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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 464 |
| AccB1I | GGYRCC | 1 cut(s) | 464 |
| AccBSI | CCGCTC | 1 cut(s) | 73 |
| AclWI | GGATC | 2 cut(s) | 129, 148 |
| AcoI | YGGCCR | 2 cut(s) | 324, 441 |
| AcuI | CTGAAG | 3 cut(s) | 137, 143, 362 |
| AfaI | GTAC | 1 cut(s) | 466 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 60, 118, 453, 454, 542 |
| AgsI | TTSAA | 1 cut(s) | 268 |
| AjiI | CACGTC | 2 cut(s) | 67, 85 |
| AjnI | CCWGG | 2 cut(s) | 430, 452 |
| AleI | CACNNNNGTG | 1 cut(s) | 455 |
| AluBI | AGCT | 3 cut(s) | 43, 295, 337 |
| AluI | AGCT | 3 cut(s) | 43, 295, 337 |
| Alw26I | GTCTC | 3 cut(s) | 91, 427, 542 |
| AlwI | GGATC | 2 cut(s) | 129, 148 |
| AoxI | GGCC | 2 cut(s) | 324, 441 |
| ApeKI | GCWGC | 2 cut(s) | 185, 337 |
| Asp718I | GGTACC | 1 cut(s) | 464 |
| AsuHPI | GGTGA | 3 cut(s) | 43, 151, 202 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 456, 489 |
| BalI | TGGCCA | 1 cut(s) | 326 |
| BanI | GGYRCC | 1 cut(s) | 464 |
| BauI | CACGAG | 1 cut(s) | 492 |
| BbsI | GAAGAC | 1 cut(s) | 390 |
| BbvI | GCAGC | 2 cut(s) | 172, 324 |
| BccI | CCATC | 1 cut(s) | 455 |
| BceAI | ACGGC | 2 cut(s) | 52, 498 |
| BciT130I | CCWGG | 2 cut(s) | 432, 454 |
| BcoDI | GTCTC | 3 cut(s) | 91, 427, 542 |
| BfaI | CTAG | 1 cut(s) | 480 |
| BfmI | CTRYAG | 1 cut(s) | 171 |
| BisI | GCNGC | 8 cut(s) | 24, 186, 243, 252, 306, 338, 444, 536 |
| BlsI | GCNGC | 8 cut(s) | 25, 187, 244, 253, 307, 339, 445, 537 |
| Bme1390I | CCNGG | 2 cut(s) | 432, 454 |
| BmgBI | CACGTC | 2 cut(s) | 67, 85 |
| BmiI | GGNNCC | 1 cut(s) | 466 |
| BmrFI | CCNGG | 2 cut(s) | 432, 454 |
| BmrI | ACTGGG | 1 cut(s) | 230 |
| BmsI | GCATC | 2 cut(s) | 19, 550 |
| BmuI | ACTGGG | 1 cut(s) | 230 |
| BpiI | GAAGAC | 1 cut(s) | 390 |
| BpmI | CTGGAG | 3 cut(s) | 73, 116, 221 |
| BsaI | GGTCTC | 1 cut(s) | 427 |
| BsaJI | CCNNGG | 3 cut(s) | 34, 417, 453 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 71, 101 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 60, 118, 453, 454, 542 |
| Bse1I | ACTGG | 2 cut(s) | 99, 225 |
| BseBI | CCWGG | 2 cut(s) | 432, 454 |
| BseDI | CCNNGG | 3 cut(s) | 34, 417, 453 |
| BseGI | GGATG | 2 cut(s) | 211, 466 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 60, 118, 453, 454, 542 |
| BseMII | CTCAG | 3 cut(s) | 291, 404, 425 |
| BseNI | ACTGG | 2 cut(s) | 99, 225 |
| BseRI | GAGGAG | 1 cut(s) | 242 |
| BseXI | GCAGC | 2 cut(s) | 172, 324 |
| BshFI | GGCC | 2 cut(s) | 326, 443 |
| BshNI | GGYRCC | 1 cut(s) | 464 |
| BsiSI | CCGG | 1 cut(s) | 377 |
| BslFI | GGGAC | 1 cut(s) | 77 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 60, 118, 453, 454, 542 |
| BsmAI | GTCTC | 3 cut(s) | 91, 427, 542 |
| BsmBI | CGTCTC | 1 cut(s) | 91 |
| BsmFI | GGGAC | 1 cut(s) | 77 |
| BsnI | GGCC | 2 cut(s) | 326, 443 |
| Bso31I | GGTCTC | 1 cut(s) | 427 |
| Bsp143I | GATC | 3 cut(s) | 121, 153, 502 |
| BspANI | GGCC | 2 cut(s) | 326, 443 |
| BspCNI | CTCAG | 3 cut(s) | 292, 403, 424 |
| BspLI | GGNNCC | 1 cut(s) | 466 |
| BspMAI | CTGCAG | 1 cut(s) | 175 |
| BspPI | GGATC | 2 cut(s) | 129, 148 |
| BspT107I | GGYRCC | 1 cut(s) | 464 |
| BspTNI | GGTCTC | 1 cut(s) | 427 |
| BsrBI | CCGCTC | 1 cut(s) | 73 |
| BsrI | ACTGG | 2 cut(s) | 99, 225 |
| BssECI | CCNNGG | 3 cut(s) | 34, 417, 453 |
| BssMI | GATC | 3 cut(s) | 121, 153, 502 |
| BssSI | CACGAG | 1 cut(s) | 492 |
| Bst2BI | CACGAG | 1 cut(s) | 492 |
| Bst2UI | CCWGG | 2 cut(s) | 432, 454 |
| Bst4CI | ACNGT | 2 cut(s) | 55, 553 |
| Bst6I | CTCTTC | 1 cut(s) | 188 |
| BstC8I | GCNNGC | 1 cut(s) | 41 |
| BstDEI | CTNAG | 3 cut(s) | 300, 390, 411 |
| BstDSI | CCRYGG | 1 cut(s) | 34 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 116 |
| BstF5I | GGATG | 2 cut(s) | 211, 466 |
| BstKTI | GATC | 3 cut(s) | 124, 156, 505 |
| BstMAI | GTCTC | 3 cut(s) | 91, 427, 542 |
| BstMBI | GATC | 3 cut(s) | 121, 153, 502 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 29, 248, 251, 260, 311, 343, 400, 532 |
| BstNI | CCWGG | 2 cut(s) | 432, 454 |
| BstSCI | CCNGG | 2 cut(s) | 430, 452 |
| BstSFI | CTRYAG | 1 cut(s) | 171 |
| BstV1I | GCAGC | 2 cut(s) | 172, 324 |
| BstV2I | GAAGAC | 1 cut(s) | 390 |
| BstX2I | RGATCY | 1 cut(s) | 153 |
| BstYI | RGATCY | 1 cut(s) | 153 |
| BsuRI | GGCC | 2 cut(s) | 326, 443 |
| BtgI | CCRYGG | 1 cut(s) | 34 |
| BtrI | CACGTC | 2 cut(s) | 67, 85 |
| BtsCI | GGATG | 2 cut(s) | 211, 466 |
| BtsI | GCAGTG | 1 cut(s) | 180 |
| BtsIMutI | CAGTG | 1 cut(s) | 180 |
| Cac8I | GCNNGC | 1 cut(s) | 41 |
| CseI | GACGC | 1 cut(s) | 362 |
| Csp6I | GTAC | 1 cut(s) | 465 |
| CviQI | GTAC | 1 cut(s) | 465 |
| DdeI | CTNAG | 3 cut(s) | 300, 390, 411 |
| DpnI | GATC | 3 cut(s) | 123, 155, 504 |
| DpnII | GATC | 3 cut(s) | 121, 153, 502 |
| EaeI | YGGCCR | 2 cut(s) | 324, 441 |
| Eam1104I | CTCTTC | 1 cut(s) | 188 |
| EarI | CTCTTC | 1 cut(s) | 188 |
| EciI | GGCGGA | 2 cut(s) | 293, 395 |
| Eco31I | GGTCTC | 1 cut(s) | 427 |
| Eco57I | CTGAAG | 3 cut(s) | 137, 143, 362 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 116 |
| EcoRII | CCWGG | 2 cut(s) | 430, 452 |
| Esp3I | CGTCTC | 1 cut(s) | 91 |
| FaiI | YATR | 2 cut(s) | 285, 323 |
| FaqI | GGGAC | 1 cut(s) | 77 |
| FauI | CCCGC | 1 cut(s) | 408 |
| Fnu4HI | GCNGC | 8 cut(s) | 24, 186, 243, 252, 306, 338, 444, 536 |
| FokI | GGATG | 2 cut(s) | 218, 473 |
| Fsp4HI | GCNGC | 8 cut(s) | 24, 186, 243, 252, 306, 338, 444, 536 |
| FspBI | CTAG | 1 cut(s) | 480 |
| GluI | GCNGC | 8 cut(s) | 24, 186, 243, 252, 306, 338, 444, 536 |
| GsuI | CTGGAG | 3 cut(s) | 73, 116, 221 |
| HaeIII | GGCC | 2 cut(s) | 326, 443 |
| HapII | CCGG | 1 cut(s) | 377 |
| HgaI | GACGC | 1 cut(s) | 362 |
| HinfI | GANTC | 3 cut(s) | 167, 235, 386 |
| HpaII | CCGG | 1 cut(s) | 377 |
| HphI | GGTGA | 3 cut(s) | 43, 151, 202 |
| Hpy188I | TCNGA | 3 cut(s) | 418, 502, 523 |
| Hpy188III | TCNNGA | 1 cut(s) | 90 |
| Hpy99I | CGWCG | 1 cut(s) | 59 |
| HpyAV | CCTTC | 3 cut(s) | 112, 139, 167 |
| HpyCH4III | ACNGT | 2 cut(s) | 55, 553 |
| HpyCH4IV | ACGT | 3 cut(s) | 66, 84, 330 |
| HpyCH4V | TGCA | 1 cut(s) | 173 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 29, 248, 251, 260, 311, 343, 400, 532 |
| HpyF3I | CTNAG | 3 cut(s) | 300, 390, 411 |
| HpySE526I | ACGT | 3 cut(s) | 66, 84, 330 |
| KpnI | GGTACC | 1 cut(s) | 468 |
| Kzo9I | GATC | 3 cut(s) | 121, 153, 502 |
| LmnI | GCTCC | 3 cut(s) | 70, 97, 334 |
| Lsp1109I | GCAGC | 2 cut(s) | 172, 324 |
| LweI | GCATC | 2 cut(s) | 19, 550 |
| MaeI | CTAG | 1 cut(s) | 480 |
| MaeII | ACGT | 3 cut(s) | 66, 84, 330 |
| MaeIII | GTNAC | 2 cut(s) | 49, 211 |
| MalI | GATC | 3 cut(s) | 123, 155, 504 |
| MbiI | CCGCTC | 1 cut(s) | 73 |
| MboI | GATC | 3 cut(s) | 121, 153, 502 |
| MboII | GAAGA | 3 cut(s) | 154, 205, 395 |
| MflI | RGATCY | 1 cut(s) | 153 |
| MlsI | TGGCCA | 1 cut(s) | 326 |
| MluNI | TGGCCA | 1 cut(s) | 326 |
| MlyI | GAGTC | 1 cut(s) | 380 |
| MnlI | CCTC | 9 cut(s) | 189, 196, 202, 220, 223, 253, 295, 412, 574 |
| Mox20I | TGGCCA | 1 cut(s) | 326 |
| MscI | TGGCCA | 1 cut(s) | 326 |
| MslI | CAYNNNNRTG | 2 cut(s) | 455, 473 |
| Msp20I | TGGCCA | 1 cut(s) | 326 |
| MspA1I | CMGCKG | 2 cut(s) | 26, 254 |
| MspI | CCGG | 1 cut(s) | 377 |
| MspR9I | CCNGG | 2 cut(s) | 432, 454 |
| MvaI | CCWGG | 2 cut(s) | 432, 454 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 29, 248, 251, 260, 311, 343, 400, 532 |
| NdeII | GATC | 3 cut(s) | 121, 153, 502 |
| NlaIV | GGNNCC | 1 cut(s) | 466 |
| NmuCI | GTSAC | 1 cut(s) | 49 |
| OliI | CACNNNNGTG | 1 cut(s) | 455 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 63 |
| PfeI | GAWTC | 2 cut(s) | 167, 235 |
| PflFI | GACNNNGTC | 1 cut(s) | 83 |
| PkrI | GCNGC | 8 cut(s) | 25, 187, 244, 253, 307, 339, 445, 537 |
| PleI | GAGTC | 1 cut(s) | 380 |
| PpsI | GAGTC | 1 cut(s) | 380 |
| Psp6I | CCWGG | 2 cut(s) | 430, 452 |
| PspGI | CCWGG | 2 cut(s) | 430, 452 |
| PspN4I | GGNNCC | 1 cut(s) | 466 |
| PstI | CTGCAG | 1 cut(s) | 175 |
| PsuI | RGATCY | 1 cut(s) | 153 |
| PsyI | GACNNNGTC | 1 cut(s) | 83 |
| RsaI | GTAC | 1 cut(s) | 466 |
| RsaNI | GTAC | 1 cut(s) | 465 |
| RseI | CAYNNNNRTG | 2 cut(s) | 455, 473 |
| SatI | GCNGC | 8 cut(s) | 24, 186, 243, 252, 306, 338, 444, 536 |
| Sau3AI | GATC | 3 cut(s) | 121, 153, 502 |
| SchI | GAGTC | 1 cut(s) | 380 |
| ScrFI | CCNGG | 2 cut(s) | 432, 454 |
| SfaNI | GCATC | 2 cut(s) | 19, 550 |
| SfcI | CTRYAG | 1 cut(s) | 171 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 455, 473 |
| SspMI | CTAG | 1 cut(s) | 480 |
| StyD4I | CCNGG | 2 cut(s) | 430, 452 |
| TaaI | ACNGT | 2 cut(s) | 55, 553 |
| TaiI | ACGT | 3 cut(s) | 69, 87, 333 |
| TaqI | TCGA | 3 cut(s) | 57, 217, 509 |
| TauI | GCSGC | 6 cut(s) | 26, 245, 254, 308, 446, 538 |
| TfiI | GAWTC | 2 cut(s) | 167, 235 |
| TscAI | CASTG | 1 cut(s) | 180 |
| TseFI | GTSAC | 1 cut(s) | 49 |
| TseI | GCWGC | 2 cut(s) | 185, 337 |
| Tsp45I | GTSAC | 1 cut(s) | 49 |
| TspRI | CASTG | 1 cut(s) | 180 |
| Tth111I | GACNNNGTC | 1 cut(s) | 83 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 116 |
| XspI | CTAG | 1 cut(s) | 480 |