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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1034 |
| Acc65I | GGTACC | 1 cut(s) | 1025 |
| AccB1I | GGYRCC | 3 cut(s) | 110, 304, 1025 |
| AccBSI | CCGCTC | 2 cut(s) | 415, 706 |
| AclWI | GGATC | 6 cut(s) | 71, 166, 174, 187, 762, 1071 |
| AcoI | YGGCCR | 2 cut(s) | 786, 1002 |
| AcuI | CTGAAG | 5 cut(s) | 173, 182, 460, 770, 1140 |
| AcyI | GRCGYC | 1 cut(s) | 934 |
| AfaI | GTAC | 4 cut(s) | 41, 362, 824, 1027 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 138, 155, 388, 609, 751, 894, 1103 |
| AjiI | CACGTC | 1 cut(s) | 700 |
| AjnI | CCWGG | 1 cut(s) | 342 |
| AleI | CACNNNNGTG | 1 cut(s) | 408 |
| AluBI | AGCT | 7 cut(s) | 293, 480, 592, 676, 727, 811, 1124 |
| AluI | AGCT | 7 cut(s) | 293, 480, 592, 676, 727, 811, 1124 |
| Alw26I | GTCTC | 4 cut(s) | 77, 248, 584, 988 |
| AlwI | GGATC | 6 cut(s) | 71, 166, 174, 187, 762, 1071 |
| Ama87I | CYCGRG | 5 cut(s) | 29, 80, 419, 543, 1014 |
| AoxI | GGCC | 7 cut(s) | 57, 164, 264, 471, 600, 786, 1002 |
| ApaI | GGGCCC | 1 cut(s) | 268 |
| ApeKI | GCWGC | 3 cut(s) | 553, 656, 764 |
| Asp718I | GGTACC | 1 cut(s) | 1025 |
| AspLEI | GCGC | 4 cut(s) | 11, 450, 633, 884 |
| AspS9I | GGNCC | 3 cut(s) | 58, 264, 265 |
| AsuC2I | CCSGG | 2 cut(s) | 544, 545 |
| AsuHPI | GGTGA | 3 cut(s) | 121, 131, 859 |
| AvaI | CYCGRG | 5 cut(s) | 29, 80, 419, 543, 1014 |
| BaeGI | GKGCMC | 1 cut(s) | 268 |
| BamHI | GGATCC | 1 cut(s) | 179 |
| BanI | GGYRCC | 3 cut(s) | 110, 304, 1025 |
| BanII | GRGCYC | 1 cut(s) | 268 |
| BauI | CACGAG | 1 cut(s) | 1053 |
| BbsI | GAAGAC | 1 cut(s) | 71 |
| BbvI | GCAGC | 3 cut(s) | 565, 643, 776 |
| BccI | CCATC | 3 cut(s) | 221, 266, 1016 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1097, 1131 |
| BciT130I | CCWGG | 1 cut(s) | 344 |
| BcnI | CCSGG | 2 cut(s) | 544, 545 |
| BcoDI | GTCTC | 4 cut(s) | 77, 248, 584, 988 |
| BfaI | CTAG | 2 cut(s) | 524, 728 |
| BfmI | CTRYAG | 1 cut(s) | 657 |
| BfoI | RGCGCY | 2 cut(s) | 634, 885 |
| BlpI | GCTNAGC | 1 cut(s) | 481 |
| Bme1390I | CCNGG | 3 cut(s) | 344, 544, 545 |
| BmeT110I | CYCGRG | 5 cut(s) | 29, 80, 419, 543, 1014 |
| BmgBI | CACGTC | 1 cut(s) | 700 |
| BmgT120I | GGNCC | 3 cut(s) | 58, 264, 265 |
| BmiI | GGNNCC | 8 cut(s) | 112, 147, 181, 265, 266, 306, 904, 1027 |
| BmrFI | CCNGG | 3 cut(s) | 344, 544, 545 |
| BmsI | GCATC | 6 cut(s) | 217, 502, 539, 610, 643, 652 |
| BpiI | GAAGAC | 1 cut(s) | 71 |
| BpmI | CTGGAG | 3 cut(s) | 74, 604, 1121 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 481 |
| BpuMI | CCSGG | 2 cut(s) | 544, 545 |
| BsaHI | GRCGYC | 1 cut(s) | 934 |
| BsaI | GGTCTC | 3 cut(s) | 248, 584, 988 |
| BsaJI | CCNNGG | 5 cut(s) | 300, 542, 543, 603, 639 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 138, 155, 388, 609, 751, 894, 1103 |
| Bse118I | RCCGGY | 1 cut(s) | 116 |
| Bse1I | ACTGG | 1 cut(s) | 93 |
| Bse3DI | GCAATG | 1 cut(s) | 132 |
| BseBI | CCWGG | 1 cut(s) | 344 |
| BseDI | CCNNGG | 5 cut(s) | 300, 542, 543, 603, 639 |
| BseGI | GGATG | 4 cut(s) | 250, 625, 1083, 1117 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 138, 155, 388, 609, 751, 894, 1103 |
| BseMI | GCAATG | 1 cut(s) | 132 |
| BseMII | CTCAG | 7 cut(s) | 495, 513, 831, 924, 965, 969, 986 |
| BseNI | ACTGG | 1 cut(s) | 93 |
| BseRI | GAGGAG | 4 cut(s) | 34, 217, 248, 581 |
| BseSI | GKGCMC | 1 cut(s) | 268 |
| BseX3I | CGGCCG | 1 cut(s) | 786 |
| BseXI | GCAGC | 3 cut(s) | 565, 643, 776 |
| BseYI | CCCAGC | 2 cut(s) | 592, 861 |
| BsgI | GTGCAG | 1 cut(s) | 153 |
| Bsh1285I | CGRYCG | 1 cut(s) | 789 |
| BshFI | GGCC | 7 cut(s) | 59, 166, 266, 473, 602, 788, 1004 |
| BshNI | GGYRCC | 3 cut(s) | 110, 304, 1025 |
| BsiEI | CGRYCG | 1 cut(s) | 789 |
| BsiHKCI | CYCGRG | 5 cut(s) | 29, 80, 419, 543, 1014 |
| BsiSI | CCGG | 4 cut(s) | 117, 544, 938, 1075 |
| BsiWI | CGTACG | 1 cut(s) | 360 |
| BslFI | GGGAC | 1 cut(s) | 710 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 138, 155, 388, 609, 751, 894, 1103 |
| BsmAI | GTCTC | 4 cut(s) | 77, 248, 584, 988 |
| BsmFI | GGGAC | 1 cut(s) | 710 |
| BsmI | GAATGC | 1 cut(s) | 653 |
| BsnI | GGCC | 7 cut(s) | 59, 166, 266, 473, 602, 788, 1004 |
| Bso31I | GGTCTC | 3 cut(s) | 248, 584, 988 |
| BsoBI | CYCGRG | 5 cut(s) | 29, 80, 419, 543, 1014 |
| Bsp120I | GGGCCC | 1 cut(s) | 264 |
| Bsp1286I | GDGCHC | 1 cut(s) | 268 |
| Bsp143I | GATC | 7 cut(s) | 15, 76, 158, 179, 570, 754, 1063 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 481 |
| BspANI | GGCC | 7 cut(s) | 59, 166, 266, 473, 602, 788, 1004 |
| BspCNI | CTCAG | 7 cut(s) | 494, 512, 832, 923, 964, 970, 985 |
| BspLI | GGNNCC | 8 cut(s) | 112, 147, 181, 265, 266, 306, 904, 1027 |
| BspMAI | CTGCAG | 1 cut(s) | 661 |
| BspPI | GGATC | 6 cut(s) | 71, 166, 174, 187, 762, 1071 |
| BspT107I | GGYRCC | 3 cut(s) | 110, 304, 1025 |
| BspTNI | GGTCTC | 3 cut(s) | 248, 584, 988 |
| BsrBI | CCGCTC | 2 cut(s) | 415, 706 |
| BsrDI | GCAATG | 1 cut(s) | 132 |
| BsrFI | RCCGGY | 1 cut(s) | 116 |
| BsrI | ACTGG | 1 cut(s) | 93 |
| BssAI | RCCGGY | 1 cut(s) | 116 |
| BssECI | CCNNGG | 5 cut(s) | 300, 542, 543, 603, 639 |
| BssMI | GATC | 7 cut(s) | 15, 76, 158, 179, 570, 754, 1063 |
| BssNI | GRCGYC | 1 cut(s) | 934 |
| BssSI | CACGAG | 1 cut(s) | 1053 |
| BssT1I | CCWWGG | 3 cut(s) | 300, 603, 639 |
| Bst2BI | CACGAG | 1 cut(s) | 1053 |
| Bst2UI | CCWGG | 1 cut(s) | 344 |
| Bst4CI | ACNGT | 1 cut(s) | 127 |
| BstACI | GRCGYC | 1 cut(s) | 934 |
| BstC8I | GCNNGC | 8 cut(s) | 168, 268, 272, 333, 337, 674, 859, 994 |
| BstDEI | CTNAG | 8 cut(s) | 433, 481, 499, 840, 910, 951, 972, 978 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 749 |
| BstF5I | GGATG | 4 cut(s) | 250, 625, 1083, 1117 |
| BstH2I | RGCGCY | 2 cut(s) | 634, 885 |
| BstHHI | GCGC | 4 cut(s) | 11, 450, 633, 884 |
| BstKTI | GATC | 7 cut(s) | 18, 79, 161, 182, 573, 757, 1066 |
| BstMAI | GTCTC | 4 cut(s) | 77, 248, 584, 988 |
| BstMBI | GATC | 7 cut(s) | 15, 76, 158, 179, 570, 754, 1063 |
| BstMCI | CGRYCG | 1 cut(s) | 789 |
| BstNI | CCWGG | 1 cut(s) | 344 |
| BstNSI | RCATGY | 1 cut(s) | 40 |
| BstSCI | CCNGG | 3 cut(s) | 342, 542, 543 |
| BstSFI | CTRYAG | 1 cut(s) | 657 |
| BstSLI | GKGCMC | 1 cut(s) | 268 |
| BstV1I | GCAGC | 3 cut(s) | 565, 643, 776 |
| BstV2I | GAAGAC | 1 cut(s) | 71 |
| BstX2I | RGATCY | 1 cut(s) | 179 |
| BstYI | RGATCY | 1 cut(s) | 179 |
| BstZI | CGGCCG | 1 cut(s) | 786 |
| BsuRI | GGCC | 7 cut(s) | 59, 166, 266, 473, 602, 788, 1004 |
| BtgZI | GCGATG | 2 cut(s) | 194, 666 |
| BtrI | CACGTC | 1 cut(s) | 700 |
| BtsCI | GGATG | 4 cut(s) | 250, 625, 1083, 1117 |
| BtsIMutI | CAGTG | 3 cut(s) | 86, 92, 959 |
| Cac8I | GCNNGC | 8 cut(s) | 168, 268, 272, 333, 337, 674, 859, 994 |
| CciNI | GCGGCCGC | 1 cut(s) | 786 |
| CfoI | GCGC | 4 cut(s) | 11, 450, 633, 884 |
| Cfr10I | RCCGGY | 1 cut(s) | 116 |
| Cfr13I | GGNCC | 3 cut(s) | 58, 264, 265 |
| Cfr9I | CCCGGG | 1 cut(s) | 543 |
| CseI | GACGC | 1 cut(s) | 923 |
| Csp6I | GTAC | 4 cut(s) | 40, 361, 823, 1026 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 880, 915 |
| CviAII | CATG | 4 cut(s) | 37, 383, 989, 1137 |
| CviQI | GTAC | 4 cut(s) | 40, 361, 823, 1026 |
| DdeI | CTNAG | 8 cut(s) | 433, 481, 499, 840, 910, 951, 972, 978 |
| DpnI | GATC | 7 cut(s) | 17, 78, 160, 181, 572, 756, 1065 |
| DpnII | GATC | 7 cut(s) | 15, 76, 158, 179, 570, 754, 1063 |
| EaeI | YGGCCR | 2 cut(s) | 786, 1002 |
| EagI | CGGCCG | 1 cut(s) | 786 |
| EciI | GGCGGA | 3 cut(s) | 285, 632, 833 |
| EclXI | CGGCCG | 1 cut(s) | 786 |
| Eco130I | CCWWGG | 3 cut(s) | 300, 603, 639 |
| Eco147I | AGGCCT | 1 cut(s) | 166 |
| Eco24I | GRGCYC | 1 cut(s) | 268 |
| Eco31I | GGTCTC | 3 cut(s) | 248, 584, 988 |
| Eco52I | CGGCCG | 1 cut(s) | 786 |
| Eco57I | CTGAAG | 5 cut(s) | 173, 182, 460, 770, 1140 |
| Eco88I | CYCGRG | 5 cut(s) | 29, 80, 419, 543, 1014 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 749 |
| EcoO109I | RGGNCCY | 1 cut(s) | 264 |
| EcoRII | CCWGG | 1 cut(s) | 342 |
| EcoT14I | CCWWGG | 3 cut(s) | 300, 603, 639 |
| EcoT38I | GRGCYC | 1 cut(s) | 268 |
| ErhI | CCWWGG | 3 cut(s) | 300, 603, 639 |
| FaeI | CATG | 4 cut(s) | 40, 386, 992, 1140 |
| FaiI | YATR | 7 cut(s) | 38, 384, 740, 990, 1011, 1034, 1138 |
| FaqI | GGGAC | 1 cut(s) | 710 |
| FatI | CATG | 4 cut(s) | 36, 382, 988, 1136 |
| FauI | CCCGC | 4 cut(s) | 130, 181, 275, 687 |
| FokI | GGATG | 4 cut(s) | 257, 632, 1090, 1124 |
| FriOI | GRGCYC | 1 cut(s) | 268 |
| FspBI | CTAG | 2 cut(s) | 524, 728 |
| GlaI | GCGC | 4 cut(s) | 10, 449, 632, 883 |
| GsaI | CCCAGC | 2 cut(s) | 596, 865 |
| GsuI | CTGGAG | 3 cut(s) | 74, 604, 1121 |
| HaeII | RGCGCY | 2 cut(s) | 634, 885 |
| HaeIII | GGCC | 7 cut(s) | 59, 166, 266, 473, 602, 788, 1004 |
| HapII | CCGG | 4 cut(s) | 117, 544, 938, 1075 |
| HgaI | GACGC | 1 cut(s) | 923 |
| HhaI | GCGC | 4 cut(s) | 11, 450, 633, 884 |
| Hin1I | GRCGYC | 1 cut(s) | 934 |
| Hin1II | CATG | 4 cut(s) | 40, 386, 992, 1140 |
| Hin6I | GCGC | 4 cut(s) | 9, 448, 631, 882 |
| HinP1I | GCGC | 4 cut(s) | 9, 448, 631, 882 |
| HinfI | GANTC | 3 cut(s) | 221, 347, 958 |
| HpaII | CCGG | 4 cut(s) | 117, 544, 938, 1075 |
| HphI | GGTGA | 3 cut(s) | 121, 131, 859 |
| Hpy166II | GTNNAC | 1 cut(s) | 957 |
| Hpy188I | TCNGA | 6 cut(s) | 201, 226, 979, 1063, 1068, 1084 |
| Hpy188III | TCNNGA | 4 cut(s) | 31, 80, 373, 583 |
| Hpy8I | GTNNAC | 1 cut(s) | 957 |
| HpyAV | CCTTC | 5 cut(s) | 148, 233, 484, 745, 844 |
| HpyCH4III | ACNGT | 1 cut(s) | 127 |
| HpyCH4IV | ACGT | 3 cut(s) | 72, 699, 717 |
| HpyCH4V | TGCA | 5 cut(s) | 170, 331, 511, 659, 891 |
| HpyF3I | CTNAG | 8 cut(s) | 433, 481, 499, 840, 910, 951, 972, 978 |
| HpySE526I | ACGT | 3 cut(s) | 72, 699, 717 |
| Hsp92I | GRCGYC | 1 cut(s) | 934 |
| Hsp92II | CATG | 4 cut(s) | 40, 386, 992, 1140 |
| HspAI | GCGC | 4 cut(s) | 9, 448, 631, 882 |
| KpnI | GGTACC | 1 cut(s) | 1029 |
| Kzo9I | GATC | 7 cut(s) | 15, 76, 158, 179, 570, 754, 1063 |
| LmnI | GCTCC | 4 cut(s) | 298, 589, 703, 1129 |
| Lsp1109I | GCAGC | 3 cut(s) | 565, 643, 776 |
| LweI | GCATC | 6 cut(s) | 217, 502, 539, 610, 643, 652 |
| MaeI | CTAG | 2 cut(s) | 524, 728 |
| MaeII | ACGT | 3 cut(s) | 72, 699, 717 |
| MaeIII | GTNAC | 1 cut(s) | 127 |
| MalI | GATC | 7 cut(s) | 17, 78, 160, 181, 572, 756, 1065 |
| MbiI | CCGCTC | 2 cut(s) | 415, 706 |
| MboI | GATC | 7 cut(s) | 15, 76, 158, 179, 570, 754, 1063 |
| MboII | GAAGA | 1 cut(s) | 76 |
| MfeI | CAATTG | 1 cut(s) | 687 |
| MflI | RGATCY | 1 cut(s) | 179 |
| MhlI | GDGCHC | 1 cut(s) | 268 |
| MluCI | AATT | 1 cut(s) | 687 |
| MlyI | GAGTC | 3 cut(s) | 215, 341, 952 |
| MmeI | TCCRAC | 1 cut(s) | 1041 |
| MseI | TTAA | 3 cut(s) | 462, 561, 807 |
| MslI | CAYNNNNRTG | 1 cut(s) | 408 |
| MspA1I | CMGCKG | 4 cut(s) | 151, 176, 794, 1099 |
| MspI | CCGG | 4 cut(s) | 117, 544, 938, 1075 |
| MspR9I | CCNGG | 3 cut(s) | 344, 544, 545 |
| MunI | CAATTG | 1 cut(s) | 687 |
| Mva1269I | GAATGC | 1 cut(s) | 653 |
| MvaI | CCWGG | 1 cut(s) | 344 |
| NciI | CCSGG | 2 cut(s) | 544, 545 |
| NdeII | GATC | 7 cut(s) | 15, 76, 158, 179, 570, 754, 1063 |
| NlaIII | CATG | 4 cut(s) | 40, 386, 992, 1140 |
| NlaIV | GGNNCC | 8 cut(s) | 112, 147, 181, 265, 266, 306, 904, 1027 |
| NmeAIII | GCCGAG | 1 cut(s) | 37 |
| NmuCI | GTSAC | 1 cut(s) | 127 |
| NotI | GCGGCCGC | 1 cut(s) | 786 |
| NspI | RCATGY | 1 cut(s) | 40 |
| OliI | CACNNNNGTG | 1 cut(s) | 408 |
| PaeR7I | CTCGAG | 1 cut(s) | 29 |
| PceI | AGGCCT | 1 cut(s) | 166 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 78, 356 |
| PctI | GAATGC | 1 cut(s) | 653 |
| Pfl23II | CGTACG | 1 cut(s) | 360 |
| PleI | GAGTC | 3 cut(s) | 215, 341, 952 |
| PpsI | GAGTC | 3 cut(s) | 215, 341, 952 |
| PsiI | TTATAA | 1 cut(s) | 1034 |
| Psp6I | CCWGG | 1 cut(s) | 342 |
| PspFI | CCCAGC | 2 cut(s) | 592, 861 |
| PspGI | CCWGG | 1 cut(s) | 342 |
| PspLI | CGTACG | 1 cut(s) | 360 |
| PspN4I | GGNNCC | 8 cut(s) | 112, 147, 181, 265, 266, 306, 904, 1027 |
| PspOMI | GGGCCC | 1 cut(s) | 264 |
| PspPI | GGNCC | 3 cut(s) | 58, 264, 265 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 353, 385 |
| PstI | CTGCAG | 1 cut(s) | 661 |
| PsuI | RGATCY | 1 cut(s) | 179 |
| RsaI | GTAC | 4 cut(s) | 41, 362, 824, 1027 |
| RsaNI | GTAC | 4 cut(s) | 40, 361, 823, 1026 |
| RseI | CAYNNNNRTG | 1 cut(s) | 408 |
| SaqAI | TTAA | 3 cut(s) | 462, 561, 807 |
| Sau3AI | GATC | 7 cut(s) | 15, 76, 158, 179, 570, 754, 1063 |
| Sau96I | GGNCC | 3 cut(s) | 58, 264, 265 |
| SchI | GAGTC | 3 cut(s) | 215, 341, 952 |
| ScrFI | CCNGG | 3 cut(s) | 344, 544, 545 |
| SduI | GDGCHC | 1 cut(s) | 268 |
| SfaNI | GCATC | 6 cut(s) | 217, 502, 539, 610, 643, 652 |
| SfcI | CTRYAG | 1 cut(s) | 657 |
| Sfr274I | CTCGAG | 1 cut(s) | 29 |
| SgrAI | CRCCGGYG | 1 cut(s) | 116 |
| SlaI | CTCGAG | 1 cut(s) | 29 |
| SmaI | CCCGGG | 1 cut(s) | 545 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 408 |
| SmlI | CTYRAG | 1 cut(s) | 29 |
| SmoI | CTYRAG | 1 cut(s) | 29 |
| Sse9I | AATT | 1 cut(s) | 687 |
| SseBI | AGGCCT | 1 cut(s) | 166 |
| SspMI | CTAG | 2 cut(s) | 524, 728 |
| StuI | AGGCCT | 1 cut(s) | 166 |
| StyD4I | CCNGG | 3 cut(s) | 342, 542, 543 |
| StyI | CCWWGG | 3 cut(s) | 300, 603, 639 |
| TaaI | ACNGT | 1 cut(s) | 127 |
| TaiI | ACGT | 3 cut(s) | 75, 702, 720 |
| TaqI | TCGA | 4 cut(s) | 30, 161, 452, 533 |
| TaqII | GACCGA | 1 cut(s) | 392 |
| TasI | AATT | 1 cut(s) | 687 |
| TatI | WGTACW | 2 cut(s) | 39, 822 |
| TauI | GCSGC | 8 cut(s) | 116, 418, 432, 530, 788, 791, 794, 1007 |
| Tru1I | TTAA | 3 cut(s) | 462, 561, 807 |
| Tru9I | TTAA | 3 cut(s) | 462, 561, 807 |
| TscAI | CASTG | 3 cut(s) | 93, 99, 959 |
| TseFI | GTSAC | 1 cut(s) | 127 |
| TseI | GCWGC | 3 cut(s) | 553, 656, 764 |
| Tsp45I | GTSAC | 1 cut(s) | 127 |
| TspGWI | ACGGA | 1 cut(s) | 266 |
| TspMI | CCCGGG | 1 cut(s) | 543 |
| TspRI | CASTG | 3 cut(s) | 93, 99, 959 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 749 |
| XceI | RCATGY | 1 cut(s) | 40 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 139, 307, 610 |
| XhoI | CTCGAG | 1 cut(s) | 29 |
| XmaI | CCCGGG | 1 cut(s) | 543 |
| XspI | CTAG | 2 cut(s) | 524, 728 |