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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 38 |
| Acc36I | ACCTGC | 1 cut(s) | 38 |
| AccB1I | GGYRCC | 3 cut(s) | 26, 858, 894 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 904 |
| AccBSI | CCGCTC | 5 cut(s) | 307, 383, 602, 614, 1006 |
| AccI | GTMKAC | 1 cut(s) | 420 |
| AccII | CGCG | 6 cut(s) | 12, 32, 61, 161, 235, 1081 |
| AclI | AACGTT | 1 cut(s) | 589 |
| AclWI | GGATC | 2 cut(s) | 670, 689 |
| AcoI | YGGCCR | 3 cut(s) | 458, 670, 787 |
| AcuI | CTGAAG | 2 cut(s) | 428, 684 |
| AcyI | GRCGYC | 4 cut(s) | 27, 498, 895, 1056 |
| AfaI | GTAC | 5 cut(s) | 158, 302, 535, 825, 965 |
| AgsI | TTSAA | 1 cut(s) | 996 |
| AjiI | CACGTC | 1 cut(s) | 464 |
| AjnI | CCWGG | 3 cut(s) | 400, 511, 983 |
| AluBI | AGCT | 7 cut(s) | 150, 242, 584, 635, 867, 915, 948 |
| AluI | AGCT | 7 cut(s) | 150, 242, 584, 635, 867, 915, 948 |
| Alw21I | GWGCWC | 1 cut(s) | 85 |
| AlwI | GGATC | 2 cut(s) | 670, 689 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 512 |
| Ama87I | CYCGRG | 2 cut(s) | 267, 757 |
| AoxI | GGCC | 8 cut(s) | 138, 398, 458, 550, 670, 776, 787, 853 |
| ApeKI | GCWGC | 6 cut(s) | 119, 147, 239, 324, 884, 932 |
| AspLEI | GCGC | 5 cut(s) | 29, 47, 61, 897, 1083 |
| AspS9I | GGNCC | 4 cut(s) | 4, 163, 230, 776 |
| AsuC2I | CCSGG | 1 cut(s) | 357 |
| AsuHPI | GGTGA | 6 cut(s) | 62, 92, 363, 363, 430, 759 |
| AvaI | CYCGRG | 2 cut(s) | 267, 757 |
| AvaII | GGWCC | 3 cut(s) | 4, 163, 230 |
| BaeGI | GKGCMC | 1 cut(s) | 863 |
| BalI | TGGCCA | 1 cut(s) | 460 |
| BanI | GGYRCC | 3 cut(s) | 26, 858, 894 |
| BanII | GRGCYC | 1 cut(s) | 1004 |
| Bbv12I | GWGCWC | 1 cut(s) | 85 |
| BbvCI | CCTCAGC | 1 cut(s) | 769 |
| BbvI | GCAGC | 6 cut(s) | 131, 159, 251, 311, 896, 944 |
| BccI | CCATC | 2 cut(s) | 906, 944 |
| BceAI | ACGGC | 5 cut(s) | 72, 166, 411, 453, 763 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 543, 577 |
| BciT130I | CCWGG | 3 cut(s) | 402, 513, 985 |
| BcnI | CCSGG | 1 cut(s) | 357 |
| BfaI | CTAG | 3 cut(s) | 636, 741, 864 |
| BfmI | CTRYAG | 1 cut(s) | 882 |
| BfoI | RGCGCY | 2 cut(s) | 30, 898 |
| BfuAI | ACCTGC | 1 cut(s) | 38 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 723 |
| Bme1390I | CCNGG | 4 cut(s) | 357, 402, 513, 985 |
| Bme18I | GGWCC | 3 cut(s) | 4, 163, 230 |
| BmeT110I | CYCGRG | 2 cut(s) | 267, 757 |
| BmgBI | CACGTC | 1 cut(s) | 464 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 163, 230, 776 |
| BmiI | GGNNCC | 9 cut(s) | 5, 28, 231, 262, 274, 777, 860, 896, 1001 |
| BmrFI | CCNGG | 4 cut(s) | 357, 402, 513, 985 |
| BmrI | ACTGGG | 2 cut(s) | 235, 914 |
| BmsI | GCATC | 3 cut(s) | 528, 551, 910 |
| BmuI | ACTGGG | 2 cut(s) | 235, 914 |
| BoxI | GACNNNNGTC | 1 cut(s) | 426 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1029, 1061 |
| BpmI | CTGGAG | 2 cut(s) | 172, 423 |
| Bpu10I | CCTNAGC | 3 cut(s) | 676, 769, 1007 |
| BpuMI | CCSGG | 1 cut(s) | 357 |
| BsaHI | GRCGYC | 4 cut(s) | 27, 498, 895, 1056 |
| BsaJI | CCNNGG | 7 cut(s) | 30, 268, 511, 575, 784, 983, 1069 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 351, 381 |
| Bse118I | RCCGGY | 2 cut(s) | 855, 923 |
| Bse1I | ACTGG | 3 cut(s) | 230, 909, 1064 |
| BseBI | CCWGG | 3 cut(s) | 402, 513, 985 |
| BseDI | CCNNGG | 7 cut(s) | 30, 268, 511, 575, 784, 983, 1069 |
| BseMII | CTCAG | 3 cut(s) | 718, 760, 1021 |
| BseNI | ACTGG | 3 cut(s) | 230, 909, 1064 |
| BseSI | GKGCMC | 1 cut(s) | 863 |
| BseX3I | CGGCCG | 1 cut(s) | 787 |
| BseXI | GCAGC | 6 cut(s) | 131, 159, 251, 311, 896, 944 |
| BseYI | CCCAGC | 1 cut(s) | 386 |
| BsgI | GTGCAG | 1 cut(s) | 951 |
| Bsh1236I | CGCG | 6 cut(s) | 12, 32, 61, 161, 235, 1081 |
| Bsh1285I | CGRYCG | 4 cut(s) | 420, 424, 790, 928 |
| BshFI | GGCC | 8 cut(s) | 140, 400, 460, 552, 672, 778, 789, 855 |
| BshNI | GGYRCC | 3 cut(s) | 26, 858, 894 |
| BsiEI | CGRYCG | 4 cut(s) | 420, 424, 790, 928 |
| BsiHKAI | GWGCWC | 1 cut(s) | 85 |
| BsiHKCI | CYCGRG | 2 cut(s) | 267, 757 |
| BsiSI | CCGG | 3 cut(s) | 356, 856, 924 |
| BsiWI | CGTACG | 1 cut(s) | 533 |
| BslFI | GGGAC | 3 cut(s) | 17, 243, 635 |
| BsmFI | GGGAC | 3 cut(s) | 17, 243, 635 |
| BsnI | GGCC | 8 cut(s) | 140, 400, 460, 552, 672, 778, 789, 855 |
| BsoBI | CYCGRG | 2 cut(s) | 267, 757 |
| Bsp1286I | GDGCHC | 3 cut(s) | 85, 863, 1004 |
| Bsp143I | GATC | 3 cut(s) | 662, 694, 730 |
| BspANI | GGCC | 8 cut(s) | 140, 400, 460, 552, 672, 778, 789, 855 |
| BspCNI | CTCAG | 3 cut(s) | 719, 761, 1020 |
| BspFNI | CGCG | 6 cut(s) | 12, 32, 61, 161, 235, 1081 |
| BspLI | GGNNCC | 9 cut(s) | 5, 28, 231, 262, 274, 777, 860, 896, 1001 |
| BspMAI | CTGCAG | 1 cut(s) | 886 |
| BspMI | ACCTGC | 1 cut(s) | 38 |
| BspPI | GGATC | 2 cut(s) | 670, 689 |
| BspT107I | GGYRCC | 3 cut(s) | 26, 858, 894 |
| BsrBI | CCGCTC | 5 cut(s) | 307, 383, 602, 614, 1006 |
| BsrFI | RCCGGY | 2 cut(s) | 855, 923 |
| BsrI | ACTGG | 3 cut(s) | 230, 909, 1064 |
| BssAI | RCCGGY | 2 cut(s) | 855, 923 |
| BssECI | CCNNGG | 7 cut(s) | 30, 268, 511, 575, 784, 983, 1069 |
| BssMI | GATC | 3 cut(s) | 662, 694, 730 |
| BssNI | GRCGYC | 4 cut(s) | 27, 498, 895, 1056 |
| Bst2UI | CCWGG | 3 cut(s) | 402, 513, 985 |
| Bst4CI | ACNGT | 2 cut(s) | 351, 625 |
| Bst6I | CTCTTC | 1 cut(s) | 199 |
| BstACI | GRCGYC | 4 cut(s) | 27, 498, 895, 1056 |
| BstC8I | GCNNGC | 7 cut(s) | 17, 142, 237, 259, 381, 582, 1004 |
| BstDEI | CTNAG | 5 cut(s) | 676, 727, 769, 940, 1007 |
| BstDSI | CCRYGG | 2 cut(s) | 30, 575 |
| BstEII | GGTNACC | 1 cut(s) | 351 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 702 |
| BstFNI | CGCG | 6 cut(s) | 12, 32, 61, 161, 235, 1081 |
| BstH2I | RGCGCY | 2 cut(s) | 30, 898 |
| BstHHI | GCGC | 5 cut(s) | 29, 47, 61, 897, 1083 |
| BstKTI | GATC | 3 cut(s) | 665, 697, 733 |
| BstMBI | GATC | 3 cut(s) | 662, 694, 730 |
| BstMCI | CGRYCG | 4 cut(s) | 420, 424, 790, 928 |
| BstNI | CCWGG | 3 cut(s) | 402, 513, 985 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 426 |
| BstPI | GGTNACC | 1 cut(s) | 351 |
| BstSCI | CCNGG | 4 cut(s) | 355, 400, 511, 983 |
| BstSFI | CTRYAG | 1 cut(s) | 882 |
| BstSLI | GKGCMC | 1 cut(s) | 863 |
| BstUI | CGCG | 6 cut(s) | 12, 32, 61, 161, 235, 1081 |
| BstV1I | GCAGC | 6 cut(s) | 131, 159, 251, 311, 896, 944 |
| BstX2I | RGATCY | 1 cut(s) | 694 |
| BstYI | RGATCY | 1 cut(s) | 694 |
| BstZI | CGGCCG | 1 cut(s) | 787 |
| BsuRI | GGCC | 8 cut(s) | 140, 400, 460, 552, 672, 778, 789, 855 |
| BtgI | CCRYGG | 2 cut(s) | 30, 575 |
| BtgZI | GCGATG | 1 cut(s) | 574 |
| BtrI | CACGTC | 1 cut(s) | 464 |
| BtsI | GCAGTG | 2 cut(s) | 85, 853 |
| BtsIMutI | CAGTG | 3 cut(s) | 85, 834, 853 |
| BveI | ACCTGC | 1 cut(s) | 38 |
| Cac8I | GCNNGC | 7 cut(s) | 17, 142, 237, 259, 381, 582, 1004 |
| CaiI | CAGNNNCTG | 1 cut(s) | 512 |
| CfoI | GCGC | 5 cut(s) | 29, 47, 61, 897, 1083 |
| Cfr10I | RCCGGY | 2 cut(s) | 855, 923 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 163, 230, 776 |
| Cfr42I | CCGCGG | 1 cut(s) | 33 |
| CseI | GACGC | 3 cut(s) | 18, 487, 1064 |
| Csp6I | GTAC | 5 cut(s) | 157, 301, 534, 824, 964 |
| CviAII | CATG | 2 cut(s) | 480, 990 |
| CviQI | GTAC | 5 cut(s) | 157, 301, 534, 824, 964 |
| DdeI | CTNAG | 5 cut(s) | 676, 727, 769, 940, 1007 |
| DinI | GGCGCC | 2 cut(s) | 28, 896 |
| DpnI | GATC | 3 cut(s) | 664, 696, 732 |
| DpnII | GATC | 3 cut(s) | 662, 694, 730 |
| EaeI | YGGCCR | 3 cut(s) | 458, 670, 787 |
| EagI | CGGCCG | 1 cut(s) | 787 |
| Eam1104I | CTCTTC | 1 cut(s) | 199 |
| EarI | CTCTTC | 1 cut(s) | 199 |
| EciI | GGCGGA | 5 cut(s) | 253, 701, 834, 940, 1042 |
| EclXI | CGGCCG | 1 cut(s) | 787 |
| Eco147I | AGGCCT | 1 cut(s) | 140 |
| Eco24I | GRGCYC | 1 cut(s) | 1004 |
| Eco47I | GGWCC | 3 cut(s) | 4, 163, 230 |
| Eco52I | CGGCCG | 1 cut(s) | 787 |
| Eco57I | CTGAAG | 2 cut(s) | 428, 684 |
| Eco88I | CYCGRG | 2 cut(s) | 267, 757 |
| Eco91I | GGTNACC | 1 cut(s) | 351 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 702 |
| EcoO65I | GGTNACC | 1 cut(s) | 351 |
| EcoRII | CCWGG | 3 cut(s) | 400, 511, 983 |
| EcoT38I | GRGCYC | 1 cut(s) | 1004 |
| EgeI | GGCGCC | 2 cut(s) | 28, 896 |
| EheI | GGCGCC | 2 cut(s) | 28, 896 |
| FaeI | CATG | 2 cut(s) | 483, 993 |
| FaiI | YATR | 4 cut(s) | 105, 481, 806, 991 |
| FaqI | GGGAC | 3 cut(s) | 17, 243, 635 |
| FatI | CATG | 2 cut(s) | 479, 989 |
| FauI | CCCGC | 5 cut(s) | 54, 192, 284, 1008, 1011 |
| FblI | GTMKAC | 1 cut(s) | 420 |
| FriOI | GRGCYC | 1 cut(s) | 1004 |
| FspBI | CTAG | 3 cut(s) | 636, 741, 864 |
| GlaI | GCGC | 5 cut(s) | 28, 46, 60, 896, 1082 |
| GsaI | CCCAGC | 1 cut(s) | 390 |
| GsuI | CTGGAG | 2 cut(s) | 172, 423 |
| HaeII | RGCGCY | 2 cut(s) | 30, 898 |
| HaeIII | GGCC | 8 cut(s) | 140, 400, 460, 552, 672, 778, 789, 855 |
| HapII | CCGG | 3 cut(s) | 356, 856, 924 |
| HgaI | GACGC | 3 cut(s) | 18, 487, 1064 |
| HhaI | GCGC | 5 cut(s) | 29, 47, 61, 897, 1083 |
| Hin1I | GRCGYC | 4 cut(s) | 27, 498, 895, 1056 |
| Hin1II | CATG | 2 cut(s) | 483, 993 |
| Hin6I | GCGC | 5 cut(s) | 27, 45, 59, 895, 1081 |
| HinP1I | GCGC | 5 cut(s) | 27, 45, 59, 895, 1081 |
| HincII | GTYRAC | 2 cut(s) | 186, 421 |
| HindII | GTYRAC | 2 cut(s) | 186, 421 |
| HindIII | AAGCTT | 1 cut(s) | 913 |
| HinfI | GANTC | 5 cut(s) | 315, 435, 708, 801, 1044 |
| HpaII | CCGG | 3 cut(s) | 356, 856, 924 |
| HphI | GGTGA | 6 cut(s) | 62, 92, 363, 363, 430, 759 |
| Hpy166II | GTNNAC | 2 cut(s) | 186, 421 |
| Hpy188I | TCNGA | 1 cut(s) | 1070 |
| Hpy188III | TCNNGA | 1 cut(s) | 1035 |
| Hpy8I | GTNNAC | 2 cut(s) | 186, 421 |
| Hpy99I | CGWCG | 2 cut(s) | 12, 468 |
| HpyAV | CCTTC | 6 cut(s) | 452, 708, 824, 845, 884, 990 |
| HpyCH4III | ACNGT | 2 cut(s) | 351, 625 |
| HpyCH4IV | ACGT | 2 cut(s) | 463, 589 |
| HpyCH4V | TGCA | 2 cut(s) | 884, 932 |
| HpyF3I | CTNAG | 5 cut(s) | 676, 727, 769, 940, 1007 |
| HpySE526I | ACGT | 2 cut(s) | 463, 589 |
| Hsp92I | GRCGYC | 4 cut(s) | 27, 498, 895, 1056 |
| Hsp92II | CATG | 2 cut(s) | 483, 993 |
| HspAI | GCGC | 5 cut(s) | 27, 45, 59, 895, 1081 |
| KasI | GGCGCC | 2 cut(s) | 26, 894 |
| KspI | CCGCGG | 1 cut(s) | 33 |
| Kzo9I | GATC | 3 cut(s) | 662, 694, 730 |
| LmnI | GCTCC | 7 cut(s) | 88, 116, 266, 278, 611, 953, 999 |
| Lsp1109I | GCAGC | 6 cut(s) | 131, 159, 251, 311, 896, 944 |
| LweI | GCATC | 3 cut(s) | 528, 551, 910 |
| MaeI | CTAG | 3 cut(s) | 636, 741, 864 |
| MaeII | ACGT | 2 cut(s) | 463, 589 |
| MaeIII | GTNAC | 3 cut(s) | 98, 221, 351 |
| MalI | GATC | 3 cut(s) | 664, 696, 732 |
| MbiI | CCGCTC | 5 cut(s) | 307, 383, 602, 614, 1006 |
| MboI | GATC | 3 cut(s) | 662, 694, 730 |
| MboII | GAAGA | 4 cut(s) | 83, 216, 222, 695 |
| MflI | RGATCY | 1 cut(s) | 694 |
| MhlI | GDGCHC | 3 cut(s) | 85, 863, 1004 |
| MlsI | TGGCCA | 1 cut(s) | 460 |
| MluNI | TGGCCA | 1 cut(s) | 460 |
| Mly113I | GGCGCC | 2 cut(s) | 27, 895 |
| MlyI | GAGTC | 4 cut(s) | 309, 717, 810, 1038 |
| MmeI | TCCRAC | 1 cut(s) | 94 |
| Mox20I | TGGCCA | 1 cut(s) | 460 |
| MscI | TGGCCA | 1 cut(s) | 460 |
| Msp20I | TGGCCA | 1 cut(s) | 460 |
| MspA1I | CMGCKG | 7 cut(s) | 32, 150, 173, 279, 294, 397, 795 |
| MspI | CCGG | 3 cut(s) | 356, 856, 924 |
| MspR9I | CCNGG | 4 cut(s) | 357, 402, 513, 985 |
| MvaI | CCWGG | 3 cut(s) | 402, 513, 985 |
| MvnI | CGCG | 6 cut(s) | 12, 32, 61, 161, 235, 1081 |
| NarI | GGCGCC | 2 cut(s) | 27, 895 |
| NciI | CCSGG | 1 cut(s) | 357 |
| NdeII | GATC | 3 cut(s) | 662, 694, 730 |
| NlaIII | CATG | 2 cut(s) | 483, 993 |
| NlaIV | GGNNCC | 9 cut(s) | 5, 28, 231, 262, 274, 777, 860, 896, 1001 |
| NmeAIII | GCCGAG | 2 cut(s) | 359, 765 |
| NmuCI | GTSAC | 2 cut(s) | 98, 351 |
| PaqCI | CACCTGC | 1 cut(s) | 38 |
| PceI | AGGCCT | 1 cut(s) | 140 |
| PfeI | GAWTC | 1 cut(s) | 435 |
| Pfl23II | CGTACG | 1 cut(s) | 533 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 904 |
| PleI | GAGTC | 4 cut(s) | 309, 716, 809, 1038 |
| PluTI | GGCGCC | 2 cut(s) | 30, 898 |
| PpsI | GAGTC | 4 cut(s) | 309, 716, 809, 1038 |
| PshAI | GACNNNNGTC | 1 cut(s) | 426 |
| Psp1406I | AACGTT | 1 cut(s) | 589 |
| Psp6I | CCWGG | 3 cut(s) | 400, 511, 983 |
| PspEI | GGTNACC | 1 cut(s) | 351 |
| PspFI | CCCAGC | 1 cut(s) | 386 |
| PspGI | CCWGG | 3 cut(s) | 400, 511, 983 |
| PspLI | CGTACG | 1 cut(s) | 533 |
| PspN4I | GGNNCC | 9 cut(s) | 5, 28, 231, 262, 274, 777, 860, 896, 1001 |
| PspPI | GGNCC | 4 cut(s) | 4, 163, 230, 776 |
| PstI | CTGCAG | 1 cut(s) | 886 |
| PstNI | CAGNNNCTG | 1 cut(s) | 512 |
| PsuI | RGATCY | 1 cut(s) | 694 |
| PvuII | CAGCTG | 1 cut(s) | 150 |
| RsaI | GTAC | 5 cut(s) | 158, 302, 535, 825, 965 |
| RsaNI | GTAC | 5 cut(s) | 157, 301, 534, 824, 964 |
| SacII | CCGCGG | 1 cut(s) | 33 |
| SalI | GTCGAC | 1 cut(s) | 419 |
| Sau3AI | GATC | 3 cut(s) | 662, 694, 730 |
| Sau96I | GGNCC | 4 cut(s) | 4, 163, 230, 776 |
| SchI | GAGTC | 4 cut(s) | 309, 717, 810, 1038 |
| ScrFI | CCNGG | 4 cut(s) | 357, 402, 513, 985 |
| SduI | GDGCHC | 3 cut(s) | 85, 863, 1004 |
| SfaNI | GCATC | 3 cut(s) | 528, 551, 910 |
| SfcI | CTRYAG | 1 cut(s) | 882 |
| SfoI | GGCGCC | 2 cut(s) | 28, 896 |
| Sfr303I | CCGCGG | 1 cut(s) | 33 |
| SgrBI | CCGCGG | 1 cut(s) | 33 |
| SinI | GGWCC | 3 cut(s) | 4, 163, 230 |
| SseBI | AGGCCT | 1 cut(s) | 140 |
| SspDI | GGCGCC | 2 cut(s) | 26, 894 |
| SspMI | CTAG | 3 cut(s) | 636, 741, 864 |
| StuI | AGGCCT | 1 cut(s) | 140 |
| StyD4I | CCNGG | 4 cut(s) | 355, 400, 511, 983 |
| TaaI | ACNGT | 2 cut(s) | 351, 625 |
| TaiI | ACGT | 2 cut(s) | 466, 592 |
| TaqI | TCGA | 4 cut(s) | 69, 420, 901, 918 |
| TaqII | GACCGA | 3 cut(s) | 21, 406, 855 |
| TatI | WGTACW | 1 cut(s) | 823 |
| TfiI | GAWTC | 1 cut(s) | 435 |
| TscAI | CASTG | 3 cut(s) | 85, 841, 853 |
| TseFI | GTSAC | 2 cut(s) | 98, 351 |
| TseI | GCWGC | 6 cut(s) | 119, 147, 239, 324, 884, 932 |
| Tsp45I | GTSAC | 2 cut(s) | 98, 351 |
| TspGWI | ACGGA | 2 cut(s) | 105, 1067 |
| TspRI | CASTG | 3 cut(s) | 85, 841, 853 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 904 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 163, 230 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 702 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 110, 468, 509 |
| XmiI | GTMKAC | 1 cut(s) | 420 |
| XspI | CTAG | 3 cut(s) | 636, 741, 864 |