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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 544 |
| AccBSI | CCGCTC | 1 cut(s) | 131 |
| AccII | CGCG | 1 cut(s) | 325 |
| AciI | CCGC | 3 cut(s) | 129, 325, 513 |
| AclWI | GGATC | 1 cut(s) | 418 |
| AcoI | YGGCCR | 1 cut(s) | 16 |
| AcuI | CTGAAG | 1 cut(s) | 354 |
| AcyI | GRCGYC | 1 cut(s) | 444 |
| AdeI | CACNNNGTG | 1 cut(s) | 544 |
| AfaI | GTAC | 2 cut(s) | 203, 549 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 396, 544, 566 |
| AgsI | TTSAA | 1 cut(s) | 504 |
| AjnI | CCWGG | 1 cut(s) | 401 |
| AluBI | AGCT | 4 cut(s) | 52, 178, 259, 332 |
| AluI | AGCT | 4 cut(s) | 52, 178, 259, 332 |
| AlwI | GGATC | 1 cut(s) | 418 |
| AoxI | GGCC | 3 cut(s) | 16, 169, 435 |
| ApeKI | GCWGC | 2 cut(s) | 28, 52 |
| AspLEI | GCGC | 2 cut(s) | 157, 578 |
| AspS9I | GGNCC | 3 cut(s) | 169, 341, 399 |
| AsuC2I | CCSGG | 1 cut(s) | 20 |
| AsuHPI | GGTGA | 2 cut(s) | 286, 581 |
| AvaII | GGWCC | 2 cut(s) | 341, 399 |
| BbvCI | CCTCAGC | 1 cut(s) | 39 |
| BbvI | GCAGC | 2 cut(s) | 39, 40 |
| BccI | CCATC | 4 cut(s) | 398, 427, 479, 560 |
| BciT130I | CCWGG | 1 cut(s) | 403 |
| BclI | TGATCA | 2 cut(s) | 495, 526 |
| BcnI | CCSGG | 1 cut(s) | 20 |
| BfaI | CTAG | 3 cut(s) | 179, 375, 519 |
| BfmI | CTRYAG | 2 cut(s) | 159, 579 |
| BfoI | RGCGCY | 1 cut(s) | 158 |
| BisI | GCNGC | 3 cut(s) | 29, 53, 129 |
| BlsI | GCNGC | 3 cut(s) | 30, 54, 130 |
| Bme1390I | CCNGG | 2 cut(s) | 20, 403 |
| Bme18I | GGWCC | 2 cut(s) | 341, 399 |
| BmgT120I | GGNCC | 3 cut(s) | 169, 341, 399 |
| BmiI | GGNNCC | 1 cut(s) | 343 |
| BmrFI | CCNGG | 2 cut(s) | 20, 403 |
| BmsI | GCATC | 1 cut(s) | 546 |
| Bpu10I | CCTNAGC | 2 cut(s) | 39, 267 |
| BpuEI | CTTGAG | 1 cut(s) | 59 |
| BpuMI | CCSGG | 1 cut(s) | 20 |
| Bsa29I | ATCGAT | 1 cut(s) | 279 |
| BsaHI | GRCGYC | 1 cut(s) | 444 |
| BsaJI | CCNNGG | 2 cut(s) | 93, 402 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 396, 544, 566 |
| Bse118I | RCCGGY | 1 cut(s) | 559 |
| Bse1I | ACTGG | 1 cut(s) | 425 |
| BseBI | CCWGG | 1 cut(s) | 403 |
| BseCI | ATCGAT | 1 cut(s) | 279 |
| BseDI | CCNNGG | 2 cut(s) | 93, 402 |
| BseGI | GGATG | 5 cut(s) | 10, 28, 214, 390, 571 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 396, 544, 566 |
| BseMII | CTCAG | 2 cut(s) | 30, 428 |
| BseNI | ACTGG | 1 cut(s) | 425 |
| BseXI | GCAGC | 2 cut(s) | 39, 40 |
| BseYI | CCCAGC | 1 cut(s) | 354 |
| BsgI | GTGCAG | 1 cut(s) | 47 |
| Bsh1236I | CGCG | 1 cut(s) | 325 |
| BshFI | GGCC | 3 cut(s) | 18, 171, 437 |
| BshVI | ATCGAT | 1 cut(s) | 279 |
| BsiSI | CCGG | 2 cut(s) | 19, 560 |
| BslFI | GGGAC | 4 cut(s) | 327, 337, 502, 569 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 396, 544, 566 |
| BsmFI | GGGAC | 4 cut(s) | 327, 337, 502, 569 |
| BsmI | GAATGC | 1 cut(s) | 130 |
| BsnI | GGCC | 3 cut(s) | 18, 171, 437 |
| Bsp143I | GATC | 4 cut(s) | 276, 410, 495, 526 |
| BspACI | CCGC | 3 cut(s) | 129, 325, 513 |
| BspANI | GGCC | 3 cut(s) | 18, 171, 437 |
| BspCNI | CTCAG | 2 cut(s) | 31, 427 |
| BspDI | ATCGAT | 1 cut(s) | 279 |
| BspFNI | CGCG | 1 cut(s) | 325 |
| BspLI | GGNNCC | 1 cut(s) | 343 |
| BspPI | GGATC | 1 cut(s) | 418 |
| BsrBI | CCGCTC | 1 cut(s) | 131 |
| BsrFI | RCCGGY | 1 cut(s) | 559 |
| BsrI | ACTGG | 1 cut(s) | 425 |
| BssAI | RCCGGY | 1 cut(s) | 559 |
| BssECI | CCNNGG | 2 cut(s) | 93, 402 |
| BssMI | GATC | 4 cut(s) | 276, 410, 495, 526 |
| BssNI | GRCGYC | 1 cut(s) | 444 |
| BssT1I | CCWWGG | 1 cut(s) | 93 |
| Bst2UI | CCWGG | 1 cut(s) | 403 |
| Bst4CI | ACNGT | 1 cut(s) | 544 |
| Bst6I | CTCTTC | 4 cut(s) | 54, 95, 139, 192 |
| BstACI | GRCGYC | 1 cut(s) | 444 |
| BstC8I | GCNNGC | 1 cut(s) | 133 |
| BstDEI | CTNAG | 4 cut(s) | 39, 267, 414, 600 |
| BstF5I | GGATG | 5 cut(s) | 10, 28, 214, 390, 571 |
| BstFNI | CGCG | 1 cut(s) | 325 |
| BstH2I | RGCGCY | 1 cut(s) | 158 |
| BstHHI | GCGC | 2 cut(s) | 157, 578 |
| BstKTI | GATC | 4 cut(s) | 279, 413, 498, 529 |
| BstMBI | GATC | 4 cut(s) | 276, 410, 495, 526 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 44, 443, 452 |
| BstNI | CCWGG | 1 cut(s) | 403 |
| BstSCI | CCNGG | 2 cut(s) | 18, 401 |
| BstSFI | CTRYAG | 2 cut(s) | 159, 579 |
| BstUI | CGCG | 1 cut(s) | 325 |
| BstV1I | GCAGC | 2 cut(s) | 39, 40 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 485 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 279 |
| BsuRI | GGCC | 3 cut(s) | 18, 171, 437 |
| BsuTUI | ATCGAT | 1 cut(s) | 279 |
| BtgZI | GCGATG | 1 cut(s) | 396 |
| BtsCI | GGATG | 5 cut(s) | 10, 28, 214, 390, 571 |
| BtsIMutI | CAGTG | 2 cut(s) | 432, 549 |
| Cac8I | GCNNGC | 1 cut(s) | 133 |
| CfoI | GCGC | 2 cut(s) | 157, 578 |
| Cfr10I | RCCGGY | 1 cut(s) | 559 |
| Cfr13I | GGNCC | 3 cut(s) | 169, 341, 399 |
| ClaI | ATCGAT | 1 cut(s) | 279 |
| CseI | GACGC | 1 cut(s) | 452 |
| Csp6I | GTAC | 2 cut(s) | 202, 548 |
| CviAII | CATG | 2 cut(s) | 452, 479 |
| CviQI | GTAC | 2 cut(s) | 202, 548 |
| DdeI | CTNAG | 4 cut(s) | 39, 267, 414, 600 |
| DpnI | GATC | 4 cut(s) | 278, 412, 497, 528 |
| DpnII | GATC | 4 cut(s) | 276, 410, 495, 526 |
| DraIII | CACNNNGTG | 1 cut(s) | 544 |
| EaeI | YGGCCR | 1 cut(s) | 16 |
| Eam1104I | CTCTTC | 4 cut(s) | 54, 95, 139, 192 |
| EarI | CTCTTC | 4 cut(s) | 54, 95, 139, 192 |
| Eco130I | CCWWGG | 1 cut(s) | 93 |
| Eco47I | GGWCC | 2 cut(s) | 341, 399 |
| Eco57I | CTGAAG | 1 cut(s) | 354 |
| EcoRII | CCWGG | 1 cut(s) | 401 |
| EcoT14I | CCWWGG | 1 cut(s) | 93 |
| ErhI | CCWWGG | 1 cut(s) | 93 |
| FaeI | CATG | 2 cut(s) | 455, 482 |
| FaiI | YATR | 4 cut(s) | 230, 453, 464, 480 |
| FaqI | GGGAC | 4 cut(s) | 327, 337, 502, 569 |
| FatI | CATG | 2 cut(s) | 451, 478 |
| FbaI | TGATCA | 2 cut(s) | 495, 526 |
| Fnu4HI | GCNGC | 3 cut(s) | 29, 53, 129 |
| FokI | GGATG | 5 cut(s) | 17, 35, 221, 377, 578 |
| Fsp4HI | GCNGC | 3 cut(s) | 29, 53, 129 |
| FspBI | CTAG | 3 cut(s) | 179, 375, 519 |
| GlaI | GCGC | 2 cut(s) | 156, 577 |
| GluI | GCNGC | 3 cut(s) | 29, 53, 129 |
| GsaI | CCCAGC | 1 cut(s) | 358 |
| HaeII | RGCGCY | 1 cut(s) | 158 |
| HaeIII | GGCC | 3 cut(s) | 18, 171, 437 |
| HapII | CCGG | 2 cut(s) | 19, 560 |
| HgaI | GACGC | 1 cut(s) | 452 |
| HhaI | GCGC | 2 cut(s) | 157, 578 |
| Hin1I | GRCGYC | 1 cut(s) | 444 |
| Hin1II | CATG | 2 cut(s) | 455, 482 |
| Hin6I | GCGC | 2 cut(s) | 155, 576 |
| HinP1I | GCGC | 2 cut(s) | 155, 576 |
| HincII | GTYRAC | 1 cut(s) | 90 |
| HindII | GTYRAC | 1 cut(s) | 90 |
| HinfI | GANTC | 5 cut(s) | 316, 347, 386, 459, 596 |
| HpaII | CCGG | 2 cut(s) | 19, 560 |
| HphI | GGTGA | 2 cut(s) | 286, 581 |
| Hpy166II | GTNNAC | 1 cut(s) | 90 |
| Hpy188I | TCNGA | 4 cut(s) | 143, 442, 526, 531 |
| Hpy188III | TCNNGA | 2 cut(s) | 344, 375 |
| Hpy8I | GTNNAC | 1 cut(s) | 90 |
| Hpy99I | CGWCG | 1 cut(s) | 446 |
| HpyAV | CCTTC | 5 cut(s) | 185, 214, 283, 329, 401 |
| HpyCH4III | ACNGT | 1 cut(s) | 544 |
| HpyCH4V | TGCA | 2 cut(s) | 28, 55 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 44, 443, 452 |
| HpyF3I | CTNAG | 4 cut(s) | 39, 267, 414, 600 |
| Hsp92I | GRCGYC | 1 cut(s) | 444 |
| Hsp92II | CATG | 2 cut(s) | 455, 482 |
| HspAI | GCGC | 2 cut(s) | 155, 576 |
| Ksp22I | TGATCA | 2 cut(s) | 495, 526 |
| Kzo9I | GATC | 4 cut(s) | 276, 410, 495, 526 |
| LmnI | GCTCC | 1 cut(s) | 310 |
| LpnPI | CCDG | 8 cut(s) | 32, 92, 210, 368, 388, 415, 438, 573 |
| Lsp1109I | GCAGC | 2 cut(s) | 39, 40 |
| LweI | GCATC | 1 cut(s) | 546 |
| MaeI | CTAG | 3 cut(s) | 179, 375, 519 |
| MaeIII | GTNAC | 2 cut(s) | 427, 569 |
| MalI | GATC | 4 cut(s) | 278, 412, 497, 528 |
| MbiI | CCGCTC | 1 cut(s) | 131 |
| MboI | GATC | 4 cut(s) | 276, 410, 495, 526 |
| MboII | GAAGA | 5 cut(s) | 71, 112, 156, 200, 209 |
| MfeI | CAATTG | 2 cut(s) | 83, 419 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MluCI | AATT | 2 cut(s) | 83, 419 |
| MlyI | GAGTC | 3 cut(s) | 341, 395, 453 |
| MmeI | TCCRAC | 2 cut(s) | 418, 465 |
| MnlI | CCTC | 6 cut(s) | 34, 83, 96, 140, 176, 448 |
| MslI | CAYNNNNRTG | 1 cut(s) | 483 |
| MspA1I | CMGCKG | 1 cut(s) | 332 |
| MspI | CCGG | 2 cut(s) | 19, 560 |
| MspR9I | CCNGG | 2 cut(s) | 20, 403 |
| MunI | CAATTG | 2 cut(s) | 83, 419 |
| Mva1269I | GAATGC | 1 cut(s) | 130 |
| MvaI | CCWGG | 1 cut(s) | 403 |
| MvnI | CGCG | 1 cut(s) | 325 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 44, 443, 452 |
| NciI | CCSGG | 1 cut(s) | 20 |
| NdeII | GATC | 4 cut(s) | 276, 410, 495, 526 |
| NlaIII | CATG | 2 cut(s) | 455, 482 |
| NlaIV | GGNNCC | 1 cut(s) | 343 |
| NmeAIII | GCCGAG | 1 cut(s) | 197 |
| NmuCI | GTSAC | 2 cut(s) | 427, 569 |
| PctI | GAATGC | 1 cut(s) | 130 |
| PfeI | GAWTC | 1 cut(s) | 316 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 544 |
| PkrI | GCNGC | 3 cut(s) | 30, 54, 130 |
| PleI | GAGTC | 3 cut(s) | 341, 394, 453 |
| PpsI | GAGTC | 3 cut(s) | 341, 394, 453 |
| Psp6I | CCWGG | 1 cut(s) | 401 |
| PspFI | CCCAGC | 1 cut(s) | 354 |
| PspGI | CCWGG | 1 cut(s) | 401 |
| PspN4I | GGNNCC | 1 cut(s) | 343 |
| PspPI | GGNCC | 3 cut(s) | 169, 341, 399 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| PvuII | CAGCTG | 1 cut(s) | 332 |
| RsaI | GTAC | 2 cut(s) | 203, 549 |
| RsaNI | GTAC | 2 cut(s) | 202, 548 |
| RseI | CAYNNNNRTG | 1 cut(s) | 483 |
| SatI | GCNGC | 3 cut(s) | 29, 53, 129 |
| Sau3AI | GATC | 4 cut(s) | 276, 410, 495, 526 |
| Sau96I | GGNCC | 3 cut(s) | 169, 341, 399 |
| SchI | GAGTC | 3 cut(s) | 341, 395, 453 |
| ScrFI | CCNGG | 2 cut(s) | 20, 403 |
| SetI | ASST | 7 cut(s) | 45, 54, 151, 180, 261, 334, 340 |
| SfaNI | GCATC | 1 cut(s) | 546 |
| SfcI | CTRYAG | 2 cut(s) | 159, 579 |
| SinI | GGWCC | 2 cut(s) | 341, 399 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 483 |
| SmlI | CTYRAG | 1 cut(s) | 74 |
| SmoI | CTYRAG | 1 cut(s) | 74 |
| Sse9I | AATT | 2 cut(s) | 83, 419 |
| SsiI | CCGC | 3 cut(s) | 129, 325, 513 |
| SspMI | CTAG | 3 cut(s) | 179, 375, 519 |
| StyD4I | CCNGG | 2 cut(s) | 18, 401 |
| StyI | CCWWGG | 1 cut(s) | 93 |
| TaaI | ACNGT | 1 cut(s) | 544 |
| TaqI | TCGA | 3 cut(s) | 252, 279, 457 |
| TasI | AATT | 2 cut(s) | 83, 419 |
| TatI | WGTACW | 1 cut(s) | 201 |
| TauI | GCSGC | 1 cut(s) | 131 |
| TfiI | GAWTC | 1 cut(s) | 316 |
| TscAI | CASTG | 2 cut(s) | 432, 549 |
| TseFI | GTSAC | 2 cut(s) | 427, 569 |
| TseI | GCWGC | 2 cut(s) | 28, 52 |
| Tsp45I | GTSAC | 2 cut(s) | 427, 569 |
| TspDTI | ATGAA | 1 cut(s) | 440 |
| TspGWI | ACGGA | 1 cut(s) | 412 |
| TspRI | CASTG | 2 cut(s) | 432, 549 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 544 |
| VpaK11BI | GGWCC | 2 cut(s) | 341, 399 |
| XbaI | TCTAGA | 1 cut(s) | 374 |
| XspI | CTAG | 3 cut(s) | 179, 375, 519 |