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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 932 |
| Acc65I | GGTACC | 1 cut(s) | 1427 |
| AccB1I | GGYRCC | 5 cut(s) | 407, 864, 1184, 1220, 1427 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1230 |
| AccBSI | CCGCTC | 5 cut(s) | 649, 787, 862, 940, 1454 |
| AccI | GTMKAC | 2 cut(s) | 474, 1049 |
| AccII | CGCG | 4 cut(s) | 532, 903, 1107, 1392 |
| AclWI | GGATC | 1 cut(s) | 608 |
| AcoI | YGGCCR | 1 cut(s) | 690 |
| AcsI | RAATTY | 2 cut(s) | 231, 1383 |
| AcuI | CTGAAG | 1 cut(s) | 1010 |
| AcvI | CACGTG | 1 cut(s) | 598 |
| AcyI | GRCGYC | 4 cut(s) | 37, 439, 477, 865 |
| AfaI | GTAC | 1 cut(s) | 1429 |
| AgsI | TTSAA | 6 cut(s) | 25, 236, 769, 809, 1135, 1210 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 952 |
| AjnI | CCWGG | 7 cut(s) | 178, 303, 414, 518, 888, 956, 1479 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1333, 1365 |
| AluBI | AGCT | 8 cut(s) | 91, 275, 404, 793, 910, 994, 1057, 1094 |
| AluI | AGCT | 8 cut(s) | 91, 275, 404, 793, 910, 994, 1057, 1094 |
| Alw21I | GWGCWC | 1 cut(s) | 1309 |
| Alw26I | GTCTC | 2 cut(s) | 827, 848 |
| AlwI | GGATC | 1 cut(s) | 608 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 304, 706, 1115 |
| Ama87I | CYCGRG | 1 cut(s) | 1416 |
| AoxI | GGCC | 7 cut(s) | 189, 213, 317, 383, 392, 563, 690 |
| ApaI | GGGCCC | 1 cut(s) | 321 |
| ApeKI | GCWGC | 8 cut(s) | 48, 272, 590, 790, 991, 1115, 1118, 1190 |
| ApoI | RAATTY | 2 cut(s) | 231, 1383 |
| Asp718I | GGTACC | 1 cut(s) | 1427 |
| AspLEI | GCGC | 3 cut(s) | 867, 1109, 1394 |
| AspS9I | GGNCC | 9 cut(s) | 56, 220, 317, 318, 383, 563, 675, 812, 1461 |
| AsuC2I | CCSGG | 3 cut(s) | 929, 1084, 1145 |
| AsuHPI | GGTGA | 3 cut(s) | 115, 1343, 1520 |
| AvaI | CYCGRG | 1 cut(s) | 1416 |
| AvaII | GGWCC | 5 cut(s) | 56, 220, 675, 812, 1461 |
| BaeGI | GKGCMC | 2 cut(s) | 321, 496 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1419, 1452 |
| BanI | GGYRCC | 5 cut(s) | 407, 864, 1184, 1220, 1427 |
| BanII | GRGCYC | 3 cut(s) | 321, 354, 1448 |
| BauI | CACGAG | 1 cut(s) | 1455 |
| BbrPI | CACGTG | 1 cut(s) | 598 |
| Bbv12I | GWGCWC | 1 cut(s) | 1309 |
| BbvI | GCAGC | 8 cut(s) | 35, 284, 577, 802, 1003, 1102, 1130, 1177 |
| BccI | CCATC | 5 cut(s) | 645, 665, 841, 1159, 1499 |
| BceAI | ACGGC | 5 cut(s) | 245, 464, 677, 705, 1106 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 9, 43 |
| BciT130I | CCWGG | 7 cut(s) | 180, 305, 416, 520, 890, 958, 1481 |
| BcnI | CCSGG | 3 cut(s) | 929, 1084, 1145 |
| BcoDI | GTCTC | 2 cut(s) | 827, 848 |
| BfmI | CTRYAG | 2 cut(s) | 983, 1116 |
| BfoI | RGCGCY | 1 cut(s) | 868 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 382, 391 |
| BlpI | GCTNAGC | 1 cut(s) | 276 |
| Bme18I | GGWCC | 5 cut(s) | 56, 220, 675, 812, 1461 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 952 |
| BmeT110I | CYCGRG | 1 cut(s) | 1416 |
| BmgT120I | GGNCC | 9 cut(s) | 56, 220, 317, 318, 383, 563, 675, 812, 1461 |
| BmrI | ACTGGG | 1 cut(s) | 1240 |
| BmuI | ACTGGG | 1 cut(s) | 1240 |
| BoxI | GACNNNNGTC | 1 cut(s) | 287 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 617, 649 |
| Bpu10I | CCTNAGC | 2 cut(s) | 794, 1312 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 276 |
| BpuEI | CTTGAG | 2 cut(s) | 363, 1016 |
| BpuMI | CCSGG | 3 cut(s) | 929, 1084, 1145 |
| BsaAI | YACGTR | 1 cut(s) | 598 |
| BsaHI | GRCGYC | 4 cut(s) | 37, 439, 477, 865 |
| BsaI | GGTCTC | 1 cut(s) | 848 |
| BsaWI | WCCGGW | 1 cut(s) | 96 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 239, 269 |
| Bse118I | RCCGGY | 1 cut(s) | 125 |
| Bse1I | ACTGG | 2 cut(s) | 536, 1235 |
| Bse3DI | GCAATG | 1 cut(s) | 972 |
| BseBI | CCWGG | 7 cut(s) | 180, 305, 416, 520, 890, 958, 1481 |
| BseGI | GGATG | 6 cut(s) | 676, 901, 937, 1351, 1510, 1519 |
| BseMI | GCAATG | 1 cut(s) | 972 |
| BseMII | CTCAG | 5 cut(s) | 290, 1086, 1290, 1326, 1367 |
| BseNI | ACTGG | 2 cut(s) | 536, 1235 |
| BseRI | GAGGAG | 3 cut(s) | 815, 1114, 1486 |
| BseSI | GKGCMC | 2 cut(s) | 321, 496 |
| BseX3I | CGGCCG | 1 cut(s) | 690 |
| BseXI | GCAGC | 8 cut(s) | 35, 284, 577, 802, 1003, 1102, 1130, 1177 |
| BseYI | CCCAGC | 2 cut(s) | 129, 1484 |
| Bsh1236I | CGCG | 4 cut(s) | 532, 903, 1107, 1392 |
| Bsh1285I | CGRYCG | 1 cut(s) | 693 |
| BshFI | GGCC | 7 cut(s) | 191, 215, 319, 385, 394, 565, 692 |
| BshNI | GGYRCC | 5 cut(s) | 407, 864, 1184, 1220, 1427 |
| BsiEI | CGRYCG | 1 cut(s) | 693 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1309 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1416 |
| BsiSI | CCGG | 5 cut(s) | 97, 126, 928, 1084, 1145 |
| BslFI | GGGAC | 4 cut(s) | 688, 688, 798, 1126 |
| BsmAI | GTCTC | 2 cut(s) | 827, 848 |
| BsmFI | GGGAC | 4 cut(s) | 688, 688, 798, 1126 |
| BsnI | GGCC | 7 cut(s) | 191, 215, 319, 385, 394, 565, 692 |
| Bso31I | GGTCTC | 1 cut(s) | 848 |
| BsoBI | CYCGRG | 1 cut(s) | 1416 |
| Bsp120I | GGGCCC | 1 cut(s) | 317 |
| Bsp1286I | GDGCHC | 5 cut(s) | 321, 354, 496, 1309, 1448 |
| Bsp143I | GATC | 2 cut(s) | 613, 1465 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 276 |
| Bsp19I | CCATGG | 1 cut(s) | 216 |
| BspANI | GGCC | 7 cut(s) | 191, 215, 319, 385, 394, 565, 692 |
| BspCNI | CTCAG | 5 cut(s) | 289, 1087, 1291, 1325, 1366 |
| BspFNI | CGCG | 4 cut(s) | 532, 903, 1107, 1392 |
| BspMAI | CTGCAG | 1 cut(s) | 1120 |
| BspPI | GGATC | 1 cut(s) | 608 |
| BspT107I | GGYRCC | 5 cut(s) | 407, 864, 1184, 1220, 1427 |
| BspTNI | GGTCTC | 1 cut(s) | 848 |
| BsrBI | CCGCTC | 5 cut(s) | 649, 787, 862, 940, 1454 |
| BsrDI | GCAATG | 1 cut(s) | 972 |
| BsrFI | RCCGGY | 1 cut(s) | 125 |
| BsrI | ACTGG | 2 cut(s) | 536, 1235 |
| BssAI | RCCGGY | 1 cut(s) | 125 |
| BssMI | GATC | 2 cut(s) | 613, 1465 |
| BssNI | GRCGYC | 4 cut(s) | 37, 439, 477, 865 |
| BssSI | CACGAG | 1 cut(s) | 1455 |
| BssT1I | CCWWGG | 3 cut(s) | 216, 555, 873 |
| Bst2BI | CACGAG | 1 cut(s) | 1455 |
| Bst2UI | CCWGG | 7 cut(s) | 180, 305, 416, 520, 890, 958, 1481 |
| Bst4CI | ACNGT | 3 cut(s) | 286, 679, 1500 |
| Bst6I | CTCTTC | 1 cut(s) | 428 |
| BstACI | GRCGYC | 4 cut(s) | 37, 439, 477, 865 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1115 |
| BstBAI | YACGTR | 1 cut(s) | 598 |
| BstC8I | GCNNGC | 7 cut(s) | 162, 496, 500, 908, 1158, 1276, 1309 |
| BstDEI | CTNAG | 6 cut(s) | 276, 794, 1095, 1299, 1312, 1353 |
| BstDSI | CCRYGG | 3 cut(s) | 216, 901, 1122 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 340, 872, 983, 1166 |
| BstF5I | GGATG | 6 cut(s) | 676, 901, 937, 1351, 1510, 1519 |
| BstFNI | CGCG | 4 cut(s) | 532, 903, 1107, 1392 |
| BstH2I | RGCGCY | 1 cut(s) | 868 |
| BstHHI | GCGC | 3 cut(s) | 867, 1109, 1394 |
| BstKTI | GATC | 2 cut(s) | 616, 1468 |
| BstMAI | GTCTC | 2 cut(s) | 827, 848 |
| BstMBI | GATC | 2 cut(s) | 613, 1465 |
| BstMCI | CGRYCG | 1 cut(s) | 693 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 382, 391, 988, 1115, 1178, 1187 |
| BstNI | CCWGG | 7 cut(s) | 180, 305, 416, 520, 890, 958, 1481 |
| BstNSI | RCATGY | 1 cut(s) | 164 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 287 |
| BstSFI | CTRYAG | 2 cut(s) | 983, 1116 |
| BstSLI | GKGCMC | 2 cut(s) | 321, 496 |
| BstUI | CGCG | 4 cut(s) | 532, 903, 1107, 1392 |
| BstV1I | GCAGC | 8 cut(s) | 35, 284, 577, 802, 1003, 1102, 1130, 1177 |
| BstZI | CGGCCG | 1 cut(s) | 690 |
| BsuRI | GGCC | 7 cut(s) | 191, 215, 319, 385, 394, 565, 692 |
| BtgI | CCRYGG | 3 cut(s) | 216, 901, 1122 |
| BtsCI | GGATG | 6 cut(s) | 676, 901, 937, 1351, 1510, 1519 |
| BtsI | GCAGTG | 2 cut(s) | 1324, 1521 |
| BtsIMutI | CAGTG | 2 cut(s) | 1324, 1521 |
| Cac8I | GCNNGC | 7 cut(s) | 162, 496, 500, 908, 1158, 1276, 1309 |
| CaiI | CAGNNNCTG | 3 cut(s) | 304, 706, 1115 |
| CfoI | GCGC | 3 cut(s) | 867, 1109, 1394 |
| Cfr10I | RCCGGY | 1 cut(s) | 125 |
| Cfr13I | GGNCC | 9 cut(s) | 56, 220, 317, 318, 383, 563, 675, 812, 1461 |
| Cfr42I | CCGCGG | 1 cut(s) | 904 |
| CseI | GACGC | 5 cut(s) | 26, 166, 428, 485, 1325 |
| CsiI | ACCWGGT | 1 cut(s) | 888 |
| Csp6I | GTAC | 1 cut(s) | 1428 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1263, 1298 |
| CviAII | CATG | 6 cut(s) | 161, 217, 746, 757, 779, 1402 |
| CviQI | GTAC | 1 cut(s) | 1428 |
| DdeI | CTNAG | 6 cut(s) | 276, 794, 1095, 1299, 1312, 1353 |
| DinI | GGCGCC | 1 cut(s) | 866 |
| DpnI | GATC | 2 cut(s) | 615, 1467 |
| DpnII | GATC | 2 cut(s) | 613, 1465 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 932 |
| DriI | GACNNNNNGTC | 1 cut(s) | 952 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 932 |
| EaeI | YGGCCR | 1 cut(s) | 690 |
| EagI | CGGCCG | 1 cut(s) | 690 |
| Eam1104I | CTCTTC | 1 cut(s) | 428 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 952 |
| EarI | CTCTTC | 1 cut(s) | 428 |
| EciI | GGCGGA | 1 cut(s) | 83 |
| EclXI | CGGCCG | 1 cut(s) | 690 |
| Eco130I | CCWWGG | 3 cut(s) | 216, 555, 873 |
| Eco147I | AGGCCT | 1 cut(s) | 394 |
| Eco24I | GRGCYC | 3 cut(s) | 321, 354, 1448 |
| Eco31I | GGTCTC | 1 cut(s) | 848 |
| Eco32I | GATATC | 1 cut(s) | 1021 |
| Eco47I | GGWCC | 5 cut(s) | 56, 220, 675, 812, 1461 |
| Eco52I | CGGCCG | 1 cut(s) | 690 |
| Eco57I | CTGAAG | 1 cut(s) | 1010 |
| Eco72I | CACGTG | 1 cut(s) | 598 |
| Eco88I | CYCGRG | 1 cut(s) | 1416 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 340, 872, 983, 1166 |
| EcoO109I | RGGNCCY | 3 cut(s) | 317, 318, 812 |
| EcoRII | CCWGG | 7 cut(s) | 178, 303, 414, 518, 888, 956, 1479 |
| EcoRV | GATATC | 1 cut(s) | 1021 |
| EcoT14I | CCWWGG | 3 cut(s) | 216, 555, 873 |
| EcoT38I | GRGCYC | 3 cut(s) | 321, 354, 1448 |
| EgeI | GGCGCC | 1 cut(s) | 866 |
| EheI | GGCGCC | 1 cut(s) | 866 |
| ErhI | CCWWGG | 3 cut(s) | 216, 555, 873 |
| FaeI | CATG | 6 cut(s) | 164, 220, 749, 760, 782, 1405 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 899, 931 |
| FaqI | GGGAC | 4 cut(s) | 688, 688, 798, 1126 |
| FatI | CATG | 6 cut(s) | 160, 216, 745, 756, 778, 1401 |
| FauI | CCCGC | 2 cut(s) | 1005, 1023 |
| FblI | GTMKAC | 2 cut(s) | 474, 1049 |
| FokI | GGATG | 6 cut(s) | 683, 908, 944, 1358, 1517, 1526 |
| FriOI | GRGCYC | 3 cut(s) | 321, 354, 1448 |
| GlaI | GCGC | 3 cut(s) | 866, 1108, 1393 |
| GsaI | CCCAGC | 2 cut(s) | 133, 1488 |
| HaeII | RGCGCY | 1 cut(s) | 868 |
| HaeIII | GGCC | 7 cut(s) | 191, 215, 319, 385, 394, 565, 692 |
| HapII | CCGG | 5 cut(s) | 97, 126, 928, 1084, 1145 |
| HgaI | GACGC | 5 cut(s) | 26, 166, 428, 485, 1325 |
| HhaI | GCGC | 3 cut(s) | 867, 1109, 1394 |
| Hin1I | GRCGYC | 4 cut(s) | 37, 439, 477, 865 |
| Hin1II | CATG | 6 cut(s) | 164, 220, 749, 760, 782, 1405 |
| Hin6I | GCGC | 3 cut(s) | 865, 1107, 1392 |
| HinP1I | GCGC | 3 cut(s) | 865, 1107, 1392 |
| HincII | GTYRAC | 2 cut(s) | 475, 525 |
| HindII | GTYRAC | 2 cut(s) | 475, 525 |
| HinfI | GANTC | 5 cut(s) | 170, 581, 769, 1349, 1360 |
| HpaII | CCGG | 5 cut(s) | 97, 126, 928, 1084, 1145 |
| HphI | GGTGA | 3 cut(s) | 115, 1343, 1520 |
| Hpy166II | GTNNAC | 3 cut(s) | 475, 525, 1050 |
| Hpy188I | TCNGA | 6 cut(s) | 60, 401, 444, 1381, 1465, 1470 |
| Hpy188III | TCNNGA | 3 cut(s) | 107, 607, 617 |
| Hpy8I | GTNNAC | 3 cut(s) | 475, 525, 1050 |
| Hpy99I | CGWCG | 3 cut(s) | 476, 479, 1255 |
| HpyAV | CCTTC | 8 cut(s) | 47, 113, 122, 803, 1034, 1171, 1210, 1278 |
| HpyCH4III | ACNGT | 3 cut(s) | 286, 679, 1500 |
| HpyCH4IV | ACGT | 1 cut(s) | 597 |
| HpyCH4V | TGCA | 5 cut(s) | 551, 719, 745, 1118, 1274 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 382, 391, 988, 1115, 1178, 1187 |
| HpyF3I | CTNAG | 6 cut(s) | 276, 794, 1095, 1299, 1312, 1353 |
| HpySE526I | ACGT | 1 cut(s) | 597 |
| Hsp92I | GRCGYC | 4 cut(s) | 37, 439, 477, 865 |
| Hsp92II | CATG | 6 cut(s) | 164, 220, 749, 760, 782, 1405 |
| HspAI | GCGC | 3 cut(s) | 865, 1107, 1392 |
| KasI | GGCGCC | 1 cut(s) | 864 |
| KpnI | GGTACC | 1 cut(s) | 1431 |
| KspI | CCGCGG | 1 cut(s) | 904 |
| Kzo9I | GATC | 2 cut(s) | 613, 1465 |
| LmnI | GCTCC | 9 cut(s) | 349, 401, 964, 988, 1054, 1101, 1291, 1473, 1531 |
| Lsp1109I | GCAGC | 8 cut(s) | 35, 284, 577, 802, 1003, 1102, 1130, 1177 |
| MabI | ACCWGGT | 1 cut(s) | 888 |
| MaeII | ACGT | 1 cut(s) | 597 |
| MaeIII | GTNAC | 3 cut(s) | 538, 884, 1435 |
| MalI | GATC | 2 cut(s) | 615, 1467 |
| MbiI | CCGCTC | 5 cut(s) | 649, 787, 862, 940, 1454 |
| MboI | GATC | 2 cut(s) | 613, 1465 |
| MboII | GAAGA | 3 cut(s) | 445, 476, 523 |
| MfeI | CAATTG | 1 cut(s) | 486 |
| MhlI | GDGCHC | 5 cut(s) | 321, 354, 496, 1309, 1448 |
| MluCI | AATT | 5 cut(s) | 231, 486, 1064, 1195, 1383 |
| Mly113I | GGCGCC | 1 cut(s) | 865 |
| MlyI | GAGTC | 2 cut(s) | 575, 1354 |
| MmeI | TCCRAC | 6 cut(s) | 83, 379, 718, 942, 1364, 1482 |
| MseI | TTAA | 2 cut(s) | 14, 363 |
| MslI | CAYNNNNRTG | 1 cut(s) | 642 |
| MspA1I | CMGCKG | 4 cut(s) | 903, 1030, 1190, 1357 |
| MspI | CCGG | 5 cut(s) | 97, 126, 928, 1084, 1145 |
| MunI | CAATTG | 1 cut(s) | 486 |
| MvaI | CCWGG | 7 cut(s) | 180, 305, 416, 520, 890, 958, 1481 |
| MvnI | CGCG | 4 cut(s) | 532, 903, 1107, 1392 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 382, 391, 988, 1115, 1178, 1187 |
| NarI | GGCGCC | 1 cut(s) | 865 |
| NciI | CCSGG | 3 cut(s) | 929, 1084, 1145 |
| NcoI | CCATGG | 1 cut(s) | 216 |
| NdeII | GATC | 2 cut(s) | 613, 1465 |
| NlaIII | CATG | 6 cut(s) | 164, 220, 749, 760, 782, 1405 |
| NmeAIII | GCCGAG | 2 cut(s) | 366, 414 |
| NmuCI | GTSAC | 2 cut(s) | 884, 1435 |
| NspI | RCATGY | 1 cut(s) | 164 |
| PaeI | GCATGC | 1 cut(s) | 164 |
| PasI | CCCWGGG | 1 cut(s) | 415 |
| PceI | AGGCCT | 1 cut(s) | 394 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 477, 594 |
| PfeI | GAWTC | 3 cut(s) | 170, 769, 1349 |
| PflFI | GACNNNGTC | 1 cut(s) | 1232 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1230 |
| PleI | GAGTC | 2 cut(s) | 575, 1354 |
| PluTI | GGCGCC | 1 cut(s) | 868 |
| PmaCI | CACGTG | 1 cut(s) | 598 |
| PmlI | CACGTG | 1 cut(s) | 598 |
| PpsI | GAGTC | 2 cut(s) | 575, 1354 |
| Ppu21I | YACGTR | 1 cut(s) | 598 |
| PpuMI | RGGWCCY | 1 cut(s) | 812 |
| PshAI | GACNNNNGTC | 1 cut(s) | 287 |
| Psp5II | RGGWCCY | 1 cut(s) | 812 |
| Psp6I | CCWGG | 7 cut(s) | 178, 303, 414, 518, 888, 956, 1479 |
| PspCI | CACGTG | 1 cut(s) | 598 |
| PspFI | CCCAGC | 2 cut(s) | 129, 1484 |
| PspGI | CCWGG | 7 cut(s) | 178, 303, 414, 518, 888, 956, 1479 |
| PspOMI | GGGCCC | 1 cut(s) | 317 |
| PspPI | GGNCC | 9 cut(s) | 56, 220, 317, 318, 383, 563, 675, 812, 1461 |
| PspPPI | RGGWCCY | 1 cut(s) | 812 |
| PstI | CTGCAG | 1 cut(s) | 1120 |
| PstNI | CAGNNNCTG | 3 cut(s) | 304, 706, 1115 |
| PsyI | GACNNNGTC | 1 cut(s) | 1232 |
| RsaI | GTAC | 1 cut(s) | 1429 |
| RsaNI | GTAC | 1 cut(s) | 1428 |
| RseI | CAYNNNNRTG | 1 cut(s) | 642 |
| SacII | CCGCGG | 1 cut(s) | 904 |
| SalI | GTCGAC | 1 cut(s) | 473 |
| SaqAI | TTAA | 2 cut(s) | 14, 363 |
| Sau3AI | GATC | 2 cut(s) | 613, 1465 |
| Sau96I | GGNCC | 9 cut(s) | 56, 220, 317, 318, 383, 563, 675, 812, 1461 |
| SchI | GAGTC | 2 cut(s) | 575, 1354 |
| SduI | GDGCHC | 5 cut(s) | 321, 354, 496, 1309, 1448 |
| SexAI | ACCWGGT | 1 cut(s) | 888 |
| SfcI | CTRYAG | 2 cut(s) | 983, 1116 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 391 |
| SfoI | GGCGCC | 1 cut(s) | 866 |
| Sfr303I | CCGCGG | 1 cut(s) | 904 |
| SgrBI | CCGCGG | 1 cut(s) | 904 |
| SgrDI | CGTCGACG | 1 cut(s) | 473 |
| SinI | GGWCC | 5 cut(s) | 56, 220, 675, 812, 1461 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 642 |
| SmlI | CTYRAG | 2 cut(s) | 378, 995 |
| SmoI | CTYRAG | 2 cut(s) | 378, 995 |
| SphI | GCATGC | 1 cut(s) | 164 |
| Sse9I | AATT | 5 cut(s) | 231, 486, 1064, 1195, 1383 |
| SseBI | AGGCCT | 1 cut(s) | 394 |
| SspDI | GGCGCC | 1 cut(s) | 864 |
| StuI | AGGCCT | 1 cut(s) | 394 |
| StyI | CCWWGG | 3 cut(s) | 216, 555, 873 |
| TaaI | ACNGT | 3 cut(s) | 286, 679, 1500 |
| TaiI | ACGT | 1 cut(s) | 600 |
| TaqI | TCGA | 5 cut(s) | 144, 453, 474, 936, 1442 |
| TaqII | GACCGA | 2 cut(s) | 872, 963 |
| TasI | AATT | 5 cut(s) | 231, 486, 1064, 1195, 1383 |
| TfiI | GAWTC | 3 cut(s) | 170, 769, 1349 |
| Tru1I | TTAA | 2 cut(s) | 14, 363 |
| Tru9I | TTAA | 2 cut(s) | 14, 363 |
| TscAI | CASTG | 2 cut(s) | 1324, 1528 |
| TseFI | GTSAC | 2 cut(s) | 884, 1435 |
| TseI | GCWGC | 8 cut(s) | 48, 272, 590, 790, 991, 1115, 1118, 1190 |
| Tsp45I | GTSAC | 2 cut(s) | 884, 1435 |
| TspDTI | ATGAA | 2 cut(s) | 745, 1390 |
| TspGWI | ACGGA | 2 cut(s) | 1067, 1358 |
| TspRI | CASTG | 2 cut(s) | 1324, 1528 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1232 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1230 |
| VpaK11BI | GGWCC | 5 cut(s) | 56, 220, 675, 812, 1461 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 340, 872, 983, 1166 |
| XapI | RAATTY | 2 cut(s) | 231, 1383 |
| XceI | RCATGY | 1 cut(s) | 164 |
| XmiI | GTMKAC | 2 cut(s) | 474, 1049 |