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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 434, 470 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 480 |
| AccBSI | CCGCTC | 2 cut(s) | 178, 744 |
| AccII | CGCG | 1 cut(s) | 357 |
| AcoI | YGGCCR | 2 cut(s) | 162, 246 |
| AcyI | GRCGYC | 1 cut(s) | 14 |
| AfaI | GTAC | 3 cut(s) | 401, 541, 694 |
| AflIII | ACRYGT | 1 cut(s) | 222 |
| AgsI | TTSAA | 1 cut(s) | 269 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 708 |
| AjnI | CCWGG | 2 cut(s) | 559, 666 |
| AluBI | AGCT | 3 cut(s) | 43, 160, 515 |
| AluI | AGCT | 3 cut(s) | 43, 160, 515 |
| Alw21I | GWGCWC | 1 cut(s) | 45 |
| Alw26I | GTCTC | 1 cut(s) | 695 |
| Ama87I | CYCGRG | 2 cut(s) | 681, 720 |
| AoxI | GGCC | 7 cut(s) | 61, 84, 126, 162, 246, 300, 673 |
| ApeKI | GCWGC | 6 cut(s) | 232, 359, 362, 422, 457, 460 |
| AspLEI | GCGC | 1 cut(s) | 359 |
| AspS9I | GGNCC | 4 cut(s) | 61, 85, 673, 726 |
| AsuC2I | CCSGG | 2 cut(s) | 682, 683 |
| AsuHPI | GGTGA | 3 cut(s) | 335, 496, 629 |
| AsuNHI | GCTAGC | 2 cut(s) | 757, 767 |
| AvaI | CYCGRG | 2 cut(s) | 681, 720 |
| AvaII | GGWCC | 1 cut(s) | 726 |
| AxyI | CCTNAGG | 1 cut(s) | 345 |
| BanI | GGYRCC | 2 cut(s) | 434, 470 |
| BanII | GRGCYC | 2 cut(s) | 45, 344 |
| BauI | CACGAG | 1 cut(s) | 150 |
| Bbv12I | GWGCWC | 1 cut(s) | 45 |
| BbvI | GCAGC | 6 cut(s) | 219, 346, 349, 434, 444, 472 |
| BccI | CCATC | 2 cut(s) | 482, 683 |
| BceAI | ACGGC | 2 cut(s) | 149, 356 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 119, 153 |
| BciT130I | CCWGG | 2 cut(s) | 561, 668 |
| BcnI | CCSGG | 2 cut(s) | 682, 683 |
| BcoDI | GTCTC | 1 cut(s) | 695 |
| BfaI | CTAG | 3 cut(s) | 708, 758, 768 |
| BfmI | CTRYAG | 2 cut(s) | 65, 458 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 299 |
| Bme1390I | CCNGG | 4 cut(s) | 561, 668, 682, 683 |
| Bme18I | GGWCC | 1 cut(s) | 726 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 708 |
| BmeT110I | CYCGRG | 2 cut(s) | 681, 720 |
| BmgT120I | GGNCC | 4 cut(s) | 61, 85, 673, 726 |
| BmiI | GGNNCC | 5 cut(s) | 353, 436, 472, 665, 727 |
| BmrFI | CCNGG | 4 cut(s) | 561, 668, 682, 683 |
| BmsI | GCATC | 4 cut(s) | 127, 486, 500, 773 |
| BmtI | GCTAGC | 2 cut(s) | 761, 771 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 605, 637 |
| BpmI | CTGGAG | 1 cut(s) | 338 |
| Bpu10I | CCTNAGC | 3 cut(s) | 44, 252, 338 |
| BpuMI | CCSGG | 2 cut(s) | 682, 683 |
| Bsa29I | ATCGAT | 2 cut(s) | 477, 494 |
| BsaHI | GRCGYC | 1 cut(s) | 14 |
| BsaI | GGTCTC | 1 cut(s) | 695 |
| BsaJI | CCNNGG | 9 cut(s) | 7, 303, 372, 438, 559, 645, 681, 682, 721 |
| Bse118I | RCCGGY | 1 cut(s) | 499 |
| Bse1I | ACTGG | 1 cut(s) | 775 |
| Bse21I | CCTNAGG | 1 cut(s) | 345 |
| Bse3DI | GCAATG | 1 cut(s) | 417 |
| BseBI | CCWGG | 2 cut(s) | 561, 668 |
| BseCI | ATCGAT | 2 cut(s) | 477, 494 |
| BseDI | CCNNGG | 9 cut(s) | 7, 303, 372, 438, 559, 645, 681, 682, 721 |
| BseGI | GGATG | 1 cut(s) | 694 |
| BseMI | GCAATG | 1 cut(s) | 417 |
| BseMII | CTCAG | 4 cut(s) | 58, 329, 336, 638 |
| BseNI | ACTGG | 1 cut(s) | 775 |
| BseRI | GAGGAG | 1 cut(s) | 65 |
| BseXI | GCAGC | 6 cut(s) | 219, 346, 349, 434, 444, 472 |
| BseYI | CCCAGC | 1 cut(s) | 659 |
| Bsh1236I | CGCG | 1 cut(s) | 357 |
| Bsh1285I | CGRYCG | 1 cut(s) | 504 |
| BshFI | GGCC | 7 cut(s) | 63, 86, 128, 164, 248, 302, 675 |
| BshNI | GGYRCC | 2 cut(s) | 434, 470 |
| BshVI | ATCGAT | 2 cut(s) | 477, 494 |
| BsiEI | CGRYCG | 1 cut(s) | 504 |
| BsiHKAI | GWGCWC | 1 cut(s) | 45 |
| BsiHKCI | CYCGRG | 2 cut(s) | 681, 720 |
| BsiSI | CCGG | 3 cut(s) | 500, 611, 682 |
| BslFI | GGGAC | 4 cut(s) | 86, 211, 637, 696 |
| BsmAI | GTCTC | 1 cut(s) | 695 |
| BsmFI | GGGAC | 4 cut(s) | 86, 211, 637, 696 |
| BsnI | GGCC | 7 cut(s) | 63, 86, 128, 164, 248, 302, 675 |
| Bso31I | GGTCTC | 1 cut(s) | 695 |
| BsoBI | CYCGRG | 2 cut(s) | 681, 720 |
| Bsp1286I | GDGCHC | 2 cut(s) | 45, 344 |
| Bsp19I | CCATGG | 1 cut(s) | 438 |
| BspANI | GGCC | 7 cut(s) | 63, 86, 128, 164, 248, 302, 675 |
| BspCNI | CTCAG | 4 cut(s) | 57, 330, 337, 637 |
| BspDI | ATCGAT | 2 cut(s) | 477, 494 |
| BspFNI | CGCG | 1 cut(s) | 357 |
| BspLI | GGNNCC | 5 cut(s) | 353, 436, 472, 665, 727 |
| BspMAI | CTGCAG | 1 cut(s) | 462 |
| BspOI | GCTAGC | 2 cut(s) | 761, 771 |
| BspT107I | GGYRCC | 2 cut(s) | 434, 470 |
| BspTNI | GGTCTC | 1 cut(s) | 695 |
| BsrBI | CCGCTC | 2 cut(s) | 178, 744 |
| BsrDI | GCAATG | 1 cut(s) | 417 |
| BsrFI | RCCGGY | 1 cut(s) | 499 |
| BsrI | ACTGG | 1 cut(s) | 775 |
| BssAI | RCCGGY | 1 cut(s) | 499 |
| BssECI | CCNNGG | 9 cut(s) | 7, 303, 372, 438, 559, 645, 681, 682, 721 |
| BssNI | GRCGYC | 1 cut(s) | 14 |
| BssSI | CACGAG | 1 cut(s) | 150 |
| BssT1I | CCWWGG | 2 cut(s) | 7, 438 |
| Bst2BI | CACGAG | 1 cut(s) | 150 |
| Bst2UI | CCWGG | 2 cut(s) | 561, 668 |
| Bst4CI | ACNGT | 3 cut(s) | 134, 201, 642 |
| BstACI | GRCGYC | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 9 cut(s) | 61, 158, 162, 334, 513, 580, 673, 759, 769 |
| BstDEI | CTNAG | 6 cut(s) | 44, 252, 338, 345, 516, 624 |
| BstDSI | CCRYGG | 2 cut(s) | 372, 438 |
| BstF5I | GGATG | 1 cut(s) | 694 |
| BstFNI | CGCG | 1 cut(s) | 357 |
| BstHHI | GCGC | 1 cut(s) | 359 |
| BstMAI | GTCTC | 1 cut(s) | 695 |
| BstMCI | CGRYCG | 1 cut(s) | 504 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 146, 299, 365, 368, 428, 505 |
| BstNI | CCWGG | 2 cut(s) | 561, 668 |
| BstNSI | RCATGY | 1 cut(s) | 226 |
| BstSCI | CCNGG | 4 cut(s) | 559, 666, 680, 681 |
| BstSFI | CTRYAG | 2 cut(s) | 65, 458 |
| BstUI | CGCG | 1 cut(s) | 357 |
| BstV1I | GCAGC | 6 cut(s) | 219, 346, 349, 434, 444, 472 |
| Bsu15I | ATCGAT | 2 cut(s) | 477, 494 |
| Bsu36I | CCTNAGG | 1 cut(s) | 345 |
| BsuRI | GGCC | 7 cut(s) | 63, 86, 128, 164, 248, 302, 675 |
| BsuTUI | ATCGAT | 2 cut(s) | 477, 494 |
| BtgI | CCRYGG | 2 cut(s) | 372, 438 |
| BtsCI | GGATG | 1 cut(s) | 694 |
| BtsI | GCAGTG | 1 cut(s) | 552 |
| BtsIMutI | CAGTG | 2 cut(s) | 552, 782 |
| Cac8I | GCNNGC | 9 cut(s) | 61, 158, 162, 334, 513, 580, 673, 759, 769 |
| CfoI | GCGC | 1 cut(s) | 359 |
| Cfr10I | RCCGGY | 1 cut(s) | 499 |
| Cfr13I | GGNCC | 4 cut(s) | 61, 85, 673, 726 |
| Cfr9I | CCCGGG | 1 cut(s) | 681 |
| ClaI | ATCGAT | 2 cut(s) | 477, 494 |
| CseI | GACGC | 3 cut(s) | 3, 123, 155 |
| Csp6I | GTAC | 3 cut(s) | 400, 540, 693 |
| CviAII | CATG | 2 cut(s) | 223, 439 |
| CviQI | GTAC | 3 cut(s) | 400, 540, 693 |
| DdeI | CTNAG | 6 cut(s) | 44, 252, 338, 345, 516, 624 |
| DriI | GACNNNNNGTC | 1 cut(s) | 708 |
| EaeI | YGGCCR | 2 cut(s) | 162, 246 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 708 |
| EciI | GGCGGA | 1 cut(s) | 618 |
| Ecl136II | GAGCTC | 1 cut(s) | 43 |
| Eco130I | CCWWGG | 2 cut(s) | 7, 438 |
| Eco24I | GRGCYC | 2 cut(s) | 45, 344 |
| Eco31I | GGTCTC | 1 cut(s) | 695 |
| Eco47I | GGWCC | 1 cut(s) | 726 |
| Eco53kI | GAGCTC | 1 cut(s) | 43 |
| Eco81I | CCTNAGG | 1 cut(s) | 345 |
| Eco88I | CYCGRG | 2 cut(s) | 681, 720 |
| EcoICRI | GAGCTC | 1 cut(s) | 43 |
| EcoRII | CCWGG | 2 cut(s) | 559, 666 |
| EcoT14I | CCWWGG | 2 cut(s) | 7, 438 |
| EcoT38I | GRGCYC | 2 cut(s) | 45, 344 |
| ErhI | CCWWGG | 2 cut(s) | 7, 438 |
| FaeI | CATG | 2 cut(s) | 226, 442 |
| FaiI | YATR | 3 cut(s) | 224, 382, 440 |
| FaqI | GGGAC | 4 cut(s) | 86, 211, 637, 696 |
| FatI | CATG | 2 cut(s) | 222, 438 |
| FauI | CCCGC | 4 cut(s) | 52, 228, 341, 664 |
| FokI | GGATG | 1 cut(s) | 701 |
| FriOI | GRGCYC | 2 cut(s) | 45, 344 |
| FspBI | CTAG | 3 cut(s) | 708, 758, 768 |
| GlaI | GCGC | 1 cut(s) | 358 |
| GsaI | CCCAGC | 1 cut(s) | 663 |
| GsuI | CTGGAG | 1 cut(s) | 338 |
| HaeIII | GGCC | 7 cut(s) | 63, 86, 128, 164, 248, 302, 675 |
| HapII | CCGG | 3 cut(s) | 500, 611, 682 |
| HgaI | GACGC | 3 cut(s) | 3, 123, 155 |
| HhaI | GCGC | 1 cut(s) | 359 |
| Hin1I | GRCGYC | 1 cut(s) | 14 |
| Hin1II | CATG | 2 cut(s) | 226, 442 |
| Hin6I | GCGC | 1 cut(s) | 357 |
| HinP1I | GCGC | 1 cut(s) | 357 |
| HinfI | GANTC | 4 cut(s) | 284, 377, 620, 631 |
| HpaII | CCGG | 3 cut(s) | 500, 611, 682 |
| HphI | GGTGA | 3 cut(s) | 335, 496, 629 |
| Hpy188I | TCNGA | 2 cut(s) | 646, 730 |
| Hpy188III | TCNNGA | 1 cut(s) | 18 |
| Hpy99I | CGWCG | 1 cut(s) | 117 |
| HpyAV | CCTTC | 5 cut(s) | 256, 421, 460, 481, 783 |
| HpyCH4III | ACNGT | 3 cut(s) | 134, 201, 642 |
| HpyCH4V | TGCA | 2 cut(s) | 277, 460 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 146, 299, 365, 368, 428, 505 |
| HpyF3I | CTNAG | 6 cut(s) | 44, 252, 338, 345, 516, 624 |
| Hsp92I | GRCGYC | 1 cut(s) | 14 |
| Hsp92II | CATG | 2 cut(s) | 226, 442 |
| HspAI | GCGC | 1 cut(s) | 357 |
| LmnI | GCTCC | 3 cut(s) | 40, 214, 351 |
| Lsp1109I | GCAGC | 6 cut(s) | 219, 346, 349, 434, 444, 472 |
| LweI | GCATC | 4 cut(s) | 127, 486, 500, 773 |
| MaeI | CTAG | 3 cut(s) | 708, 758, 768 |
| MaeIII | GTNAC | 1 cut(s) | 617 |
| MbiI | CCGCTC | 2 cut(s) | 178, 744 |
| MhlI | GDGCHC | 2 cut(s) | 45, 344 |
| MlyI | GAGTC | 4 cut(s) | 293, 386, 614, 625 |
| MmeI | TCCRAC | 2 cut(s) | 192, 753 |
| MseI | TTAA | 1 cut(s) | 33 |
| MspA1I | CMGCKG | 2 cut(s) | 529, 628 |
| MspI | CCGG | 3 cut(s) | 500, 611, 682 |
| MspR9I | CCNGG | 4 cut(s) | 561, 668, 682, 683 |
| MvaI | CCWGG | 2 cut(s) | 561, 668 |
| MvnI | CGCG | 1 cut(s) | 357 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 146, 299, 365, 368, 428, 505 |
| NciI | CCSGG | 2 cut(s) | 682, 683 |
| NcoI | CCATGG | 1 cut(s) | 438 |
| NheI | GCTAGC | 2 cut(s) | 757, 767 |
| NlaIII | CATG | 2 cut(s) | 226, 442 |
| NlaIV | GGNNCC | 5 cut(s) | 353, 436, 472, 665, 727 |
| NmeAIII | GCCGAG | 1 cut(s) | 328 |
| NmuCI | GTSAC | 1 cut(s) | 617 |
| NspI | RCATGY | 1 cut(s) | 226 |
| PciI | ACATGT | 1 cut(s) | 222 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 480 |
| PleI | GAGTC | 4 cut(s) | 292, 385, 614, 625 |
| PpsI | GAGTC | 4 cut(s) | 292, 385, 614, 625 |
| PscI | ACATGT | 1 cut(s) | 222 |
| Psp124BI | GAGCTC | 1 cut(s) | 45 |
| Psp6I | CCWGG | 2 cut(s) | 559, 666 |
| PspFI | CCCAGC | 1 cut(s) | 659 |
| PspGI | CCWGG | 2 cut(s) | 559, 666 |
| PspN4I | GGNNCC | 5 cut(s) | 353, 436, 472, 665, 727 |
| PspPI | GGNCC | 4 cut(s) | 61, 85, 673, 726 |
| PstI | CTGCAG | 1 cut(s) | 462 |
| RsaI | GTAC | 3 cut(s) | 401, 541, 694 |
| RsaNI | GTAC | 3 cut(s) | 400, 540, 693 |
| SacI | GAGCTC | 1 cut(s) | 45 |
| SaqAI | TTAA | 1 cut(s) | 33 |
| Sau96I | GGNCC | 4 cut(s) | 61, 85, 673, 726 |
| SchI | GAGTC | 4 cut(s) | 293, 386, 614, 625 |
| ScrFI | CCNGG | 4 cut(s) | 561, 668, 682, 683 |
| SduI | GDGCHC | 2 cut(s) | 45, 344 |
| SfaNI | GCATC | 4 cut(s) | 127, 486, 500, 773 |
| SfcI | CTRYAG | 2 cut(s) | 65, 458 |
| SinI | GGWCC | 1 cut(s) | 726 |
| SmaI | CCCGGG | 1 cut(s) | 683 |
| SspMI | CTAG | 3 cut(s) | 708, 758, 768 |
| SstI | GAGCTC | 1 cut(s) | 45 |
| StyD4I | CCNGG | 4 cut(s) | 559, 666, 680, 681 |
| StyI | CCWWGG | 2 cut(s) | 7, 438 |
| TaaI | ACNGT | 3 cut(s) | 134, 201, 642 |
| TaqI | TCGA | 3 cut(s) | 108, 477, 494 |
| TaqII | GACCGA | 1 cut(s) | 431 |
| TatI | WGTACW | 1 cut(s) | 399 |
| Tru1I | TTAA | 1 cut(s) | 33 |
| Tru9I | TTAA | 1 cut(s) | 33 |
| TscAI | CASTG | 2 cut(s) | 559, 782 |
| TseFI | GTSAC | 1 cut(s) | 617 |
| TseI | GCWGC | 6 cut(s) | 232, 359, 362, 422, 457, 460 |
| Tsp45I | GTSAC | 1 cut(s) | 617 |
| TspMI | CCCGGG | 1 cut(s) | 681 |
| TspRI | CASTG | 2 cut(s) | 559, 782 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 480 |
| VpaK11BI | GGWCC | 1 cut(s) | 726 |
| XceI | RCATGY | 1 cut(s) | 226 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 445 |
| XmaI | CCCGGG | 1 cut(s) | 681 |
| XspI | CTAG | 3 cut(s) | 708, 758, 768 |