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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 199, 238 |
| AccBSI | CCGCTC | 3 cut(s) | 502, 529, 683 |
| AccI | GTMKAC | 2 cut(s) | 39, 731 |
| AclWI | GGATC | 2 cut(s) | 585, 604 |
| AcoI | YGGCCR | 1 cut(s) | 507 |
| AcsI | RAATTY | 1 cut(s) | 455 |
| AcuI | CTGAAG | 1 cut(s) | 593 |
| AcyI | GRCGYC | 1 cut(s) | 239 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 70, 210, 284, 388, 516, 619 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 57, 89 |
| AleI | CACNNNNGTG | 1 cut(s) | 263 |
| AluBI | AGCT | 1 cut(s) | 152 |
| AluI | AGCT | 1 cut(s) | 152 |
| Alw21I | GWGCWC | 1 cut(s) | 294 |
| Alw26I | GTCTC | 2 cut(s) | 335, 547 |
| AlwI | GGATC | 2 cut(s) | 585, 604 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 704 |
| AoxI | GGCC | 6 cut(s) | 21, 118, 330, 378, 507, 767 |
| ApeKI | GCWGC | 4 cut(s) | 173, 184, 250, 698 |
| ApoI | RAATTY | 1 cut(s) | 455 |
| AspLEI | GCGC | 3 cut(s) | 58, 178, 241 |
| AspS9I | GGNCC | 4 cut(s) | 22, 119, 352, 379 |
| AsuHPI | GGTGA | 2 cut(s) | 658, 674 |
| AvaII | GGWCC | 1 cut(s) | 352 |
| BaeGI | GKGCMC | 1 cut(s) | 204 |
| BanI | GGYRCC | 2 cut(s) | 199, 238 |
| Bbv12I | GWGCWC | 1 cut(s) | 294 |
| BbvCI | CCTCAGC | 2 cut(s) | 642, 755 |
| BbvI | GCAGC | 4 cut(s) | 160, 196, 262, 710 |
| BccI | CCATC | 1 cut(s) | 277 |
| BceAI | ACGGC | 2 cut(s) | 142, 494 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 422, 456 |
| BcoDI | GTCTC | 2 cut(s) | 335, 547 |
| BfaI | CTAG | 3 cut(s) | 17, 546, 551 |
| BfoI | RGCGCY | 2 cut(s) | 59, 242 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 126 |
| BlpI | GCTNAGC | 1 cut(s) | 59 |
| Bme18I | GGWCC | 1 cut(s) | 352 |
| BmgT120I | GGNCC | 4 cut(s) | 22, 119, 352, 379 |
| BmiI | GGNNCC | 8 cut(s) | 75, 121, 201, 240, 276, 353, 381, 468 |
| BmrI | ACTGGG | 1 cut(s) | 628 |
| BmsI | GCATC | 1 cut(s) | 112 |
| BmuI | ACTGGG | 1 cut(s) | 628 |
| BpmI | CTGGAG | 1 cut(s) | 117 |
| Bpu10I | CCTNAGC | 2 cut(s) | 642, 755 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 59 |
| BsaHI | GRCGYC | 1 cut(s) | 239 |
| BsaI | GGTCTC | 1 cut(s) | 335 |
| BsaJI | CCNNGG | 2 cut(s) | 78, 115 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 458, 488 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 70, 210, 284, 388, 516, 619 |
| Bse118I | RCCGGY | 1 cut(s) | 769 |
| Bse1I | ACTGG | 4 cut(s) | 134, 179, 254, 623 |
| Bse3DI | GCAATG | 1 cut(s) | 169 |
| BseDI | CCNNGG | 2 cut(s) | 78, 115 |
| BseGI | GGATG | 1 cut(s) | 328 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 70, 210, 284, 388, 516, 619 |
| BseMI | GCAATG | 1 cut(s) | 169 |
| BseMII | CTCAG | 6 cut(s) | 50, 59, 60, 462, 633, 746 |
| BseNI | ACTGG | 4 cut(s) | 134, 179, 254, 623 |
| BseSI | GKGCMC | 1 cut(s) | 204 |
| BseXI | GCAGC | 4 cut(s) | 160, 196, 262, 710 |
| BsgI | GTGCAG | 3 cut(s) | 161, 203, 437 |
| BshFI | GGCC | 6 cut(s) | 23, 120, 332, 380, 509, 769 |
| BshNI | GGYRCC | 2 cut(s) | 199, 238 |
| BsiHKAI | GWGCWC | 1 cut(s) | 294 |
| BsiSI | CCGG | 1 cut(s) | 770 |
| BslFI | GGGAC | 1 cut(s) | 533 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 70, 210, 284, 388, 516, 619 |
| BsmAI | GTCTC | 2 cut(s) | 335, 547 |
| BsmFI | GGGAC | 1 cut(s) | 533 |
| BsnI | GGCC | 6 cut(s) | 23, 120, 332, 380, 509, 769 |
| Bso31I | GGTCTC | 1 cut(s) | 335 |
| Bsp1286I | GDGCHC | 2 cut(s) | 204, 294 |
| Bsp143I | GATC | 2 cut(s) | 577, 609 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 59 |
| BspANI | GGCC | 6 cut(s) | 23, 120, 332, 380, 509, 769 |
| BspCNI | CTCAG | 6 cut(s) | 51, 58, 61, 463, 634, 747 |
| BspLI | GGNNCC | 8 cut(s) | 75, 121, 201, 240, 276, 353, 381, 468 |
| BspPI | GGATC | 2 cut(s) | 585, 604 |
| BspT107I | GGYRCC | 2 cut(s) | 199, 238 |
| BspTNI | GGTCTC | 1 cut(s) | 335 |
| BsrBI | CCGCTC | 3 cut(s) | 502, 529, 683 |
| BsrDI | GCAATG | 1 cut(s) | 169 |
| BsrFI | RCCGGY | 1 cut(s) | 769 |
| BsrI | ACTGG | 4 cut(s) | 134, 179, 254, 623 |
| BssAI | RCCGGY | 1 cut(s) | 769 |
| BssECI | CCNNGG | 2 cut(s) | 78, 115 |
| BssMI | GATC | 2 cut(s) | 577, 609 |
| BssNI | GRCGYC | 1 cut(s) | 239 |
| Bst4CI | ACNGT | 2 cut(s) | 397, 712 |
| Bst6I | CTCTTC | 1 cut(s) | 644 |
| BstACI | GRCGYC | 1 cut(s) | 239 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 704 |
| BstC8I | GCNNGC | 5 cut(s) | 144, 359, 378, 500, 507 |
| BstDEI | CTNAG | 7 cut(s) | 45, 59, 69, 471, 633, 642, 755 |
| BstDSI | CCRYGG | 1 cut(s) | 78 |
| BstF5I | GGATG | 1 cut(s) | 328 |
| BstH2I | RGCGCY | 2 cut(s) | 59, 242 |
| BstHHI | GCGC | 3 cut(s) | 58, 178, 241 |
| BstKTI | GATC | 2 cut(s) | 580, 612 |
| BstMAI | GTCTC | 2 cut(s) | 335, 547 |
| BstMBI | GATC | 2 cut(s) | 577, 609 |
| BstSLI | GKGCMC | 1 cut(s) | 204 |
| BstV1I | GCAGC | 4 cut(s) | 160, 196, 262, 710 |
| BstX2I | RGATCY | 1 cut(s) | 609 |
| BstYI | RGATCY | 1 cut(s) | 609 |
| BsuRI | GGCC | 6 cut(s) | 23, 120, 332, 380, 509, 769 |
| BtgI | CCRYGG | 1 cut(s) | 78 |
| BtsCI | GGATG | 1 cut(s) | 328 |
| BtsIMutI | CAGTG | 4 cut(s) | 141, 186, 616, 708 |
| Cac8I | GCNNGC | 5 cut(s) | 144, 359, 378, 500, 507 |
| CaiI | CAGNNNCTG | 1 cut(s) | 704 |
| CfoI | GCGC | 3 cut(s) | 58, 178, 241 |
| Cfr10I | RCCGGY | 1 cut(s) | 769 |
| Cfr13I | GGNCC | 4 cut(s) | 22, 119, 352, 379 |
| CseI | GACGC | 1 cut(s) | 690 |
| CviAII | CATG | 3 cut(s) | 516, 539, 568 |
| DdeI | CTNAG | 7 cut(s) | 45, 59, 69, 471, 633, 642, 755 |
| DinI | GGCGCC | 1 cut(s) | 240 |
| DpnI | GATC | 2 cut(s) | 579, 611 |
| DpnII | GATC | 2 cut(s) | 577, 609 |
| EaeI | YGGCCR | 1 cut(s) | 507 |
| Eam1104I | CTCTTC | 1 cut(s) | 644 |
| EarI | CTCTTC | 1 cut(s) | 644 |
| EciI | GGCGGA | 1 cut(s) | 344 |
| Eco31I | GGTCTC | 1 cut(s) | 335 |
| Eco47I | GGWCC | 1 cut(s) | 352 |
| Eco57I | CTGAAG | 1 cut(s) | 593 |
| EcoO109I | RGGNCCY | 1 cut(s) | 379 |
| EcoRI | GAATTC | 1 cut(s) | 455 |
| EgeI | GGCGCC | 1 cut(s) | 240 |
| EheI | GGCGCC | 1 cut(s) | 240 |
| FaeI | CATG | 3 cut(s) | 519, 542, 571 |
| FaiI | YATR | 9 cut(s) | 6, 338, 448, 450, 517, 540, 563, 569, 741 |
| FaqI | GGGAC | 1 cut(s) | 533 |
| FatI | CATG | 3 cut(s) | 515, 538, 567 |
| FauI | CCCGC | 1 cut(s) | 139 |
| FblI | GTMKAC | 2 cut(s) | 39, 731 |
| FokI | GGATG | 1 cut(s) | 335 |
| FspBI | CTAG | 3 cut(s) | 17, 546, 551 |
| GlaI | GCGC | 3 cut(s) | 57, 177, 240 |
| GsuI | CTGGAG | 1 cut(s) | 117 |
| HaeII | RGCGCY | 2 cut(s) | 59, 242 |
| HaeIII | GGCC | 6 cut(s) | 23, 120, 332, 380, 509, 769 |
| HapII | CCGG | 1 cut(s) | 770 |
| HgaI | GACGC | 1 cut(s) | 690 |
| HhaI | GCGC | 3 cut(s) | 58, 178, 241 |
| Hin1I | GRCGYC | 1 cut(s) | 239 |
| Hin1II | CATG | 3 cut(s) | 519, 542, 571 |
| Hin6I | GCGC | 3 cut(s) | 56, 176, 239 |
| HinP1I | GCGC | 3 cut(s) | 56, 176, 239 |
| HincII | GTYRAC | 2 cut(s) | 40, 732 |
| HindII | GTYRAC | 2 cut(s) | 40, 732 |
| HinfI | GANTC | 4 cut(s) | 434, 623, 691, 796 |
| HpaII | CCGG | 1 cut(s) | 770 |
| HphI | GGTGA | 2 cut(s) | 658, 674 |
| Hpy166II | GTNNAC | 2 cut(s) | 40, 732 |
| Hpy188I | TCNGA | 4 cut(s) | 48, 70, 312, 412 |
| Hpy8I | GTNNAC | 2 cut(s) | 40, 732 |
| Hpy99I | CGWCG | 2 cut(s) | 128, 736 |
| HpyAV | CCTTC | 5 cut(s) | 220, 361, 382, 568, 623 |
| HpyCH4III | ACNGT | 2 cut(s) | 397, 712 |
| HpyCH4IV | ACGT | 2 cut(s) | 522, 785 |
| HpyCH4V | TGCA | 5 cut(s) | 142, 184, 223, 418, 515 |
| HpyF3I | CTNAG | 7 cut(s) | 45, 59, 69, 471, 633, 642, 755 |
| HpySE526I | ACGT | 2 cut(s) | 522, 785 |
| Hsp92I | GRCGYC | 1 cut(s) | 239 |
| Hsp92II | CATG | 3 cut(s) | 519, 542, 571 |
| HspAI | GCGC | 3 cut(s) | 56, 176, 239 |
| KasI | GGCGCC | 1 cut(s) | 238 |
| Kzo9I | GATC | 2 cut(s) | 577, 609 |
| LmnI | GCTCC | 5 cut(s) | 149, 274, 297, 466, 680 |
| Lsp1109I | GCAGC | 4 cut(s) | 160, 196, 262, 710 |
| LweI | GCATC | 1 cut(s) | 112 |
| MaeI | CTAG | 3 cut(s) | 17, 546, 551 |
| MaeII | ACGT | 2 cut(s) | 522, 785 |
| MaeIII | GTNAC | 2 cut(s) | 256, 425 |
| MalI | GATC | 2 cut(s) | 579, 611 |
| MbiI | CCGCTC | 3 cut(s) | 502, 529, 683 |
| MboI | GATC | 2 cut(s) | 577, 609 |
| MboII | GAAGA | 3 cut(s) | 376, 478, 661 |
| MflI | RGATCY | 1 cut(s) | 609 |
| MhlI | GDGCHC | 2 cut(s) | 204, 294 |
| MluCI | AATT | 1 cut(s) | 455 |
| Mly113I | GGCGCC | 1 cut(s) | 239 |
| MlyI | GAGTC | 2 cut(s) | 428, 790 |
| MmeI | TCCRAC | 2 cut(s) | 390, 636 |
| MseI | TTAA | 1 cut(s) | 723 |
| MslI | CAYNNNNRTG | 2 cut(s) | 263, 566 |
| MspA1I | CMGCKG | 1 cut(s) | 361 |
| MspI | CCGG | 1 cut(s) | 770 |
| NarI | GGCGCC | 1 cut(s) | 239 |
| NdeII | GATC | 2 cut(s) | 577, 609 |
| NlaIII | CATG | 3 cut(s) | 519, 542, 571 |
| NlaIV | GGNNCC | 8 cut(s) | 75, 121, 201, 240, 276, 353, 381, 468 |
| NmeAIII | GCCGAG | 1 cut(s) | 96 |
| NmuCI | GTSAC | 1 cut(s) | 256 |
| OliI | CACNNNNGTG | 1 cut(s) | 263 |
| PfeI | GAWTC | 2 cut(s) | 623, 691 |
| PflFI | GACNNNGTC | 1 cut(s) | 539 |
| PleI | GAGTC | 2 cut(s) | 428, 790 |
| PluTI | GGCGCC | 1 cut(s) | 242 |
| PpsI | GAGTC | 2 cut(s) | 428, 790 |
| PspN4I | GGNNCC | 8 cut(s) | 75, 121, 201, 240, 276, 353, 381, 468 |
| PspPI | GGNCC | 4 cut(s) | 22, 119, 352, 379 |
| PstNI | CAGNNNCTG | 1 cut(s) | 704 |
| PsuI | RGATCY | 1 cut(s) | 609 |
| PsyI | GACNNNGTC | 1 cut(s) | 539 |
| RseI | CAYNNNNRTG | 2 cut(s) | 263, 566 |
| SalI | GTCGAC | 2 cut(s) | 38, 730 |
| SaqAI | TTAA | 1 cut(s) | 723 |
| Sau3AI | GATC | 2 cut(s) | 577, 609 |
| Sau96I | GGNCC | 4 cut(s) | 22, 119, 352, 379 |
| SchI | GAGTC | 2 cut(s) | 428, 790 |
| SduI | GDGCHC | 2 cut(s) | 204, 294 |
| SfaNI | GCATC | 1 cut(s) | 112 |
| SfoI | GGCGCC | 1 cut(s) | 240 |
| SinI | GGWCC | 1 cut(s) | 352 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 263, 566 |
| Sse9I | AATT | 1 cut(s) | 455 |
| SspDI | GGCGCC | 1 cut(s) | 238 |
| SspMI | CTAG | 3 cut(s) | 17, 546, 551 |
| TaaI | ACNGT | 2 cut(s) | 397, 712 |
| TaiI | ACGT | 2 cut(s) | 525, 788 |
| TaqI | TCGA | 5 cut(s) | 39, 386, 432, 694, 731 |
| TasI | AATT | 1 cut(s) | 455 |
| TauI | GCSGC | 7 cut(s) | 103, 280, 302, 505, 590, 632, 763 |
| TfiI | GAWTC | 2 cut(s) | 623, 691 |
| Tru1I | TTAA | 1 cut(s) | 723 |
| Tru9I | TTAA | 1 cut(s) | 723 |
| TscAI | CASTG | 4 cut(s) | 141, 186, 623, 715 |
| TseFI | GTSAC | 1 cut(s) | 256 |
| TseI | GCWGC | 4 cut(s) | 173, 184, 250, 698 |
| Tsp45I | GTSAC | 1 cut(s) | 256 |
| TspDTI | ATGAA | 1 cut(s) | 756 |
| TspGWI | ACGGA | 1 cut(s) | 749 |
| TspRI | CASTG | 4 cut(s) | 141, 186, 623, 715 |
| Tth111I | GACNNNGTC | 1 cut(s) | 539 |
| VpaK11BI | GGWCC | 1 cut(s) | 352 |
| XapI | RAATTY | 1 cut(s) | 455 |
| XmiI | GTMKAC | 2 cut(s) | 39, 731 |
| XspI | CTAG | 3 cut(s) | 17, 546, 551 |