 1116, 1170, 1191, 1197 |
| BstDSI | CCRYGG | 1 cut(s) | 63 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 884 |
| BstF5I | GGATG | 4 cut(s) | 218, 436, 760, 1246 |
| BstFNI | CGCG | 2 cut(s) | 310, 312 |
| BstHHI | GCGC | 3 cut(s) | 297, 312, 585 |
| BstKTI | GATC | 7 cut(s) | 339, 373, 601, 708, 892, 1263, 1285 |
| BstMAI | GTCTC | 6 cut(s) | 434, 719, 859, 1033, 1207, 1322 |
| BstMBI | GATC | 7 cut(s) | 336, 370, 598, 705, 889, 1260, 1282 |
| BstMCI | CGRYCG | 1 cut(s) | 142 |
| BstNI | CCWGG | 1 cut(s) | 859 |
| BstSCI | CCNGG | 3 cut(s) | 677, 678, 857 |
| BstSFI | CTRYAG | 2 cut(s) | 298, 924 |
| BstSLI | GKGCMC | 1 cut(s) | 630 |
| BstUI | CGCG | 2 cut(s) | 310, 312 |
| BstV1I | GCAGC | 7 cut(s) | 674, 703, 816, 886, 938, 999, 1235 |
| BstV2I | GAAGAC | 2 cut(s) | 740, 1059 |
| BstX2I | RGATCY | 2 cut(s) | 336, 370 |
| BstYI | RGATCY | 2 cut(s) | 336, 370 |
| Bsu36I | CCTNAGG | 1 cut(s) | 519 |
| BsuRI | GGCC | 5 cut(s) | 291, 479, 508, 620, 989 |
| BtgI | CCRYGG | 1 cut(s) | 63 |
| BtrI | CACGTC | 2 cut(s) | 436, 835 |
| BtsCI | GGATG | 4 cut(s) | 218, 436, 760, 1246 |
| BtsIMutI | CAGTG | 1 cut(s) | 997 |
| Cac8I | GCNNGC | 8 cut(s) | 289, 293, 458, 477, 548, 802, 1080, 1213 |
| CfoI | GCGC | 3 cut(s) | 297, 312, 585 |
| Cfr10I | RCCGGY | 1 cut(s) | 386 |
| Cfr13I | GGNCC | 4 cut(s) | 189, 289, 478, 506 |
| Cfr9I | CCCGGG | 1 cut(s) | 678 |
| CseI | GACGC | 4 cut(s) | 316, 1038, 1096, 1142 |
| Csp6I | GTAC | 4 cut(s) | 220, 958, 1122, 1245 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 577, 612 |
| CviAII | CATG | 2 cut(s) | 647, 851 |
| CviQI | GTAC | 4 cut(s) | 220, 958, 1122, 1245 |
| DdeI | CTNAG | 9 cut(s) | 134, 519, 695, 738, 975, 1116, 1170, 1191, 1197 |
| DpnI | GATC | 7 cut(s) | 338, 372, 600, 707, 891, 1262, 1284 |
| DpnII | GATC | 7 cut(s) | 336, 370, 598, 705, 889, 1260, 1282 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1293 |
| Eam1104I | CTCTTC | 2 cut(s) | 312, 539 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1293 |
| EarI | CTCTTC | 2 cut(s) | 312, 539 |
| EciI | GGCGGA | 2 cut(s) | 329, 767 |
| Eco130I | CCWWGG | 3 cut(s) | 109, 774, 1093 |
| Eco31I | GGTCTC | 3 cut(s) | 719, 1033, 1207 |
| Eco47I | GGWCC | 1 cut(s) | 189 |
| Eco57I | CTGAAG | 3 cut(s) | 194, 905, 1037 |
| Eco81I | CCTNAGG | 1 cut(s) | 519 |
| Eco88I | CYCGRG | 2 cut(s) | 678, 1233 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 884 |
| EcoO109I | RGGNCCY | 2 cut(s) | 189, 478 |
| EcoRI | GAATTC | 1 cut(s) | 269 |
| EcoRII | CCWGG | 1 cut(s) | 857 |
| EcoT14I | CCWWGG | 3 cut(s) | 109, 774, 1093 |
| ErhI | CCWWGG | 3 cut(s) | 109, 774, 1093 |
| FaeI | CATG | 2 cut(s) | 650, 854 |
| FaiI | YATR | 8 cut(s) | 34, 97, 99, 300, 612, 648, 852, 875 |
| FaqI | GGGAC | 3 cut(s) | 202, 922, 1036 |
| FatI | CATG | 2 cut(s) | 646, 850 |
| FauI | CCCGC | 8 cut(s) | 177, 220, 232, 280, 809, 1096, 1130, 1188 |
| FbaI | TGATCA | 1 cut(s) | 598 |
| FblI | GTMKAC | 1 cut(s) | 405 |
| FokI | GGATG | 4 cut(s) | 225, 443, 767, 1253 |
| FspBI | CTAG | 3 cut(s) | 368, 863, 1290 |
| GlaI | GCGC | 3 cut(s) | 296, 311, 584 |
| GsaI | CCCAGC | 2 cut(s) | 394, 557 |
| GsuI | CTGGAG | 3 cut(s) | 590, 701, 841 |
| HaeIII | GGCC | 5 cut(s) | 291, 479, 508, 620, 989 |
| HapII | CCGG | 6 cut(s) | 45, 387, 509, 679, 830, 1157 |
| HgaI | GACGC | 4 cut(s) | 316, 1038, 1096, 1142 |
| HhaI | GCGC | 3 cut(s) | 297, 312, 585 |
| Hin1I | GRCGYC | 1 cut(s) | 1049 |
| Hin1II | CATG | 2 cut(s) | 650, 854 |
| Hin6I | GCGC | 3 cut(s) | 295, 310, 583 |
| HinP1I | GCGC | 3 cut(s) | 295, 310, 583 |
| HincII | GTYRAC | 2 cut(s) | 406, 972 |
| HindII | GTYRAC | 2 cut(s) | 406, 972 |
| HinfI | GANTC | 3 cut(s) | 169, 576, 910 |
| HpaII | CCGG | 6 cut(s) | 45, 387, 509, 679, 830, 1157 |
| HphI | GGTGA | 1 cut(s) | 597 |
| Hpy166II | GTNNAC | 4 cut(s) | 130, 406, 972, 1162 |
| Hpy188I | TCNGA | 6 cut(s) | 174, 268, 284, 1198, 1282, 1287 |
| Hpy188III | TCNNGA | 3 cut(s) | 146, 166, 718 |
| Hpy8I | GTNNAC | 4 cut(s) | 130, 406, 972, 1162 |
| Hpy99I | CGWCG | 2 cut(s) | 955, 1112 |
| HpyAV | CCTTC | 5 cut(s) | 169, 202, 460, 631, 880 |
| HpyCH4III | ACNGT | 4 cut(s) | 64, 496, 502, 746 |
| HpyCH4IV | ACGT | 2 cut(s) | 435, 834 |
| HpyCH4V | TGCA | 2 cut(s) | 902, 926 |
| HpyF3I | CTNAG | 9 cut(s) | 134, 519, 695, 738, 975, 1116, 1170, 1191, 1197 |
| HpySE526I | ACGT | 2 cut(s) | 435, 834 |
| Hsp92I | GRCGYC | 1 cut(s) | 1049 |
| Hsp92II | CATG | 2 cut(s) | 650, 854 |
| HspAI | GCGC | 3 cut(s) | 295, 310, 583 |
| KpnI | GGTACC | 2 cut(s) | 1125, 1248 |
| Ksp22I | TGATCA | 1 cut(s) | 598 |
| Kzo9I | GATC | 7 cut(s) | 336, 370, 598, 705, 889, 1260, 1282 |
| Lsp1109I | GCAGC | 7 cut(s) | 674, 703, 816, 886, 938, 999, 1235 |
| LweI | GCATC | 4 cut(s) | 415, 745, 778, 787 |
| MaeI | CTAG | 3 cut(s) | 368, 863, 1290 |
| MaeII | ACGT | 2 cut(s) | 435, 834 |
| MaeIII | GTNAC | 5 cut(s) | 75, 496, 603, 823, 1252 |
| MalI | GATC | 7 cut(s) | 338, 372, 600, 707, 891, 1262, 1284 |
| MbiI | CCGCTC | 7 cut(s) | 138, 287, 550, 763, 841, 1238, 1271 |
| MboI | GATC | 7 cut(s) | 336, 370, 598, 705, 889, 1260, 1282 |
| MboII | GAAGA | 9 cut(s) | 326, 329, 365, 431, 475, 526, 745, 1030, 1059 |
| MflI | RGATCY | 2 cut(s) | 336, 370 |
| MhlI | GDGCHC | 1 cut(s) | 630 |
| MluCI | AATT | 3 cut(s) | 158, 269, 361 |
| MlyI | GAGTC | 1 cut(s) | 904 |
| MmeI | TCCRAC | 3 cut(s) | 246, 298, 1281 |
| MseI | TTAA | 2 cut(s) | 261, 942 |
| MspA1I | CMGCKG | 4 cut(s) | 460, 794, 929, 1337 |
| MspI | CCGG | 6 cut(s) | 45, 387, 509, 679, 830, 1157 |
| MspR9I | CCNGG | 3 cut(s) | 679, 680, 859 |
| Mva1269I | GAATGC | 1 cut(s) | 241 |
| MvaI | CCWGG | 1 cut(s) | 859 |
| MvnI | CGCG | 2 cut(s) | 310, 312 |
| NciI | CCSGG | 2 cut(s) | 679, 680 |
| NdeII | GATC | 7 cut(s) | 336, 370, 598, 705, 889, 1260, 1282 |
| NlaIII | CATG | 2 cut(s) | 650, 854 |
| NmeAIII | GCCGAG | 1 cut(s) | 596 |
| NmuCI | GTSAC | 2 cut(s) | 496, 603 |
| NspV | TTCGAA | 1 cut(s) | 668 |
| PaeR7I | CTCGAG | 1 cut(s) | 1233 |
| PctI | GAATGC | 1 cut(s) | 241 |
| PfeI | GAWTC | 2 cut(s) | 169, 576 |
| PflFI | GACNNNGTC | 2 cut(s) | 851, 1040 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1038, 1099 |
| PleI | GAGTC | 1 cut(s) | 904 |
| PpsI | GAGTC | 1 cut(s) | 904 |
| PpuMI | RGGWCCY | 1 cut(s) | 189 |
| Psp5II | RGGWCCY | 1 cut(s) | 189 |
| Psp6I | CCWGG | 1 cut(s) | 857 |
| PspFI | CCCAGC | 2 cut(s) | 390, 553 |
| PspGI | CCWGG | 1 cut(s) | 857 |
| PspPI | GGNCC | 4 cut(s) | 189, 289, 478, 506 |
| PspPPI | RGGWCCY | 1 cut(s) | 189 |
| PspXI | VCTCGAGB | 1 cut(s) | 1233 |
| PstI | CTGCAG | 1 cut(s) | 928 |
| PsuI | RGATCY | 2 cut(s) | 336, 370 |
| PsyI | GACNNNGTC | 2 cut(s) | 851, 1040 |
| PvuII | CAGCTG | 1 cut(s) | 929 |
| RsaI | GTAC | 4 cut(s) | 221, 959, 1123, 1246 |
| RsaNI | GTAC | 4 cut(s) | 220, 958, 1122, 1245 |
| SalI | GTCGAC | 1 cut(s) | 404 |
| SaqAI | TTAA | 2 cut(s) | 261, 942 |
| Sau3AI | GATC | 7 cut(s) | 336, 370, 598, 705, 889, 1260, 1282 |
| Sau96I | GGNCC | 4 cut(s) | 189, 289, 478, 506 |
| SchI | GAGTC | 1 cut(s) | 904 |
| ScrFI | CCNGG | 3 cut(s) | 679, 680, 859 |
| SduI | GDGCHC | 1 cut(s) | 630 |
| SfaNI | GCATC | 4 cut(s) | 415, 745, 778, 787 |
| SfcI | CTRYAG | 2 cut(s) | 298, 924 |
| Sfr274I | CTCGAG | 1 cut(s) | 1233 |
| SfuI | TTCGAA | 1 cut(s) | 668 |
| SinI | GGWCC | 1 cut(s) | 189 |
| SlaI | CTCGAG | 1 cut(s) | 1233 |
| SmaI | CCCGGG | 1 cut(s) | 680 |
| SmlI | CTYRAG | 1 cut(s) | 1233 |
| SmoI | CTYRAG | 1 cut(s) | 1233 |
| Sse9I | AATT | 3 cut(s) | 158, 269, 361 |
| SspMI | CTAG | 3 cut(s) | 368, 863, 1290 |
| StyD4I | CCNGG | 3 cut(s) | 677, 678, 857 |
| StyI | CCWWGG | 3 cut(s) | 109, 774, 1093 |
| TaaI | ACNGT | 4 cut(s) | 64, 496, 502, 746 |
| TaiI | ACGT | 2 cut(s) | 438, 837 |
| TaqI | TCGA | 8 cut(s) | 165, 233, 405, 668, 708, 950, 1110, 1234 |
| TasI | AATT | 3 cut(s) | 158, 269, 361 |
| TatI | WGTACW | 1 cut(s) | 957 |
| TauI | GCSGC | 7 cut(s) | 106, 345, 553, 794, 983, 1318, 1337 |
| TfiI | GAWTC | 2 cut(s) | 169, 576 |
| Tru1I | TTAA | 2 cut(s) | 261, 942 |
| Tru9I | TTAA | 2 cut(s) | 261, 942 |
| TscAI | CASTG | 1 cut(s) | 997 |
| TseFI | GTSAC | 2 cut(s) | 496, 603 |
| TseI | GCWGC | 7 cut(s) | 662, 691, 804, 899, 926, 1012, 1223 |
| Tsp45I | GTSAC | 2 cut(s) | 496, 603 |
| TspGWI | ACGGA | 2 cut(s) | 625, 968 |
| TspMI | CCCGGG | 1 cut(s) | 678 |
| TspRI | CASTG | 1 cut(s) | 997 |
| Tth111I | GACNNNGTC | 2 cut(s) | 851, 1040 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1038, 1099 |
| VpaK11BI | GGWCC | 1 cut(s) | 189 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 884 |
| XapI | RAATTY | 1 cut(s) | 269 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 116 |
| XhoI | CTCGAG | 1 cut(s) | 1233 |
| XmaI | CCCGGG | 1 cut(s) | 678 |
| XmiI | GTMKAC | 1 cut(s) | 405 |
| XspI | CTAG | 3 cut(s) | 368, 863, 1290 |