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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 329, 473 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 339 |
| AccBSI | CCGCTC | 3 cut(s) | 37, 216, 443 |
| AccII | CGCG | 1 cut(s) | 12 |
| AclWI | GGATC | 1 cut(s) | 457 |
| AcoI | YGGCCR | 1 cut(s) | 485 |
| AcuI | CTGAAG | 2 cut(s) | 119, 338 |
| AcyI | GRCGYC | 2 cut(s) | 330, 474 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 36, 220, 339, 483 |
| AgsI | TTSAA | 1 cut(s) | 94 |
| AjiI | CACGTC | 1 cut(s) | 61 |
| AjnI | CCWGG | 1 cut(s) | 445 |
| AleI | CACNNNNGTG | 1 cut(s) | 422 |
| AluBI | AGCT | 4 cut(s) | 19, 86, 203, 465 |
| AluI | AGCT | 4 cut(s) | 19, 86, 203, 465 |
| Alw26I | GTCTC | 2 cut(s) | 67, 379 |
| AlwI | GGATC | 1 cut(s) | 457 |
| Ama87I | CYCGRG | 1 cut(s) | 44 |
| AoxI | GGCC | 2 cut(s) | 393, 485 |
| ApeKI | GCWGC | 3 cut(s) | 227, 465, 512 |
| AspLEI | GCGC | 2 cut(s) | 332, 476 |
| AspS9I | GGNCC | 1 cut(s) | 40 |
| AsuC2I | CCSGG | 2 cut(s) | 193, 364 |
| AsuHPI | GGTGA | 5 cut(s) | 19, 178, 355, 436, 502 |
| AvaI | CYCGRG | 1 cut(s) | 44 |
| AvaII | GGWCC | 1 cut(s) | 40 |
| BanI | GGYRCC | 2 cut(s) | 329, 473 |
| BanII | GRGCYC | 1 cut(s) | 437 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 117, 149 |
| BbvI | GCAGC | 3 cut(s) | 214, 452, 499 |
| BccI | CCATC | 2 cut(s) | 268, 407 |
| BceAI | ACGGC | 1 cut(s) | 215 |
| BciT130I | CCWGG | 1 cut(s) | 447 |
| BcnI | CCSGG | 2 cut(s) | 193, 364 |
| BcoDI | GTCTC | 2 cut(s) | 67, 379 |
| BfaI | CTAG | 2 cut(s) | 71, 407 |
| BfoI | RGCGCY | 2 cut(s) | 333, 477 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 236 |
| BisI | GCNGC | 8 cut(s) | 13, 214, 228, 282, 466, 485, 510, 513 |
| BlsI | GCNGC | 8 cut(s) | 14, 215, 229, 283, 467, 486, 511, 514 |
| Bme1390I | CCNGG | 3 cut(s) | 193, 364, 447 |
| Bme18I | GGWCC | 1 cut(s) | 40 |
| BmeT110I | CYCGRG | 1 cut(s) | 44 |
| BmgBI | CACGTC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 1 cut(s) | 40 |
| BmiI | GGNNCC | 3 cut(s) | 41, 331, 475 |
| BmrFI | CCNGG | 3 cut(s) | 193, 364, 447 |
| BmrI | ACTGGG | 1 cut(s) | 349 |
| BmsI | GCATC | 2 cut(s) | 359, 417 |
| BmuI | ACTGGG | 1 cut(s) | 349 |
| BpuMI | CCSGG | 2 cut(s) | 193, 364 |
| BsaHI | GRCGYC | 2 cut(s) | 330, 474 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 47, 77 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 36, 220, 339, 483 |
| Bse118I | RCCGGY | 1 cut(s) | 487 |
| Bse1I | ACTGG | 1 cut(s) | 344 |
| BseBI | CCWGG | 1 cut(s) | 447 |
| BseGI | GGATG | 3 cut(s) | 10, 350, 418 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 36, 220, 339, 483 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BseNI | ACTGG | 1 cut(s) | 344 |
| BseX3I | CGGCCG | 1 cut(s) | 485 |
| BseXI | GCAGC | 3 cut(s) | 214, 452, 499 |
| Bsh1236I | CGCG | 1 cut(s) | 12 |
| Bsh1285I | CGRYCG | 1 cut(s) | 488 |
| BshFI | GGCC | 2 cut(s) | 395, 487 |
| BshNI | GGYRCC | 2 cut(s) | 329, 473 |
| BsiEI | CGRYCG | 1 cut(s) | 488 |
| BsiHKCI | CYCGRG | 1 cut(s) | 44 |
| BsiSI | CCGG | 3 cut(s) | 193, 364, 488 |
| BslFI | GGGAC | 1 cut(s) | 53 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 36, 220, 339, 483 |
| BsmAI | GTCTC | 2 cut(s) | 67, 379 |
| BsmBI | CGTCTC | 1 cut(s) | 67 |
| BsmFI | GGGAC | 1 cut(s) | 53 |
| BsnI | GGCC | 2 cut(s) | 395, 487 |
| BsoBI | CYCGRG | 1 cut(s) | 44 |
| Bsp1286I | GDGCHC | 1 cut(s) | 437 |
| Bsp143I | GATC | 1 cut(s) | 449 |
| BspANI | GGCC | 2 cut(s) | 395, 487 |
| BspCNI | CTCAG | 1 cut(s) | 196 |
| BspFNI | CGCG | 1 cut(s) | 12 |
| BspHI | TCATGA | 1 cut(s) | 270 |
| BspLI | GGNNCC | 3 cut(s) | 41, 331, 475 |
| BspPI | GGATC | 1 cut(s) | 457 |
| BspQI | GCTCTTC | 1 cut(s) | 203 |
| BspT107I | GGYRCC | 2 cut(s) | 329, 473 |
| BsrBI | CCGCTC | 3 cut(s) | 37, 216, 443 |
| BsrFI | RCCGGY | 1 cut(s) | 487 |
| BsrI | ACTGG | 1 cut(s) | 344 |
| BssAI | RCCGGY | 1 cut(s) | 487 |
| BssMI | GATC | 1 cut(s) | 449 |
| BssNI | GRCGYC | 2 cut(s) | 330, 474 |
| Bst2UI | CCWGG | 1 cut(s) | 447 |
| Bst6I | CTCTTC | 2 cut(s) | 203, 495 |
| BstACI | GRCGYC | 2 cut(s) | 330, 474 |
| BstC8I | GCNNGC | 2 cut(s) | 10, 17 |
| BstDEI | CTNAG | 3 cut(s) | 117, 204, 219 |
| BstF5I | GGATG | 3 cut(s) | 10, 350, 418 |
| BstFNI | CGCG | 1 cut(s) | 12 |
| BstH2I | RGCGCY | 2 cut(s) | 333, 477 |
| BstHHI | GCGC | 2 cut(s) | 332, 476 |
| BstKTI | GATC | 1 cut(s) | 452 |
| BstMAI | GTCTC | 2 cut(s) | 67, 379 |
| BstMBI | GATC | 1 cut(s) | 449 |
| BstMCI | CGRYCG | 1 cut(s) | 488 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 158, 236, 287, 471 |
| BstNI | CCWGG | 1 cut(s) | 447 |
| BstNSI | RCATGY | 1 cut(s) | 316 |
| BstSCI | CCNGG | 3 cut(s) | 191, 362, 445 |
| BstUI | CGCG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 3 cut(s) | 214, 452, 499 |
| BstX2I | RGATCY | 1 cut(s) | 449 |
| BstYI | RGATCY | 1 cut(s) | 449 |
| BstZI | CGGCCG | 1 cut(s) | 485 |
| BsuRI | GGCC | 2 cut(s) | 395, 487 |
| BtrI | CACGTC | 1 cut(s) | 61 |
| BtsCI | GGATG | 3 cut(s) | 10, 350, 418 |
| Cac8I | GCNNGC | 2 cut(s) | 10, 17 |
| CciI | TCATGA | 1 cut(s) | 270 |
| CfoI | GCGC | 2 cut(s) | 332, 476 |
| Cfr10I | RCCGGY | 1 cut(s) | 487 |
| Cfr13I | GGNCC | 1 cut(s) | 40 |
| CviAII | CATG | 3 cut(s) | 271, 313, 391 |
| DdeI | CTNAG | 3 cut(s) | 117, 204, 219 |
| DinI | GGCGCC | 2 cut(s) | 331, 475 |
| DpnI | GATC | 1 cut(s) | 451 |
| DpnII | GATC | 1 cut(s) | 449 |
| DraI | TTTAAA | 1 cut(s) | 244 |
| EaeI | YGGCCR | 1 cut(s) | 485 |
| EagI | CGGCCG | 1 cut(s) | 485 |
| Eam1104I | CTCTTC | 2 cut(s) | 203, 495 |
| EarI | CTCTTC | 2 cut(s) | 203, 495 |
| EclXI | CGGCCG | 1 cut(s) | 485 |
| Eco24I | GRGCYC | 1 cut(s) | 437 |
| Eco47I | GGWCC | 1 cut(s) | 40 |
| Eco52I | CGGCCG | 1 cut(s) | 485 |
| Eco57I | CTGAAG | 2 cut(s) | 119, 338 |
| Eco88I | CYCGRG | 1 cut(s) | 44 |
| EcoO109I | RGGNCCY | 1 cut(s) | 40 |
| EcoRII | CCWGG | 1 cut(s) | 445 |
| EcoT38I | GRGCYC | 1 cut(s) | 437 |
| EgeI | GGCGCC | 2 cut(s) | 331, 475 |
| EheI | GGCGCC | 2 cut(s) | 331, 475 |
| Esp3I | CGTCTC | 1 cut(s) | 67 |
| FaeI | CATG | 3 cut(s) | 274, 316, 394 |
| FaiI | YATR | 7 cut(s) | 83, 261, 272, 314, 392, 422, 470 |
| FaqI | GGGAC | 1 cut(s) | 53 |
| FatI | CATG | 3 cut(s) | 270, 312, 390 |
| FauI | CCCGC | 3 cut(s) | 30, 132, 367 |
| Fnu4HI | GCNGC | 8 cut(s) | 13, 214, 228, 282, 466, 485, 510, 513 |
| FokI | GGATG | 3 cut(s) | 17, 337, 425 |
| FriOI | GRGCYC | 1 cut(s) | 437 |
| Fsp4HI | GCNGC | 8 cut(s) | 13, 214, 228, 282, 466, 485, 510, 513 |
| FspBI | CTAG | 2 cut(s) | 71, 407 |
| GlaI | GCGC | 2 cut(s) | 331, 475 |
| GluI | GCNGC | 8 cut(s) | 13, 214, 228, 282, 466, 485, 510, 513 |
| HaeII | RGCGCY | 2 cut(s) | 333, 477 |
| HaeIII | GGCC | 2 cut(s) | 395, 487 |
| HapII | CCGG | 3 cut(s) | 193, 364, 488 |
| HhaI | GCGC | 2 cut(s) | 332, 476 |
| Hin1I | GRCGYC | 2 cut(s) | 330, 474 |
| Hin1II | CATG | 3 cut(s) | 274, 316, 394 |
| Hin6I | GCGC | 2 cut(s) | 330, 474 |
| HinP1I | GCGC | 2 cut(s) | 330, 474 |
| HinfI | GANTC | 2 cut(s) | 130, 143 |
| HpaII | CCGG | 3 cut(s) | 193, 364, 488 |
| HphI | GGTGA | 5 cut(s) | 19, 178, 355, 436, 502 |
| Hpy166II | GTNNAC | 1 cut(s) | 493 |
| Hpy188I | TCNGA | 1 cut(s) | 459 |
| Hpy188III | TCNNGA | 1 cut(s) | 271 |
| Hpy8I | GTNNAC | 1 cut(s) | 493 |
| HpyAV | CCTTC | 3 cut(s) | 88, 280, 319 |
| HpyCH4IV | ACGT | 1 cut(s) | 60 |
| HpyCH4V | TGCA | 1 cut(s) | 468 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 158, 236, 287, 471 |
| HpyF3I | CTNAG | 3 cut(s) | 117, 204, 219 |
| HpySE526I | ACGT | 1 cut(s) | 60 |
| Hsp92I | GRCGYC | 2 cut(s) | 330, 474 |
| Hsp92II | CATG | 3 cut(s) | 274, 316, 394 |
| HspAI | GCGC | 2 cut(s) | 330, 474 |
| KasI | GGCGCC | 2 cut(s) | 329, 473 |
| Kzo9I | GATC | 1 cut(s) | 449 |
| LguI | GCTCTTC | 1 cut(s) | 203 |
| LmnI | GCTCC | 2 cut(s) | 448, 520 |
| LpnPI | CCDG | 9 cut(s) | 62, 182, 206, 276, 325, 377, 432, 459, 501 |
| Lsp1109I | GCAGC | 3 cut(s) | 214, 452, 499 |
| LweI | GCATC | 2 cut(s) | 359, 417 |
| MaeI | CTAG | 2 cut(s) | 71, 407 |
| MaeII | ACGT | 1 cut(s) | 60 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 1 cut(s) | 451 |
| MbiI | CCGCTC | 3 cut(s) | 37, 216, 443 |
| MboI | GATC | 1 cut(s) | 449 |
| MboII | GAAGA | 3 cut(s) | 125, 220, 512 |
| MflI | RGATCY | 1 cut(s) | 449 |
| MhlI | GDGCHC | 1 cut(s) | 437 |
| MluCI | AATT | 2 cut(s) | 304, 523 |
| Mly113I | GGCGCC | 2 cut(s) | 330, 474 |
| MlyI | GAGTC | 1 cut(s) | 152 |
| MmeI | TCCRAC | 1 cut(s) | 156 |
| MnlI | CCTC | 8 cut(s) | 53, 157, 172, 178, 229, 271, 406, 496 |
| MseI | TTAA | 1 cut(s) | 243 |
| MslI | CAYNNNNRTG | 1 cut(s) | 422 |
| MspA1I | CMGCKG | 3 cut(s) | 139, 484, 512 |
| MspI | CCGG | 3 cut(s) | 193, 364, 488 |
| MspR9I | CCNGG | 3 cut(s) | 193, 364, 447 |
| MvaI | CCWGG | 1 cut(s) | 447 |
| MvnI | CGCG | 1 cut(s) | 12 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 158, 236, 287, 471 |
| NarI | GGCGCC | 2 cut(s) | 330, 474 |
| NciI | CCSGG | 2 cut(s) | 193, 364 |
| NdeII | GATC | 1 cut(s) | 449 |
| NlaIII | CATG | 3 cut(s) | 274, 316, 394 |
| NlaIV | GGNNCC | 3 cut(s) | 41, 331, 475 |
| NmeAIII | GCCGAG | 1 cut(s) | 456 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| NspI | RCATGY | 1 cut(s) | 316 |
| OliI | CACNNNNGTG | 1 cut(s) | 422 |
| PaeR7I | CTCGAG | 1 cut(s) | 44 |
| PagI | TCATGA | 1 cut(s) | 270 |
| PciSI | GCTCTTC | 1 cut(s) | 203 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 51 |
| PfeI | GAWTC | 1 cut(s) | 130 |
| PflFI | GACNNNGTC | 1 cut(s) | 59 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 339 |
| PfoI | TCCNGGA | 1 cut(s) | 445 |
| PkrI | GCNGC | 8 cut(s) | 14, 215, 229, 283, 467, 486, 511, 514 |
| PleI | GAGTC | 1 cut(s) | 151 |
| PluTI | GGCGCC | 2 cut(s) | 333, 477 |
| PpsI | GAGTC | 1 cut(s) | 151 |
| PpuMI | RGGWCCY | 1 cut(s) | 40 |
| Psp5II | RGGWCCY | 1 cut(s) | 40 |
| Psp6I | CCWGG | 1 cut(s) | 445 |
| PspGI | CCWGG | 1 cut(s) | 445 |
| PspN4I | GGNNCC | 3 cut(s) | 41, 331, 475 |
| PspPI | GGNCC | 1 cut(s) | 40 |
| PspPPI | RGGWCCY | 1 cut(s) | 40 |
| PspXI | VCTCGAGB | 1 cut(s) | 44 |
| PsuI | RGATCY | 1 cut(s) | 449 |
| PsyI | GACNNNGTC | 1 cut(s) | 59 |
| RseI | CAYNNNNRTG | 1 cut(s) | 422 |
| SapI | GCTCTTC | 1 cut(s) | 203 |
| SaqAI | TTAA | 1 cut(s) | 243 |
| SatI | GCNGC | 8 cut(s) | 13, 214, 228, 282, 466, 485, 510, 513 |
| Sau3AI | GATC | 1 cut(s) | 449 |
| Sau96I | GGNCC | 1 cut(s) | 40 |
| SchI | GAGTC | 1 cut(s) | 152 |
| ScrFI | CCNGG | 3 cut(s) | 193, 364, 447 |
| SduI | GDGCHC | 1 cut(s) | 437 |
| SfaNI | GCATC | 2 cut(s) | 359, 417 |
| SfoI | GGCGCC | 2 cut(s) | 331, 475 |
| Sfr274I | CTCGAG | 1 cut(s) | 44 |
| SinI | GGWCC | 1 cut(s) | 40 |
| SlaI | CTCGAG | 1 cut(s) | 44 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 422 |
| SmlI | CTYRAG | 1 cut(s) | 44 |
| SmoI | CTYRAG | 1 cut(s) | 44 |
| Sse9I | AATT | 2 cut(s) | 304, 523 |
| SspDI | GGCGCC | 2 cut(s) | 329, 473 |
| SspMI | CTAG | 2 cut(s) | 71, 407 |
| StyD4I | CCNGG | 3 cut(s) | 191, 362, 445 |
| TaiI | ACGT | 1 cut(s) | 63 |
| TaqI | TCGA | 1 cut(s) | 45 |
| TasI | AATT | 2 cut(s) | 304, 523 |
| TauI | GCSGC | 5 cut(s) | 15, 216, 284, 487, 512 |
| TfiI | GAWTC | 1 cut(s) | 130 |
| Tru1I | TTAA | 1 cut(s) | 243 |
| Tru9I | TTAA | 1 cut(s) | 243 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| TseI | GCWGC | 3 cut(s) | 227, 465, 512 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 2 cut(s) | 379, 513 |
| Tth111I | GACNNNGTC | 1 cut(s) | 59 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 339 |
| VpaK11BI | GGWCC | 1 cut(s) | 40 |
| XceI | RCATGY | 1 cut(s) | 316 |
| XhoI | CTCGAG | 1 cut(s) | 44 |
| XspI | CTAG | 2 cut(s) | 71, 407 |