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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 361 |
| AccBSI | CCGCTC | 1 cut(s) | 359 |
| AccII | CGCG | 2 cut(s) | 49, 316 |
| AclI | AACGTT | 1 cut(s) | 346 |
| AclWI | GGATC | 2 cut(s) | 427, 446 |
| AcoI | YGGCCR | 2 cut(s) | 427, 544 |
| AcuI | CTGAAG | 1 cut(s) | 441 |
| AcyI | GRCGYC | 1 cut(s) | 328 |
| AfaI | GTAC | 2 cut(s) | 116, 582 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 9, 251, 358, 415, 416, 461 |
| AflIII | ACRYGT | 1 cut(s) | 403 |
| AjnI | CCWGG | 2 cut(s) | 208, 364 |
| AluBI | AGCT | 3 cut(s) | 121, 224, 341 |
| AluI | AGCT | 3 cut(s) | 121, 224, 341 |
| Alw21I | GWGCWC | 1 cut(s) | 226 |
| AlwI | GGATC | 2 cut(s) | 427, 446 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 209 |
| Ama87I | CYCGRG | 2 cut(s) | 8, 81 |
| AoxI | GGCC | 6 cut(s) | 43, 242, 265, 307, 427, 544 |
| ApaI | GGGCCC | 1 cut(s) | 47 |
| ApeKI | GCWGC | 3 cut(s) | 75, 121, 540 |
| AspLEI | GCGC | 1 cut(s) | 80 |
| AspS9I | GGNCC | 4 cut(s) | 43, 44, 242, 266 |
| AsuHPI | GGTGA | 3 cut(s) | 113, 163, 516 |
| AvaI | CYCGRG | 2 cut(s) | 8, 81 |
| BaeGI | GKGCMC | 1 cut(s) | 47 |
| BanI | GGYRCC | 1 cut(s) | 361 |
| BanII | GRGCYC | 2 cut(s) | 47, 226 |
| Bbv12I | GWGCWC | 1 cut(s) | 226 |
| BbvCI | CCTCAGC | 1 cut(s) | 526 |
| BbvI | GCAGC | 3 cut(s) | 62, 108, 527 |
| BciT130I | CCWGG | 2 cut(s) | 210, 366 |
| BfaI | CTAG | 1 cut(s) | 498 |
| BfmI | CTRYAG | 1 cut(s) | 246 |
| Bme1390I | CCNGG | 2 cut(s) | 210, 366 |
| BmeT110I | CYCGRG | 2 cut(s) | 8, 81 |
| BmgT120I | GGNCC | 4 cut(s) | 43, 44, 242, 266 |
| BmiI | GGNNCC | 4 cut(s) | 44, 45, 88, 363 |
| BmrFI | CCNGG | 2 cut(s) | 210, 366 |
| BmrI | ACTGGG | 1 cut(s) | 49 |
| BmuI | ACTGGG | 1 cut(s) | 49 |
| BpmI | CTGGAG | 1 cut(s) | 387 |
| Bpu10I | CCTNAGC | 2 cut(s) | 225, 526 |
| BsaHI | GRCGYC | 1 cut(s) | 328 |
| BsaJI | CCNNGG | 4 cut(s) | 82, 208, 332, 433 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 9, 251, 358, 415, 416, 461 |
| Bse1I | ACTGG | 1 cut(s) | 44 |
| BseBI | CCWGG | 2 cut(s) | 210, 366 |
| BseDI | CCNNGG | 4 cut(s) | 82, 208, 332, 433 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 9, 251, 358, 415, 416, 461 |
| BseMII | CTCAG | 3 cut(s) | 239, 475, 517 |
| BseNI | ACTGG | 1 cut(s) | 44 |
| BseSI | GKGCMC | 1 cut(s) | 47 |
| BseX3I | CGGCCG | 1 cut(s) | 544 |
| BseXI | GCAGC | 3 cut(s) | 62, 108, 527 |
| BseYI | CCCAGC | 1 cut(s) | 186 |
| Bsh1236I | CGCG | 2 cut(s) | 49, 316 |
| Bsh1285I | CGRYCG | 2 cut(s) | 314, 547 |
| BshFI | GGCC | 6 cut(s) | 45, 244, 267, 309, 429, 546 |
| BshNI | GGYRCC | 1 cut(s) | 361 |
| BsiEI | CGRYCG | 2 cut(s) | 314, 547 |
| BsiHKAI | GWGCWC | 1 cut(s) | 226 |
| BsiHKCI | CYCGRG | 2 cut(s) | 8, 81 |
| BslFI | GGGAC | 2 cut(s) | 267, 392 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 9, 251, 358, 415, 416, 461 |
| BsmFI | GGGAC | 2 cut(s) | 267, 392 |
| BsnI | GGCC | 6 cut(s) | 45, 244, 267, 309, 429, 546 |
| BsoBI | CYCGRG | 2 cut(s) | 8, 81 |
| Bsp120I | GGGCCC | 1 cut(s) | 43 |
| Bsp1286I | GDGCHC | 2 cut(s) | 47, 226 |
| Bsp143I | GATC | 4 cut(s) | 311, 419, 451, 487 |
| Bsp68I | TCGCGA | 1 cut(s) | 316 |
| BspANI | GGCC | 6 cut(s) | 45, 244, 267, 309, 429, 546 |
| BspCNI | CTCAG | 3 cut(s) | 238, 476, 518 |
| BspFNI | CGCG | 2 cut(s) | 49, 316 |
| BspLI | GGNNCC | 4 cut(s) | 44, 45, 88, 363 |
| BspPI | GGATC | 2 cut(s) | 427, 446 |
| BspT107I | GGYRCC | 1 cut(s) | 361 |
| BsrBI | CCGCTC | 1 cut(s) | 359 |
| BsrI | ACTGG | 1 cut(s) | 44 |
| BssECI | CCNNGG | 4 cut(s) | 82, 208, 332, 433 |
| BssMI | GATC | 4 cut(s) | 311, 419, 451, 487 |
| BssNI | GRCGYC | 1 cut(s) | 328 |
| BssT1I | CCWWGG | 1 cut(s) | 433 |
| Bst2UI | CCWGG | 2 cut(s) | 210, 366 |
| Bst4CI | ACNGT | 3 cut(s) | 110, 165, 382 |
| Bst6I | CTCTTC | 1 cut(s) | 13 |
| BstACI | GRCGYC | 1 cut(s) | 328 |
| BstC8I | GCNNGC | 6 cut(s) | 47, 51, 73, 242, 339, 515 |
| BstDEI | CTNAG | 4 cut(s) | 225, 257, 484, 526 |
| BstDSI | CCRYGG | 1 cut(s) | 332 |
| BstFNI | CGCG | 2 cut(s) | 49, 316 |
| BstHHI | GCGC | 1 cut(s) | 80 |
| BstKTI | GATC | 4 cut(s) | 314, 422, 454, 490 |
| BstMBI | GATC | 4 cut(s) | 311, 419, 451, 487 |
| BstMCI | CGRYCG | 2 cut(s) | 314, 547 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 77, 84, 546, 549 |
| BstNI | CCWGG | 2 cut(s) | 210, 366 |
| BstNSI | RCATGY | 1 cut(s) | 407 |
| BstSCI | CCNGG | 2 cut(s) | 208, 364 |
| BstSFI | CTRYAG | 1 cut(s) | 246 |
| BstSLI | GKGCMC | 1 cut(s) | 47 |
| BstUI | CGCG | 2 cut(s) | 49, 316 |
| BstV1I | GCAGC | 3 cut(s) | 62, 108, 527 |
| BstX2I | RGATCY | 1 cut(s) | 451 |
| BstYI | RGATCY | 1 cut(s) | 451 |
| BstZI | CGGCCG | 1 cut(s) | 544 |
| BsuRI | GGCC | 6 cut(s) | 45, 244, 267, 309, 429, 546 |
| BtgI | CCRYGG | 1 cut(s) | 332 |
| BtgZI | GCGATG | 1 cut(s) | 331 |
| BtsI | GCAGTG | 1 cut(s) | 542 |
| BtsIMutI | CAGTG | 1 cut(s) | 542 |
| BtuMI | TCGCGA | 1 cut(s) | 316 |
| Cac8I | GCNNGC | 6 cut(s) | 47, 51, 73, 242, 339, 515 |
| CaiI | CAGNNNCTG | 1 cut(s) | 209 |
| CciNI | GCGGCCGC | 1 cut(s) | 544 |
| CfoI | GCGC | 1 cut(s) | 80 |
| Cfr13I | GGNCC | 4 cut(s) | 43, 44, 242, 266 |
| CseI | GACGC | 2 cut(s) | 304, 336 |
| Csp6I | GTAC | 2 cut(s) | 115, 581 |
| CviAII | CATG | 1 cut(s) | 404 |
| CviQI | GTAC | 2 cut(s) | 115, 581 |
| DdeI | CTNAG | 4 cut(s) | 225, 257, 484, 526 |
| DpnI | GATC | 4 cut(s) | 313, 421, 453, 489 |
| DpnII | GATC | 4 cut(s) | 311, 419, 451, 487 |
| EaeI | YGGCCR | 2 cut(s) | 427, 544 |
| EagI | CGGCCG | 1 cut(s) | 544 |
| Eam1104I | CTCTTC | 1 cut(s) | 13 |
| EarI | CTCTTC | 1 cut(s) | 13 |
| EciI | GGCGGA | 1 cut(s) | 591 |
| Ecl136II | GAGCTC | 1 cut(s) | 224 |
| EclXI | CGGCCG | 1 cut(s) | 544 |
| Eco130I | CCWWGG | 1 cut(s) | 433 |
| Eco24I | GRGCYC | 2 cut(s) | 47, 226 |
| Eco52I | CGGCCG | 1 cut(s) | 544 |
| Eco53kI | GAGCTC | 1 cut(s) | 224 |
| Eco57I | CTGAAG | 1 cut(s) | 441 |
| Eco88I | CYCGRG | 2 cut(s) | 8, 81 |
| EcoICRI | GAGCTC | 1 cut(s) | 224 |
| EcoO109I | RGGNCCY | 1 cut(s) | 43 |
| EcoRII | CCWGG | 2 cut(s) | 208, 364 |
| EcoT14I | CCWWGG | 1 cut(s) | 433 |
| EcoT38I | GRGCYC | 2 cut(s) | 47, 226 |
| ErhI | CCWWGG | 1 cut(s) | 433 |
| FaeI | CATG | 1 cut(s) | 407 |
| FaiI | YATR | 2 cut(s) | 405, 563 |
| FaqI | GGGAC | 2 cut(s) | 267, 392 |
| FatI | CATG | 1 cut(s) | 403 |
| FauI | CCCGC | 5 cut(s) | 54, 98, 233, 409, 454 |
| FriOI | GRGCYC | 2 cut(s) | 47, 226 |
| FspBI | CTAG | 1 cut(s) | 498 |
| GlaI | GCGC | 1 cut(s) | 79 |
| GsaI | CCCAGC | 1 cut(s) | 190 |
| GsuI | CTGGAG | 1 cut(s) | 387 |
| HaeIII | GGCC | 6 cut(s) | 45, 244, 267, 309, 429, 546 |
| HgaI | GACGC | 2 cut(s) | 304, 336 |
| HhaI | GCGC | 1 cut(s) | 80 |
| Hin1I | GRCGYC | 1 cut(s) | 328 |
| Hin1II | CATG | 1 cut(s) | 407 |
| Hin6I | GCGC | 1 cut(s) | 78 |
| HinP1I | GCGC | 1 cut(s) | 78 |
| HincII | GTYRAC | 1 cut(s) | 385 |
| HindII | GTYRAC | 1 cut(s) | 385 |
| HinfI | GANTC | 4 cut(s) | 6, 129, 465, 558 |
| HpaI | GTTAAC | 1 cut(s) | 385 |
| HphI | GGTGA | 3 cut(s) | 113, 163, 516 |
| Hpy166II | GTNNAC | 2 cut(s) | 385, 469 |
| Hpy188I | TCNGA | 1 cut(s) | 149 |
| Hpy188III | TCNNGA | 2 cut(s) | 10, 315 |
| Hpy8I | GTNNAC | 2 cut(s) | 385, 469 |
| Hpy99I | CGWCG | 2 cut(s) | 165, 298 |
| HpyAV | CCTTC | 3 cut(s) | 257, 465, 581 |
| HpyCH4III | ACNGT | 3 cut(s) | 110, 165, 382 |
| HpyCH4IV | ACGT | 1 cut(s) | 346 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 77, 84, 546, 549 |
| HpyF3I | CTNAG | 4 cut(s) | 225, 257, 484, 526 |
| HpySE526I | ACGT | 1 cut(s) | 346 |
| Hsp92I | GRCGYC | 1 cut(s) | 328 |
| Hsp92II | CATG | 1 cut(s) | 407 |
| HspAI | GCGC | 1 cut(s) | 78 |
| KspAI | GTTAAC | 1 cut(s) | 385 |
| Kzo9I | GATC | 4 cut(s) | 311, 419, 451, 487 |
| LmnI | GCTCC | 4 cut(s) | 92, 221, 395, 532 |
| LpnPI | CCDG | 9 cut(s) | 25, 57, 172, 195, 212, 222, 351, 378, 465 |
| Lsp1109I | GCAGC | 3 cut(s) | 62, 108, 527 |
| MaeI | CTAG | 1 cut(s) | 498 |
| MaeII | ACGT | 1 cut(s) | 346 |
| MaeIII | GTNAC | 3 cut(s) | 35, 101, 320 |
| MalI | GATC | 4 cut(s) | 313, 421, 453, 489 |
| MbiI | CCGCTC | 1 cut(s) | 359 |
| MboI | GATC | 4 cut(s) | 311, 419, 451, 487 |
| MboII | GAAGA | 4 cut(s) | 30, 36, 71, 452 |
| MflI | RGATCY | 1 cut(s) | 451 |
| MhlI | GDGCHC | 2 cut(s) | 47, 226 |
| MlyI | GAGTC | 3 cut(s) | 123, 474, 567 |
| MmeI | TCCRAC | 1 cut(s) | 373 |
| MseI | TTAA | 1 cut(s) | 384 |
| MspA1I | CMGCKG | 3 cut(s) | 93, 461, 552 |
| MspR9I | CCNGG | 2 cut(s) | 210, 366 |
| MvaI | CCWGG | 2 cut(s) | 210, 366 |
| MvnI | CGCG | 2 cut(s) | 49, 316 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 77, 84, 546, 549 |
| NdeII | GATC | 4 cut(s) | 311, 419, 451, 487 |
| NlaIII | CATG | 1 cut(s) | 407 |
| NlaIV | GGNNCC | 4 cut(s) | 44, 45, 88, 363 |
| NmuCI | GTSAC | 2 cut(s) | 101, 320 |
| NotI | GCGGCCGC | 1 cut(s) | 544 |
| NruI | TCGCGA | 1 cut(s) | 316 |
| NspI | RCATGY | 1 cut(s) | 407 |
| PciI | ACATGT | 1 cut(s) | 403 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 114 |
| Ple19I | CGATCG | 1 cut(s) | 314 |
| PleI | GAGTC | 3 cut(s) | 123, 473, 566 |
| PpsI | GAGTC | 3 cut(s) | 123, 473, 566 |
| PscI | ACATGT | 1 cut(s) | 403 |
| Psp124BI | GAGCTC | 1 cut(s) | 226 |
| Psp1406I | AACGTT | 1 cut(s) | 346 |
| Psp6I | CCWGG | 2 cut(s) | 208, 364 |
| PspFI | CCCAGC | 1 cut(s) | 186 |
| PspGI | CCWGG | 2 cut(s) | 208, 364 |
| PspN4I | GGNNCC | 4 cut(s) | 44, 45, 88, 363 |
| PspOMI | GGGCCC | 1 cut(s) | 43 |
| PspPI | GGNCC | 4 cut(s) | 43, 44, 242, 266 |
| PstNI | CAGNNNCTG | 1 cut(s) | 209 |
| PsuI | RGATCY | 1 cut(s) | 451 |
| PvuI | CGATCG | 1 cut(s) | 314 |
| RruI | TCGCGA | 1 cut(s) | 316 |
| RsaI | GTAC | 2 cut(s) | 116, 582 |
| RsaNI | GTAC | 2 cut(s) | 115, 581 |
| SacI | GAGCTC | 1 cut(s) | 226 |
| SaqAI | TTAA | 1 cut(s) | 384 |
| Sau3AI | GATC | 4 cut(s) | 311, 419, 451, 487 |
| Sau96I | GGNCC | 4 cut(s) | 43, 44, 242, 266 |
| SchI | GAGTC | 3 cut(s) | 123, 474, 567 |
| ScrFI | CCNGG | 2 cut(s) | 210, 366 |
| SduI | GDGCHC | 2 cut(s) | 47, 226 |
| SetI | ASST | 7 cut(s) | 37, 123, 176, 226, 343, 349, 367 |
| SfcI | CTRYAG | 1 cut(s) | 246 |
| SspMI | CTAG | 1 cut(s) | 498 |
| SstI | GAGCTC | 1 cut(s) | 226 |
| StyD4I | CCNGG | 2 cut(s) | 208, 364 |
| StyI | CCWWGG | 1 cut(s) | 433 |
| TaaI | ACNGT | 3 cut(s) | 110, 165, 382 |
| TaiI | ACGT | 1 cut(s) | 349 |
| TaqI | TCGA | 1 cut(s) | 289 |
| TatI | WGTACW | 1 cut(s) | 580 |
| TauI | GCSGC | 7 cut(s) | 141, 362, 432, 497, 546, 549, 552 |
| Tru1I | TTAA | 1 cut(s) | 384 |
| Tru9I | TTAA | 1 cut(s) | 384 |
| TscAI | CASTG | 1 cut(s) | 542 |
| TseFI | GTSAC | 2 cut(s) | 101, 320 |
| TseI | GCWGC | 3 cut(s) | 75, 121, 540 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 320 |
| TspRI | CASTG | 1 cut(s) | 542 |
| XceI | RCATGY | 1 cut(s) | 407 |
| XspI | CTAG | 1 cut(s) | 498 |