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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1026 |
| AccB1I | GGYRCC | 5 cut(s) | 511, 529, 550, 1098, 1352 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1398 |
| AccBSI | CCGCTC | 8 cut(s) | 191, 546, 741, 955, 1096, 1117, 1463, 1512 |
| AccI | GTMKAC | 1 cut(s) | 854 |
| AccII | CGCG | 8 cut(s) | 231, 291, 497, 517, 593, 1169, 1550, 1587 |
| AccIII | TCCGGA | 1 cut(s) | 36 |
| AclWI | GGATC | 3 cut(s) | 592, 605, 1183 |
| AcoI | YGGCCR | 1 cut(s) | 1492 |
| AcsI | RAATTY | 1 cut(s) | 1535 |
| AcuI | CTGAAG | 4 cut(s) | 342, 587, 862, 1178 |
| AcvI | CACGTG | 1 cut(s) | 64 |
| AcyI | GRCGYC | 6 cut(s) | 23, 387, 512, 932, 1023, 1562 |
| AfaI | GTAC | 4 cut(s) | 68, 203, 1319, 1459 |
| AflIII | ACRYGT | 4 cut(s) | 61, 63, 118, 1140 |
| AgsI | TTSAA | 5 cut(s) | 94, 143, 301, 1295, 1502 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1638 |
| AjiI | CACGTC | 1 cut(s) | 898 |
| AjnI | CCWGG | 8 cut(s) | 336, 360, 924, 945, 1005, 1067, 1101, 1489 |
| AleI | CACNNNNGTG | 1 cut(s) | 1613 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 780, 812 |
| AluBI | AGCT | 8 cut(s) | 53, 961, 1015, 1078, 1250, 1361, 1442, 1472 |
| AluI | AGCT | 8 cut(s) | 53, 961, 1015, 1078, 1250, 1361, 1442, 1472 |
| Alw26I | GTCTC | 2 cut(s) | 904, 1625 |
| AlwI | GGATC | 3 cut(s) | 592, 605, 1183 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 946 |
| Ama87I | CYCGRG | 3 cut(s) | 701, 1513, 1611 |
| Aor13HI | TCCGGA | 1 cut(s) | 36 |
| ApoI | RAATTY | 1 cut(s) | 1535 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 601, 633 |
| AspLEI | GCGC | 7 cut(s) | 370, 497, 514, 570, 615, 1550, 1589 |
| AspS9I | GGNCC | 6 cut(s) | 313, 489, 663, 979, 1003, 1603 |
| AsuC2I | CCSGG | 4 cut(s) | 273, 661, 1612, 1613 |
| AsuHPI | GGTGA | 6 cut(s) | 649, 797, 797, 1064, 1174, 1253 |
| AvaI | CYCGRG | 3 cut(s) | 701, 1513, 1611 |
| AvaII | GGWCC | 2 cut(s) | 313, 489 |
| BaeGI | GKGCMC | 2 cut(s) | 532, 897 |
| BalI | TGGCCA | 1 cut(s) | 1494 |
| BamHI | GGATCC | 1 cut(s) | 597 |
| BanI | GGYRCC | 5 cut(s) | 511, 529, 550, 1098, 1352 |
| BanII | GRGCYC | 3 cut(s) | 410, 912, 1510 |
| BauI | CACGAG | 2 cut(s) | 213, 914 |
| BbrPI | CACGTG | 1 cut(s) | 64 |
| BbsI | GAAGAC | 1 cut(s) | 380 |
| BbvCI | CCTCAGC | 2 cut(s) | 962, 1263 |
| BccI | CCATC | 6 cut(s) | 93, 418, 596, 1400, 1438, 1613 |
| BceAI | ACGGC | 5 cut(s) | 60, 85, 600, 845, 1257 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1037, 1071 |
| BciT130I | CCWGG | 8 cut(s) | 338, 362, 926, 947, 1007, 1069, 1103, 1491 |
| BcnI | CCSGG | 4 cut(s) | 273, 661, 1612, 1613 |
| BcoDI | GTCTC | 2 cut(s) | 904, 1625 |
| BfmI | CTRYAG | 3 cut(s) | 48, 723, 1376 |
| BfoI | RGCGCY | 2 cut(s) | 515, 616 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 719 |
| Bme18I | GGWCC | 2 cut(s) | 313, 489 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1638 |
| BmeT110I | CYCGRG | 3 cut(s) | 701, 1513, 1611 |
| BmgBI | CACGTC | 1 cut(s) | 898 |
| BmgT120I | GGNCC | 6 cut(s) | 313, 489, 663, 979, 1003, 1603 |
| BmrI | ACTGGG | 4 cut(s) | 830, 1168, 1408, 1632 |
| BmsI | GCATC | 5 cut(s) | 249, 1045, 1054, 1362, 1404 |
| BmuI | ACTGGG | 4 cut(s) | 830, 1168, 1408, 1632 |
| BoxI | GACNNNNGTC | 1 cut(s) | 860 |
| BpiI | GAAGAC | 1 cut(s) | 380 |
| BpmI | CTGGAG | 7 cut(s) | 359, 613, 857, 968, 1124, 1256, 1619 |
| Bpu10I | CCTNAGC | 3 cut(s) | 962, 1263, 1357 |
| BpuMI | CCSGG | 4 cut(s) | 273, 661, 1612, 1613 |
| BsaAI | YACGTR | 1 cut(s) | 64 |
| BsaHI | GRCGYC | 6 cut(s) | 23, 387, 512, 932, 1023, 1562 |
| BsaI | GGTCTC | 1 cut(s) | 1625 |
| BsaWI | WCCGGW | 1 cut(s) | 36 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 332, 362, 785, 815 |
| Bse118I | RCCGGY | 3 cut(s) | 491, 1349, 1417 |
| Bse1I | ACTGG | 6 cut(s) | 630, 825, 1163, 1403, 1455, 1638 |
| Bse3DI | GCAATG | 1 cut(s) | 315 |
| BseAI | TCCGGA | 1 cut(s) | 36 |
| BseBI | CCWGG | 8 cut(s) | 338, 362, 926, 947, 1007, 1069, 1103, 1491 |
| BseGI | GGATG | 3 cut(s) | 104, 1430, 1624 |
| BseMI | GCAATG | 1 cut(s) | 315 |
| BseMII | CTCAG | 3 cut(s) | 395, 953, 1254 |
| BseNI | ACTGG | 6 cut(s) | 630, 825, 1163, 1403, 1455, 1638 |
| BseRI | GAGGAG | 2 cut(s) | 656, 659 |
| BseSI | GKGCMC | 2 cut(s) | 532, 897 |
| BseYI | CCCAGC | 1 cut(s) | 1589 |
| BsgI | GTGCAG | 1 cut(s) | 1445 |
| Bsh1236I | CGCG | 8 cut(s) | 231, 291, 497, 517, 593, 1169, 1550, 1587 |
| Bsh1285I | CGRYCG | 2 cut(s) | 858, 1422 |
| BshNI | GGYRCC | 5 cut(s) | 511, 529, 550, 1098, 1352 |
| BsiEI | CGRYCG | 2 cut(s) | 858, 1422 |
| BsiHKCI | CYCGRG | 3 cut(s) | 701, 1513, 1611 |
| BsiSI | CCGG | 8 cut(s) | 37, 272, 357, 492, 660, 1350, 1418, 1612 |
| BslFI | GGGAC | 6 cut(s) | 502, 1004, 1129, 1169, 1567, 1626 |
| BsmAI | GTCTC | 2 cut(s) | 904, 1625 |
| BsmBI | CGTCTC | 1 cut(s) | 904 |
| BsmFI | GGGAC | 6 cut(s) | 502, 1004, 1129, 1169, 1567, 1626 |
| Bso31I | GGTCTC | 1 cut(s) | 1625 |
| BsoBI | CYCGRG | 3 cut(s) | 701, 1513, 1611 |
| Bsp1286I | GDGCHC | 5 cut(s) | 410, 532, 897, 912, 1510 |
| Bsp13I | TCCGGA | 1 cut(s) | 36 |
| Bsp143I | GATC | 3 cut(s) | 597, 1188, 1224 |
| BspCNI | CTCAG | 3 cut(s) | 396, 954, 1255 |
| BspEI | TCCGGA | 1 cut(s) | 36 |
| BspFNI | CGCG | 8 cut(s) | 231, 291, 497, 517, 593, 1169, 1550, 1587 |
| BspMAI | CTGCAG | 1 cut(s) | 1380 |
| BspPI | GGATC | 3 cut(s) | 592, 605, 1183 |
| BspT107I | GGYRCC | 5 cut(s) | 511, 529, 550, 1098, 1352 |
| BspTNI | GGTCTC | 1 cut(s) | 1625 |
| BsrBI | CCGCTC | 8 cut(s) | 191, 546, 741, 955, 1096, 1117, 1463, 1512 |
| BsrDI | GCAATG | 1 cut(s) | 315 |
| BsrFI | RCCGGY | 3 cut(s) | 491, 1349, 1417 |
| BsrI | ACTGG | 6 cut(s) | 630, 825, 1163, 1403, 1455, 1638 |
| BssAI | RCCGGY | 3 cut(s) | 491, 1349, 1417 |
| BssMI | GATC | 3 cut(s) | 597, 1188, 1224 |
| BssNI | GRCGYC | 6 cut(s) | 23, 387, 512, 932, 1023, 1562 |
| BssSI | CACGAG | 2 cut(s) | 213, 914 |
| BssT1I | CCWWGG | 2 cut(s) | 1125, 1434 |
| Bst2BI | CACGAG | 2 cut(s) | 213, 914 |
| Bst2UI | CCWGG | 8 cut(s) | 338, 362, 926, 947, 1007, 1069, 1103, 1491 |
| Bst4CI | ACNGT | 7 cut(s) | 49, 182, 317, 379, 565, 785, 1052 |
| Bst6I | CTCTTC | 1 cut(s) | 633 |
| BstACI | GRCGYC | 6 cut(s) | 23, 387, 512, 932, 1023, 1562 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 734 |
| BstBAI | YACGTR | 1 cut(s) | 64 |
| BstDEI | CTNAG | 4 cut(s) | 404, 962, 1263, 1357 |
| BstDSI | CCRYGG | 3 cut(s) | 181, 423, 515 |
| BstEII | GGTNACC | 3 cut(s) | 583, 655, 1162 |
| BstF5I | GGATG | 3 cut(s) | 104, 1430, 1624 |
| BstFNI | CGCG | 8 cut(s) | 231, 291, 497, 517, 593, 1169, 1550, 1587 |
| BstH2I | RGCGCY | 2 cut(s) | 515, 616 |
| BstHHI | GCGC | 7 cut(s) | 370, 497, 514, 570, 615, 1550, 1589 |
| BstKTI | GATC | 3 cut(s) | 600, 1191, 1227 |
| BstMAI | GTCTC | 2 cut(s) | 904, 1625 |
| BstMBI | GATC | 3 cut(s) | 597, 1188, 1224 |
| BstMCI | CGRYCG | 2 cut(s) | 858, 1422 |
| BstNI | CCWGG | 8 cut(s) | 338, 362, 926, 947, 1007, 1069, 1103, 1491 |
| BstNSI | RCATGY | 2 cut(s) | 122, 1144 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 860 |
| BstPI | GGTNACC | 3 cut(s) | 583, 655, 1162 |
| BstSFI | CTRYAG | 3 cut(s) | 48, 723, 1376 |
| BstSLI | GKGCMC | 2 cut(s) | 532, 897 |
| BstUI | CGCG | 8 cut(s) | 231, 291, 497, 517, 593, 1169, 1550, 1587 |
| BstV2I | GAAGAC | 1 cut(s) | 380 |
| BstX2I | RGATCY | 2 cut(s) | 597, 1188 |
| BstYI | RGATCY | 2 cut(s) | 597, 1188 |
| BtgI | CCRYGG | 3 cut(s) | 181, 423, 515 |
| BtgZI | GCGATG | 1 cut(s) | 574 |
| BtrI | CACGTC | 1 cut(s) | 898 |
| BtsCI | GGATG | 3 cut(s) | 104, 1430, 1624 |
| BtsI | GCAGTG | 2 cut(s) | 466, 735 |
| BtsIMutI | CAGTG | 6 cut(s) | 401, 466, 570, 637, 735, 1328 |
| CaiI | CAGNNNCTG | 1 cut(s) | 946 |
| CfoI | GCGC | 7 cut(s) | 370, 497, 514, 570, 615, 1550, 1589 |
| Cfr10I | RCCGGY | 3 cut(s) | 491, 1349, 1417 |
| Cfr13I | GGNCC | 6 cut(s) | 313, 489, 663, 979, 1003, 1603 |
| Cfr42I | CCGCGG | 1 cut(s) | 518 |
| Cfr9I | CCCGGG | 1 cut(s) | 1611 |
| CseI | GACGC | 5 cut(s) | 31, 302, 395, 921, 1570 |
| Csp6I | GTAC | 4 cut(s) | 67, 202, 1318, 1458 |
| CviAII | CATG | 4 cut(s) | 119, 436, 1141, 1496 |
| CviQI | GTAC | 4 cut(s) | 67, 202, 1318, 1458 |
| DdeI | CTNAG | 4 cut(s) | 404, 962, 1263, 1357 |
| DinI | GGCGCC | 1 cut(s) | 513 |
| DpnI | GATC | 3 cut(s) | 599, 1190, 1226 |
| DpnII | GATC | 3 cut(s) | 597, 1188, 1224 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1638 |
| EaeI | YGGCCR | 1 cut(s) | 1492 |
| Eam1104I | CTCTTC | 1 cut(s) | 633 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1638 |
| EarI | CTCTTC | 1 cut(s) | 633 |
| EciI | GGCGGA | 5 cut(s) | 201, 271, 687, 1145, 1328 |
| Eco130I | CCWWGG | 2 cut(s) | 1125, 1434 |
| Eco24I | GRGCYC | 3 cut(s) | 410, 912, 1510 |
| Eco31I | GGTCTC | 1 cut(s) | 1625 |
| Eco47I | GGWCC | 2 cut(s) | 313, 489 |
| Eco57I | CTGAAG | 4 cut(s) | 342, 587, 862, 1178 |
| Eco72I | CACGTG | 1 cut(s) | 64 |
| Eco88I | CYCGRG | 3 cut(s) | 701, 1513, 1611 |
| Eco91I | GGTNACC | 3 cut(s) | 583, 655, 1162 |
| EcoO65I | GGTNACC | 3 cut(s) | 583, 655, 1162 |
| EcoRI | GAATTC | 1 cut(s) | 1535 |
| EcoRII | CCWGG | 8 cut(s) | 336, 360, 924, 945, 1005, 1067, 1101, 1489 |
| EcoT14I | CCWWGG | 2 cut(s) | 1125, 1434 |
| EcoT38I | GRGCYC | 3 cut(s) | 410, 912, 1510 |
| EgeI | GGCGCC | 1 cut(s) | 513 |
| EheI | GGCGCC | 1 cut(s) | 513 |
| ErhI | CCWWGG | 2 cut(s) | 1125, 1434 |
| Esp3I | CGTCTC | 1 cut(s) | 904 |
| FaeI | CATG | 4 cut(s) | 122, 439, 1144, 1499 |
| FaqI | GGGAC | 6 cut(s) | 502, 1004, 1129, 1169, 1567, 1626 |
| FatI | CATG | 4 cut(s) | 118, 435, 1140, 1495 |
| FblI | GTMKAC | 1 cut(s) | 854 |
| FokI | GGATG | 3 cut(s) | 111, 1417, 1631 |
| FriOI | GRGCYC | 3 cut(s) | 410, 912, 1510 |
| GlaI | GCGC | 7 cut(s) | 369, 496, 513, 569, 614, 1549, 1588 |
| GsaI | CCCAGC | 1 cut(s) | 1593 |
| GsuI | CTGGAG | 7 cut(s) | 359, 613, 857, 968, 1124, 1256, 1619 |
| HaeII | RGCGCY | 2 cut(s) | 515, 616 |
| HapII | CCGG | 8 cut(s) | 37, 272, 357, 492, 660, 1350, 1418, 1612 |
| HgaI | GACGC | 5 cut(s) | 31, 302, 395, 921, 1570 |
| HhaI | GCGC | 7 cut(s) | 370, 497, 514, 570, 615, 1550, 1589 |
| Hin1I | GRCGYC | 6 cut(s) | 23, 387, 512, 932, 1023, 1562 |
| Hin1II | CATG | 4 cut(s) | 122, 439, 1144, 1499 |
| Hin6I | GCGC | 7 cut(s) | 368, 495, 512, 568, 613, 1548, 1587 |
| HinP1I | GCGC | 7 cut(s) | 368, 495, 512, 568, 613, 1548, 1587 |
| HincII | GTYRAC | 2 cut(s) | 620, 855 |
| HindII | GTYRAC | 2 cut(s) | 620, 855 |
| HinfI | GANTC | 7 cut(s) | 211, 259, 626, 749, 869, 1202, 1295 |
| HpaII | CCGG | 8 cut(s) | 37, 272, 357, 492, 660, 1350, 1418, 1612 |
| HphI | GGTGA | 6 cut(s) | 649, 797, 797, 1064, 1174, 1253 |
| Hpy166II | GTNNAC | 5 cut(s) | 67, 385, 620, 788, 855 |
| Hpy188I | TCNGA | 3 cut(s) | 81, 264, 415 |
| Hpy188III | TCNNGA | 6 cut(s) | 37, 215, 301, 836, 985, 1598 |
| Hpy8I | GTNNAC | 5 cut(s) | 67, 385, 620, 788, 855 |
| Hpy99I | CGWCG | 6 cut(s) | 25, 296, 785, 1028, 1035, 1052 |
| HpyCH4III | ACNGT | 7 cut(s) | 49, 182, 317, 379, 565, 785, 1052 |
| HpyCH4IV | ACGT | 5 cut(s) | 63, 897, 1023, 1033, 1083 |
| HpyCH4V | TGCA | 2 cut(s) | 1378, 1426 |
| HpyF3I | CTNAG | 4 cut(s) | 404, 962, 1263, 1357 |
| HpySE526I | ACGT | 5 cut(s) | 63, 897, 1023, 1033, 1083 |
| Hsp92I | GRCGYC | 6 cut(s) | 23, 387, 512, 932, 1023, 1562 |
| Hsp92II | CATG | 4 cut(s) | 122, 439, 1144, 1499 |
| HspAI | GCGC | 7 cut(s) | 368, 495, 512, 568, 613, 1548, 1587 |
| KasI | GGCGCC | 1 cut(s) | 511 |
| Kpn2I | TCCGGA | 1 cut(s) | 36 |
| KspI | CCGCGG | 1 cut(s) | 518 |
| Kzo9I | GATC | 3 cut(s) | 597, 1188, 1224 |
| LweI | GCATC | 5 cut(s) | 249, 1045, 1054, 1362, 1404 |
| MaeII | ACGT | 5 cut(s) | 63, 897, 1023, 1033, 1083 |
| MaeIII | GTNAC | 6 cut(s) | 10, 43, 461, 583, 655, 1162 |
| MalI | GATC | 3 cut(s) | 599, 1190, 1226 |
| MbiI | CCGCTC | 8 cut(s) | 191, 546, 741, 955, 1096, 1117, 1463, 1512 |
| MboI | GATC | 3 cut(s) | 597, 1188, 1224 |
| MboII | GAAGA | 4 cut(s) | 385, 650, 691, 1189 |
| MflI | RGATCY | 2 cut(s) | 597, 1188 |
| MhlI | GDGCHC | 5 cut(s) | 410, 532, 897, 912, 1510 |
| MlsI | TGGCCA | 1 cut(s) | 1494 |
| MluCI | AATT | 3 cut(s) | 331, 1535, 1571 |
| MluNI | TGGCCA | 1 cut(s) | 1494 |
| Mly113I | GGCGCC | 1 cut(s) | 512 |
| MlyI | GAGTC | 3 cut(s) | 205, 620, 1211 |
| Mox20I | TGGCCA | 1 cut(s) | 1494 |
| MroI | TCCGGA | 1 cut(s) | 36 |
| MscI | TGGCCA | 1 cut(s) | 1494 |
| MseI | TTAA | 1 cut(s) | 32 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1613 |
| Msp20I | TGGCCA | 1 cut(s) | 1494 |
| MspA1I | CMGCKG | 5 cut(s) | 476, 517, 1198, 1289, 1472 |
| MspI | CCGG | 8 cut(s) | 37, 272, 357, 492, 660, 1350, 1418, 1612 |
| MvaI | CCWGG | 8 cut(s) | 338, 362, 926, 947, 1007, 1069, 1103, 1491 |
| MvnI | CGCG | 8 cut(s) | 231, 291, 497, 517, 593, 1169, 1550, 1587 |
| NarI | GGCGCC | 1 cut(s) | 512 |
| NciI | CCSGG | 4 cut(s) | 273, 661, 1612, 1613 |
| NdeII | GATC | 3 cut(s) | 597, 1188, 1224 |
| NlaIII | CATG | 4 cut(s) | 122, 439, 1144, 1499 |
| NmeAIII | GCCGAG | 1 cut(s) | 793 |
| NmuCI | GTSAC | 3 cut(s) | 461, 655, 1162 |
| NspI | RCATGY | 2 cut(s) | 122, 1144 |
| OliI | CACNNNNGTG | 1 cut(s) | 1613 |
| PciI | ACATGT | 2 cut(s) | 118, 1140 |
| PfeI | GAWTC | 4 cut(s) | 259, 749, 869, 1295 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1398 |
| PfoI | TCCNGGA | 1 cut(s) | 336 |
| PleI | GAGTC | 3 cut(s) | 205, 620, 1210 |
| PluTI | GGCGCC | 1 cut(s) | 515 |
| PmaCI | CACGTG | 1 cut(s) | 64 |
| PmlI | CACGTG | 1 cut(s) | 64 |
| PpsI | GAGTC | 3 cut(s) | 205, 620, 1210 |
| Ppu21I | YACGTR | 1 cut(s) | 64 |
| PscI | ACATGT | 2 cut(s) | 118, 1140 |
| PshAI | GACNNNNGTC | 1 cut(s) | 860 |
| Psp6I | CCWGG | 8 cut(s) | 336, 360, 924, 945, 1005, 1067, 1101, 1489 |
| PspCI | CACGTG | 1 cut(s) | 64 |
| PspEI | GGTNACC | 3 cut(s) | 583, 655, 1162 |
| PspFI | CCCAGC | 1 cut(s) | 1589 |
| PspGI | CCWGG | 8 cut(s) | 336, 360, 924, 945, 1005, 1067, 1101, 1489 |
| PspPI | GGNCC | 6 cut(s) | 313, 489, 663, 979, 1003, 1603 |
| PstI | CTGCAG | 1 cut(s) | 1380 |
| PstNI | CAGNNNCTG | 1 cut(s) | 946 |
| PsuI | RGATCY | 2 cut(s) | 597, 1188 |
| PvuII | CAGCTG | 1 cut(s) | 1472 |
| RsaI | GTAC | 4 cut(s) | 68, 203, 1319, 1459 |
| RsaNI | GTAC | 4 cut(s) | 67, 202, 1318, 1458 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1613 |
| SacII | CCGCGG | 1 cut(s) | 518 |
| SalI | GTCGAC | 1 cut(s) | 853 |
| SaqAI | TTAA | 1 cut(s) | 32 |
| Sau3AI | GATC | 3 cut(s) | 597, 1188, 1224 |
| Sau96I | GGNCC | 6 cut(s) | 313, 489, 663, 979, 1003, 1603 |
| SchI | GAGTC | 3 cut(s) | 205, 620, 1211 |
| SduI | GDGCHC | 5 cut(s) | 410, 532, 897, 912, 1510 |
| SfaNI | GCATC | 5 cut(s) | 249, 1045, 1054, 1362, 1404 |
| SfcI | CTRYAG | 3 cut(s) | 48, 723, 1376 |
| SfoI | GGCGCC | 1 cut(s) | 513 |
| Sfr303I | CCGCGG | 1 cut(s) | 518 |
| SgrBI | CCGCGG | 1 cut(s) | 518 |
| SinI | GGWCC | 2 cut(s) | 313, 489 |
| SmaI | CCCGGG | 1 cut(s) | 1613 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1613 |
| Sse9I | AATT | 3 cut(s) | 331, 1535, 1571 |
| SspDI | GGCGCC | 1 cut(s) | 511 |
| StyI | CCWWGG | 2 cut(s) | 1125, 1434 |
| TaaI | ACNGT | 7 cut(s) | 49, 182, 317, 379, 565, 785, 1052 |
| TaiI | ACGT | 5 cut(s) | 66, 900, 1026, 1036, 1086 |
| TaqI | TCGA | 4 cut(s) | 854, 1026, 1395, 1412 |
| TaqII | GACCGA | 1 cut(s) | 1349 |
| TasI | AATT | 3 cut(s) | 331, 1535, 1571 |
| TatI | WGTACW | 1 cut(s) | 1317 |
| TfiI | GAWTC | 4 cut(s) | 259, 749, 869, 1295 |
| Tru1I | TTAA | 1 cut(s) | 32 |
| Tru9I | TTAA | 1 cut(s) | 32 |
| TscAI | CASTG | 6 cut(s) | 408, 466, 570, 637, 735, 1335 |
| TseFI | GTSAC | 3 cut(s) | 461, 655, 1162 |
| Tsp45I | GTSAC | 3 cut(s) | 461, 655, 1162 |
| TspDTI | ATGAA | 1 cut(s) | 741 |
| TspGWI | ACGGA | 5 cut(s) | 111, 556, 590, 892, 1573 |
| TspMI | CCCGGG | 1 cut(s) | 1611 |
| TspRI | CASTG | 6 cut(s) | 408, 466, 570, 637, 735, 1335 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1398 |
| VpaK11BI | GGWCC | 2 cut(s) | 313, 489 |
| XapI | RAATTY | 1 cut(s) | 1535 |
| XceI | RCATGY | 2 cut(s) | 122, 1144 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 452, 943 |
| XmaI | CCCGGG | 1 cut(s) | 1611 |
| XmiI | GTMKAC | 1 cut(s) | 854 |
| ZraI | GACGTC | 1 cut(s) | 1024 |