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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 627 |
| Acc65I | GGTACC | 1 cut(s) | 298 |
| AccB1I | GGYRCC | 1 cut(s) | 298 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1254 |
| AccBSI | CCGCTC | 1 cut(s) | 327 |
| AccI | GTMKAC | 2 cut(s) | 403, 813 |
| AccII | CGCG | 5 cut(s) | 182, 799, 950, 1373, 1695 |
| AccIII | TCCGGA | 1 cut(s) | 1003 |
| AclWI | GGATC | 5 cut(s) | 66, 686, 995, 1008, 1645 |
| AcoI | YGGCCR | 4 cut(s) | 3, 140, 332, 612 |
| AcsI | RAATTY | 1 cut(s) | 9 |
| AcuI | CTGAAG | 3 cut(s) | 1040, 1130, 1581 |
| AcyI | GRCGYC | 1 cut(s) | 427 |
| AfaI | GTAC | 4 cut(s) | 300, 518, 528, 1596 |
| AfeI | AGCGCT | 1 cut(s) | 935 |
| AflII | CTTAAG | 1 cut(s) | 1586 |
| AgsI | TTSAA | 2 cut(s) | 448, 1414 |
| AjiI | CACGTC | 1 cut(s) | 88 |
| AjnI | CCWGG | 4 cut(s) | 429, 700, 996, 1274 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1370, 1402 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 761, 793 |
| Alw21I | GWGCWC | 1 cut(s) | 222 |
| Alw26I | GTCTC | 3 cut(s) | 193, 238, 1669 |
| Alw44I | GTGCAC | 1 cut(s) | 218 |
| AlwI | GGATC | 5 cut(s) | 66, 686, 995, 1008, 1645 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1153, 1400 |
| Ama87I | CYCGRG | 1 cut(s) | 455 |
| Aor13HI | TCCGGA | 1 cut(s) | 1003 |
| Aor51HI | AGCGCT | 1 cut(s) | 935 |
| AoxI | GGCC | 7 cut(s) | 3, 140, 332, 612, 751, 994, 1407 |
| ApaLI | GTGCAC | 1 cut(s) | 218 |
| ApeKI | GCWGC | 7 cut(s) | 952, 1037, 1069, 1318, 1364, 1582, 1682 |
| ApoI | RAATTY | 1 cut(s) | 9 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 458, 490 |
| Asp718I | GGTACC | 1 cut(s) | 298 |
| AspLEI | GCGC | 6 cut(s) | 394, 645, 799, 936, 952, 1191 |
| AspS9I | GGNCC | 1 cut(s) | 1568 |
| AsuC2I | CCSGG | 5 cut(s) | 59, 193, 380, 456, 457 |
| AsuHPI | GGTGA | 9 cut(s) | 27, 394, 445, 523, 679, 1027, 1531, 1622, 1643 |
| AsuNHI | GCTAGC | 1 cut(s) | 1129 |
| AvaI | CYCGRG | 1 cut(s) | 455 |
| AvaII | GGWCC | 1 cut(s) | 1568 |
| BaeGI | GKGCMC | 1 cut(s) | 222 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 999, 1032 |
| BalI | TGGCCA | 1 cut(s) | 334 |
| BamHI | GGATCC | 1 cut(s) | 1000 |
| BanI | GGYRCC | 1 cut(s) | 298 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 435, 467 |
| BauI | CACGAG | 1 cut(s) | 361 |
| BbsI | GAAGAC | 1 cut(s) | 809 |
| Bbv12I | GWGCWC | 1 cut(s) | 222 |
| BbvI | GCAGC | 7 cut(s) | 939, 1024, 1056, 1330, 1351, 1594, 1669 |
| BccI | CCATC | 5 cut(s) | 316, 320, 1231, 1256, 1288 |
| BceAI | ACGGC | 5 cut(s) | 108, 163, 379, 1485, 1737 |
| BciT130I | CCWGG | 4 cut(s) | 431, 702, 998, 1276 |
| BciVI | GTATCC | 1 cut(s) | 1000 |
| BcnI | CCSGG | 5 cut(s) | 59, 193, 380, 456, 457 |
| BcoDI | GTCTC | 3 cut(s) | 193, 238, 1669 |
| BfaI | CTAG | 4 cut(s) | 681, 755, 1130, 1289 |
| BfmI | CTRYAG | 1 cut(s) | 987 |
| BfoI | RGCGCY | 3 cut(s) | 395, 937, 1192 |
| BfrI | CTTAAG | 1 cut(s) | 1586 |
| BfuAI | ACCTGC | 1 cut(s) | 627 |
| BfuI | GTATCC | 1 cut(s) | 1000 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1280 |
| Bme1390I | CCNGG | 9 cut(s) | 59, 193, 380, 431, 456, 457, 702, 998, 1276 |
| Bme18I | GGWCC | 1 cut(s) | 1568 |
| BmeT110I | CYCGRG | 1 cut(s) | 455 |
| BmgBI | CACGTC | 1 cut(s) | 88 |
| BmgT120I | GGNCC | 1 cut(s) | 1568 |
| BmiI | GGNNCC | 4 cut(s) | 197, 300, 1002, 1570 |
| BmrFI | CCNGG | 9 cut(s) | 59, 193, 380, 431, 456, 457, 702, 998, 1276 |
| BmrI | ACTGGG | 1 cut(s) | 1519 |
| BmsI | GCATC | 7 cut(s) | 159, 426, 855, 1024, 1159, 1213, 1660 |
| BmtI | GCTAGC | 1 cut(s) | 1133 |
| BmuI | ACTGGG | 1 cut(s) | 1519 |
| BoxI | GACNNNNGTC | 1 cut(s) | 809 |
| BpiI | GAAGAC | 1 cut(s) | 809 |
| BpmI | CTGGAG | 1 cut(s) | 788 |
| BpuMI | CCSGG | 5 cut(s) | 59, 193, 380, 456, 457 |
| Bsa29I | ATCGAT | 1 cut(s) | 1251 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1298 |
| BsaHI | GRCGYC | 1 cut(s) | 427 |
| BsaI | GGTCTC | 2 cut(s) | 238, 1669 |
| BsaJI | CCNNGG | 9 cut(s) | 455, 456, 547, 609, 615, 975, 1011, 1275, 1371 |
| BsaWI | WCCGGW | 2 cut(s) | 157, 1003 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 653, 683, 761, 791 |
| Bse118I | RCCGGY | 2 cut(s) | 508, 1651 |
| Bse1I | ACTGG | 1 cut(s) | 1514 |
| Bse3DI | GCAATG | 1 cut(s) | 1361 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1298 |
| BseAI | TCCGGA | 1 cut(s) | 1003 |
| BseBI | CCWGG | 4 cut(s) | 431, 702, 998, 1276 |
| BseCI | ATCGAT | 1 cut(s) | 1251 |
| BseDI | CCNNGG | 9 cut(s) | 455, 456, 547, 609, 615, 975, 1011, 1275, 1371 |
| BseGI | GGATG | 4 cut(s) | 308, 591, 1228, 1264 |
| BseJI | GATNNNNATC | 1 cut(s) | 1298 |
| BseMI | GCAATG | 1 cut(s) | 1361 |
| BseMII | CTCAG | 1 cut(s) | 473 |
| BseNI | ACTGG | 1 cut(s) | 1514 |
| BseRI | GAGGAG | 7 cut(s) | 42, 337, 379, 1100, 1193, 1220, 1567 |
| BseSI | GKGCMC | 1 cut(s) | 222 |
| BseXI | GCAGC | 7 cut(s) | 939, 1024, 1056, 1330, 1351, 1594, 1669 |
| BsgI | GTGCAG | 1 cut(s) | 608 |
| Bsh1236I | CGCG | 5 cut(s) | 182, 799, 950, 1373, 1695 |
| Bsh1285I | CGRYCG | 3 cut(s) | 136, 162, 609 |
| BshFI | GGCC | 7 cut(s) | 5, 142, 334, 614, 753, 996, 1409 |
| BshNI | GGYRCC | 1 cut(s) | 298 |
| BshVI | ATCGAT | 1 cut(s) | 1251 |
| BsiEI | CGRYCG | 3 cut(s) | 136, 162, 609 |
| BsiHKAI | GWGCWC | 1 cut(s) | 222 |
| BsiHKCI | CYCGRG | 1 cut(s) | 455 |
| BsiSI | CCGG | 9 cut(s) | 58, 143, 158, 192, 380, 456, 509, 1004, 1652 |
| BslFI | GGGAC | 3 cut(s) | 438, 1526, 1717 |
| BsmAI | GTCTC | 3 cut(s) | 193, 238, 1669 |
| BsmFI | GGGAC | 3 cut(s) | 438, 1526, 1717 |
| BsmI | GAATGC | 2 cut(s) | 577, 799 |
| BsnI | GGCC | 7 cut(s) | 5, 142, 334, 614, 753, 996, 1409 |
| Bso31I | GGTCTC | 2 cut(s) | 238, 1669 |
| BsoBI | CYCGRG | 1 cut(s) | 455 |
| Bsp1286I | GDGCHC | 1 cut(s) | 222 |
| Bsp13I | TCCGGA | 1 cut(s) | 1003 |
| Bsp1407I | TGTACA | 2 cut(s) | 526, 1594 |
| Bsp143I | GATC | 8 cut(s) | 71, 96, 133, 691, 926, 1000, 1299, 1637 |
| Bsp68I | TCGCGA | 1 cut(s) | 1695 |
| BspANI | GGCC | 7 cut(s) | 5, 142, 334, 614, 753, 996, 1409 |
| BspCNI | CTCAG | 1 cut(s) | 474 |
| BspDI | ATCGAT | 1 cut(s) | 1251 |
| BspEI | TCCGGA | 1 cut(s) | 1003 |
| BspFNI | CGCG | 5 cut(s) | 182, 799, 950, 1373, 1695 |
| BspLI | GGNNCC | 4 cut(s) | 197, 300, 1002, 1570 |
| BspMI | ACCTGC | 1 cut(s) | 627 |
| BspOI | GCTAGC | 1 cut(s) | 1133 |
| BspPI | GGATC | 5 cut(s) | 66, 686, 995, 1008, 1645 |
| BspQI | GCTCTTC | 1 cut(s) | 1149 |
| BspT107I | GGYRCC | 1 cut(s) | 298 |
| BspTI | CTTAAG | 1 cut(s) | 1586 |
| BspTNI | GGTCTC | 2 cut(s) | 238, 1669 |
| BsrBI | CCGCTC | 1 cut(s) | 327 |
| BsrDI | GCAATG | 1 cut(s) | 1361 |
| BsrFI | RCCGGY | 2 cut(s) | 508, 1651 |
| BsrGI | TGTACA | 2 cut(s) | 526, 1594 |
| BsrI | ACTGG | 1 cut(s) | 1514 |
| BssAI | RCCGGY | 2 cut(s) | 508, 1651 |
| BssECI | CCNNGG | 9 cut(s) | 455, 456, 547, 609, 615, 975, 1011, 1275, 1371 |
| BssMI | GATC | 8 cut(s) | 71, 96, 133, 691, 926, 1000, 1299, 1637 |
| BssNI | GRCGYC | 1 cut(s) | 427 |
| BssSI | CACGAG | 1 cut(s) | 361 |
| BssT1I | CCWWGG | 1 cut(s) | 547 |
| Bst2BI | CACGAG | 1 cut(s) | 361 |
| Bst2UI | CCWGG | 4 cut(s) | 431, 702, 998, 1276 |
| Bst6I | CTCTTC | 3 cut(s) | 103, 660, 1149 |
| BstACI | GRCGYC | 1 cut(s) | 427 |
| BstAFI | CTTAAG | 1 cut(s) | 1586 |
| BstAUI | TGTACA | 2 cut(s) | 526, 1594 |
| BstC8I | GCNNGC | 9 cut(s) | 336, 348, 994, 1131, 1158, 1187, 1533, 1547, 1770 |
| BstDEI | CTNAG | 5 cut(s) | 482, 819, 859, 886, 1494 |
| BstDSI | CCRYGG | 2 cut(s) | 609, 1371 |
| BstEII | GGTNACC | 1 cut(s) | 1519 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1015 |
| BstF5I | GGATG | 4 cut(s) | 308, 591, 1228, 1264 |
| BstFNI | CGCG | 5 cut(s) | 182, 799, 950, 1373, 1695 |
| BstH2I | RGCGCY | 3 cut(s) | 395, 937, 1192 |
| BstHHI | GCGC | 6 cut(s) | 394, 645, 799, 936, 952, 1191 |
| BstKTI | GATC | 8 cut(s) | 74, 99, 136, 694, 929, 1003, 1302, 1640 |
| BstMAI | GTCTC | 3 cut(s) | 193, 238, 1669 |
| BstMBI | GATC | 8 cut(s) | 71, 96, 133, 691, 926, 1000, 1299, 1637 |
| BstMCI | CGRYCG | 3 cut(s) | 136, 162, 609 |
| BstNI | CCWGG | 4 cut(s) | 431, 702, 998, 1276 |
| BstNSI | RCATGY | 1 cut(s) | 778 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 809 |
| BstPI | GGTNACC | 1 cut(s) | 1519 |
| BstSCI | CCNGG | 9 cut(s) | 57, 191, 378, 429, 454, 455, 700, 996, 1274 |
| BstSFI | CTRYAG | 1 cut(s) | 987 |
| BstSLI | GKGCMC | 1 cut(s) | 222 |
| BstUI | CGCG | 5 cut(s) | 182, 799, 950, 1373, 1695 |
| BstV1I | GCAGC | 7 cut(s) | 939, 1024, 1056, 1330, 1351, 1594, 1669 |
| BstV2I | GAAGAC | 1 cut(s) | 809 |
| BstX2I | RGATCY | 2 cut(s) | 1000, 1637 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 346, 1342 |
| BstYI | RGATCY | 2 cut(s) | 1000, 1637 |
| Bsu15I | ATCGAT | 1 cut(s) | 1251 |
| BsuI | GTATCC | 1 cut(s) | 1000 |
| BsuRI | GGCC | 7 cut(s) | 5, 142, 334, 614, 753, 996, 1409 |
| BsuTUI | ATCGAT | 1 cut(s) | 1251 |
| BtgI | CCRYGG | 2 cut(s) | 609, 1371 |
| BtrI | CACGTC | 1 cut(s) | 88 |
| BtsCI | GGATG | 4 cut(s) | 308, 591, 1228, 1264 |
| BtsIMutI | CAGTG | 2 cut(s) | 201, 479 |
| BtuMI | TCGCGA | 1 cut(s) | 1695 |
| BveI | ACCTGC | 1 cut(s) | 627 |
| Cac8I | GCNNGC | 9 cut(s) | 336, 348, 994, 1131, 1158, 1187, 1533, 1547, 1770 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1153, 1400 |
| CfoI | GCGC | 6 cut(s) | 394, 645, 799, 936, 952, 1191 |
| Cfr10I | RCCGGY | 2 cut(s) | 508, 1651 |
| Cfr13I | GGNCC | 1 cut(s) | 1568 |
| Cfr42I | CCGCGG | 1 cut(s) | 1374 |
| Cfr9I | CCCGGG | 1 cut(s) | 455 |
| ClaI | ATCGAT | 1 cut(s) | 1251 |
| CseI | GACGC | 1 cut(s) | 435 |
| Csp6I | GTAC | 4 cut(s) | 299, 517, 527, 1595 |
| CviAII | CATG | 7 cut(s) | 65, 407, 530, 649, 775, 1456, 1679 |
| CviQI | GTAC | 4 cut(s) | 299, 517, 527, 1595 |
| DdeI | CTNAG | 5 cut(s) | 482, 819, 859, 886, 1494 |
| DpnI | GATC | 8 cut(s) | 73, 98, 135, 693, 928, 1002, 1301, 1639 |
| DpnII | GATC | 8 cut(s) | 71, 96, 133, 691, 926, 1000, 1299, 1637 |
| EaeI | YGGCCR | 4 cut(s) | 3, 140, 332, 612 |
| Eam1104I | CTCTTC | 3 cut(s) | 103, 660, 1149 |
| EarI | CTCTTC | 3 cut(s) | 103, 660, 1149 |
| EciI | GGCGGA | 1 cut(s) | 1298 |
| Eco130I | CCWWGG | 1 cut(s) | 547 |
| Eco147I | AGGCCT | 1 cut(s) | 1409 |
| Eco31I | GGTCTC | 2 cut(s) | 238, 1669 |
| Eco47I | GGWCC | 1 cut(s) | 1568 |
| Eco47III | AGCGCT | 1 cut(s) | 935 |
| Eco57I | CTGAAG | 3 cut(s) | 1040, 1130, 1581 |
| Eco88I | CYCGRG | 1 cut(s) | 455 |
| Eco91I | GGTNACC | 1 cut(s) | 1519 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1015 |
| EcoO65I | GGTNACC | 1 cut(s) | 1519 |
| EcoRII | CCWGG | 4 cut(s) | 429, 700, 996, 1274 |
| EcoT14I | CCWWGG | 1 cut(s) | 547 |
| EcoT22I | ATGCAT | 1 cut(s) | 577 |
| ErhI | CCWWGG | 1 cut(s) | 547 |
| FaeI | CATG | 7 cut(s) | 68, 410, 533, 652, 778, 1459, 1682 |
| FaqI | GGGAC | 3 cut(s) | 438, 1526, 1717 |
| FatI | CATG | 7 cut(s) | 64, 406, 529, 648, 774, 1455, 1678 |
| FauI | CCCGC | 1 cut(s) | 1126 |
| FblI | GTMKAC | 2 cut(s) | 403, 813 |
| FokI | GGATG | 4 cut(s) | 295, 598, 1235, 1271 |
| FspBI | CTAG | 4 cut(s) | 681, 755, 1130, 1289 |
| GlaI | GCGC | 6 cut(s) | 393, 644, 798, 935, 951, 1190 |
| GsuI | CTGGAG | 1 cut(s) | 788 |
| HaeII | RGCGCY | 3 cut(s) | 395, 937, 1192 |
| HaeIII | GGCC | 7 cut(s) | 5, 142, 334, 614, 753, 996, 1409 |
| HapII | CCGG | 9 cut(s) | 58, 143, 158, 192, 380, 456, 509, 1004, 1652 |
| HgaI | GACGC | 1 cut(s) | 435 |
| HhaI | GCGC | 6 cut(s) | 394, 645, 799, 936, 952, 1191 |
| Hin1I | GRCGYC | 1 cut(s) | 427 |
| Hin1II | CATG | 7 cut(s) | 68, 410, 533, 652, 778, 1459, 1682 |
| Hin6I | GCGC | 6 cut(s) | 392, 643, 797, 934, 950, 1189 |
| HinP1I | GCGC | 6 cut(s) | 392, 643, 797, 934, 950, 1189 |
| HincII | GTYRAC | 3 cut(s) | 404, 654, 814 |
| HindII | GTYRAC | 3 cut(s) | 404, 654, 814 |
| HindIII | AAGCTT | 1 cut(s) | 449 |
| HinfI | GANTC | 8 cut(s) | 375, 684, 715, 971, 1574, 1613, 1720, 1736 |
| HpaI | GTTAAC | 1 cut(s) | 654 |
| HpaII | CCGG | 9 cut(s) | 58, 143, 158, 192, 380, 456, 509, 1004, 1652 |
| HphI | GGTGA | 9 cut(s) | 27, 394, 445, 523, 679, 1027, 1531, 1622, 1643 |
| Hpy166II | GTNNAC | 9 cut(s) | 220, 263, 358, 404, 654, 814, 1105, 1568, 1595 |
| Hpy188I | TCNGA | 9 cut(s) | 18, 661, 931, 940, 976, 1059, 1603, 1669, 1741 |
| Hpy188III | TCNNGA | 4 cut(s) | 100, 767, 1004, 1694 |
| Hpy8I | GTNNAC | 9 cut(s) | 220, 263, 358, 404, 654, 814, 1105, 1568, 1595 |
| Hpy99I | CGWCG | 7 cut(s) | 18, 134, 307, 661, 815, 1097, 1100 |
| HpyAV | CCTTC | 9 cut(s) | 40, 289, 820, 1064, 1372, 1417, 1420, 1556, 1628 |
| HpyCH4IV | ACGT | 3 cut(s) | 87, 656, 852 |
| HpyCH4V | TGCA | 9 cut(s) | 64, 220, 575, 625, 1072, 1185, 1226, 1354, 1531 |
| HpyF3I | CTNAG | 5 cut(s) | 482, 819, 859, 886, 1494 |
| HpySE526I | ACGT | 3 cut(s) | 87, 656, 852 |
| Hsp92I | GRCGYC | 1 cut(s) | 427 |
| Hsp92II | CATG | 7 cut(s) | 68, 410, 533, 652, 778, 1459, 1682 |
| HspAI | GCGC | 6 cut(s) | 392, 643, 797, 934, 950, 1189 |
| Kpn2I | TCCGGA | 1 cut(s) | 1003 |
| KpnI | GGTACC | 1 cut(s) | 302 |
| KspAI | GTTAAC | 1 cut(s) | 654 |
| KspI | CCGCGG | 1 cut(s) | 1374 |
| Kzo9I | GATC | 8 cut(s) | 71, 96, 133, 691, 926, 1000, 1299, 1637 |
| LguI | GCTCTTC | 1 cut(s) | 1149 |
| LmnI | GCTCC | 4 cut(s) | 18, 324, 1285, 1315 |
| Lsp1109I | GCAGC | 7 cut(s) | 939, 1024, 1056, 1330, 1351, 1594, 1669 |
| LweI | GCATC | 7 cut(s) | 159, 426, 855, 1024, 1159, 1213, 1660 |
| MaeI | CTAG | 4 cut(s) | 681, 755, 1130, 1289 |
| MaeII | ACGT | 3 cut(s) | 87, 656, 852 |
| MaeIII | GTNAC | 4 cut(s) | 88, 982, 1390, 1519 |
| MalI | GATC | 8 cut(s) | 73, 98, 135, 693, 928, 1002, 1301, 1639 |
| MbiI | CCGCTC | 1 cut(s) | 327 |
| MboI | GATC | 8 cut(s) | 71, 96, 133, 691, 926, 1000, 1299, 1637 |
| MboII | GAAGA | 5 cut(s) | 120, 677, 814, 835, 1136 |
| MfeI | CAATTG | 2 cut(s) | 674, 1023 |
| MflI | RGATCY | 2 cut(s) | 1000, 1637 |
| MhlI | GDGCHC | 1 cut(s) | 222 |
| MlsI | TGGCCA | 1 cut(s) | 334 |
| MluCI | AATT | 5 cut(s) | 9, 674, 710, 1023, 1474 |
| MluNI | TGGCCA | 1 cut(s) | 334 |
| MlyI | GAGTC | 5 cut(s) | 724, 980, 1568, 1622, 1729 |
| MmeI | TCCRAC | 6 cut(s) | 264, 639, 1155, 1191, 1323, 1467 |
| Mox20I | TGGCCA | 1 cut(s) | 334 |
| Mph1103I | ATGCAT | 1 cut(s) | 577 |
| MroI | TCCGGA | 1 cut(s) | 1003 |
| MscI | TGGCCA | 1 cut(s) | 334 |
| MseI | TTAA | 3 cut(s) | 560, 653, 1587 |
| MslI | CAYNNNNRTG | 1 cut(s) | 630 |
| Msp20I | TGGCCA | 1 cut(s) | 334 |
| MspA1I | CMGCKG | 5 cut(s) | 215, 1031, 1373, 1397, 1559 |
| MspCI | CTTAAG | 1 cut(s) | 1586 |
| MspI | CCGG | 9 cut(s) | 58, 143, 158, 192, 380, 456, 509, 1004, 1652 |
| MspR9I | CCNGG | 9 cut(s) | 59, 193, 380, 431, 456, 457, 702, 998, 1276 |
| MunI | CAATTG | 2 cut(s) | 674, 1023 |
| Mva1269I | GAATGC | 2 cut(s) | 577, 799 |
| MvaI | CCWGG | 4 cut(s) | 431, 702, 998, 1276 |
| MvnI | CGCG | 5 cut(s) | 182, 799, 950, 1373, 1695 |
| NciI | CCSGG | 5 cut(s) | 59, 193, 380, 456, 457 |
| NdeII | GATC | 8 cut(s) | 71, 96, 133, 691, 926, 1000, 1299, 1637 |
| NheI | GCTAGC | 1 cut(s) | 1129 |
| NlaIII | CATG | 7 cut(s) | 68, 410, 533, 652, 778, 1459, 1682 |
| NlaIV | GGNNCC | 4 cut(s) | 197, 300, 1002, 1570 |
| NmeAIII | GCCGAG | 1 cut(s) | 640 |
| NmuCI | GTSAC | 4 cut(s) | 88, 982, 1390, 1519 |
| NruI | TCGCGA | 1 cut(s) | 1695 |
| NsiI | ATGCAT | 1 cut(s) | 577 |
| NspI | RCATGY | 1 cut(s) | 778 |
| PceI | AGGCCT | 1 cut(s) | 1409 |
| PciSI | GCTCTTC | 1 cut(s) | 1149 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 359 |
| PctI | GAATGC | 2 cut(s) | 577, 799 |
| PfeI | GAWTC | 3 cut(s) | 375, 684, 1736 |
| PflFI | GACNNNGTC | 1 cut(s) | 854 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1254 |
| PfoI | TCCNGGA | 1 cut(s) | 191 |
| Ple19I | CGATCG | 1 cut(s) | 136 |
| PleI | GAGTC | 5 cut(s) | 723, 979, 1568, 1621, 1728 |
| PpsI | GAGTC | 5 cut(s) | 723, 979, 1568, 1621, 1728 |
| PshAI | GACNNNNGTC | 1 cut(s) | 809 |
| Psp6I | CCWGG | 4 cut(s) | 429, 700, 996, 1274 |
| PspEI | GGTNACC | 1 cut(s) | 1519 |
| PspGI | CCWGG | 4 cut(s) | 429, 700, 996, 1274 |
| PspN4I | GGNNCC | 4 cut(s) | 197, 300, 1002, 1570 |
| PspPI | GGNCC | 1 cut(s) | 1568 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1153, 1400 |
| PsuI | RGATCY | 2 cut(s) | 1000, 1637 |
| PsyI | GACNNNGTC | 1 cut(s) | 854 |
| PvuI | CGATCG | 1 cut(s) | 136 |
| RruI | TCGCGA | 1 cut(s) | 1695 |
| RsaI | GTAC | 4 cut(s) | 300, 518, 528, 1596 |
| RsaNI | GTAC | 4 cut(s) | 299, 517, 527, 1595 |
| RseI | CAYNNNNRTG | 1 cut(s) | 630 |
| SacII | CCGCGG | 1 cut(s) | 1374 |
| SalI | GTCGAC | 2 cut(s) | 402, 812 |
| SapI | GCTCTTC | 1 cut(s) | 1149 |
| SaqAI | TTAA | 3 cut(s) | 560, 653, 1587 |
| Sau3AI | GATC | 8 cut(s) | 71, 96, 133, 691, 926, 1000, 1299, 1637 |
| Sau96I | GGNCC | 1 cut(s) | 1568 |
| SchI | GAGTC | 5 cut(s) | 724, 980, 1568, 1622, 1729 |
| ScrFI | CCNGG | 9 cut(s) | 59, 193, 380, 431, 456, 457, 702, 998, 1276 |
| SduI | GDGCHC | 1 cut(s) | 222 |
| SfaNI | GCATC | 7 cut(s) | 159, 426, 855, 1024, 1159, 1213, 1660 |
| SfcI | CTRYAG | 1 cut(s) | 987 |
| Sfr303I | CCGCGG | 1 cut(s) | 1374 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1651 |
| SgrBI | CCGCGG | 1 cut(s) | 1374 |
| SinI | GGWCC | 1 cut(s) | 1568 |
| SmaI | CCCGGG | 1 cut(s) | 457 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 630 |
| SmlI | CTYRAG | 1 cut(s) | 1586 |
| SmoI | CTYRAG | 1 cut(s) | 1586 |
| Sse9I | AATT | 5 cut(s) | 9, 674, 710, 1023, 1474 |
| SseBI | AGGCCT | 1 cut(s) | 1409 |
| SspMI | CTAG | 4 cut(s) | 681, 755, 1130, 1289 |
| StuI | AGGCCT | 1 cut(s) | 1409 |
| StyD4I | CCNGG | 9 cut(s) | 57, 191, 378, 429, 454, 455, 700, 996, 1274 |
| StyI | CCWWGG | 1 cut(s) | 547 |
| TaiI | ACGT | 3 cut(s) | 90, 659, 855 |
| TaqI | TCGA | 7 cut(s) | 132, 403, 605, 729, 813, 1251, 1421 |
| TasI | AATT | 5 cut(s) | 9, 674, 710, 1023, 1474 |
| TatI | WGTACW | 2 cut(s) | 526, 1594 |
| TauI | GCSGC | 5 cut(s) | 725, 1031, 1370, 1373, 1400 |
| TfiI | GAWTC | 3 cut(s) | 375, 684, 1736 |
| Tru1I | TTAA | 3 cut(s) | 560, 653, 1587 |
| Tru9I | TTAA | 3 cut(s) | 560, 653, 1587 |
| TscAI | CASTG | 2 cut(s) | 208, 486 |
| TseFI | GTSAC | 4 cut(s) | 88, 982, 1390, 1519 |
| TseI | GCWGC | 7 cut(s) | 952, 1037, 1069, 1318, 1364, 1582, 1682 |
| Tsp45I | GTSAC | 4 cut(s) | 88, 982, 1390, 1519 |
| TspDTI | ATGAA | 2 cut(s) | 504, 637 |
| TspGWI | ACGGA | 1 cut(s) | 1137 |
| TspMI | CCCGGG | 1 cut(s) | 455 |
| TspRI | CASTG | 2 cut(s) | 208, 486 |
| Tth111I | GACNNNGTC | 1 cut(s) | 854 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1254 |
| Vha464I | CTTAAG | 1 cut(s) | 1586 |
| VneI | GTGCAC | 1 cut(s) | 218 |
| VpaK11BI | GGWCC | 1 cut(s) | 1568 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1015 |
| XapI | RAATTY | 1 cut(s) | 9 |
| XceI | RCATGY | 1 cut(s) | 778 |
| XmaI | CCCGGG | 1 cut(s) | 455 |
| XmiI | GTMKAC | 2 cut(s) | 403, 813 |
| XspI | CTAG | 4 cut(s) | 681, 755, 1130, 1289 |
| Zsp2I | ATGCAT | 1 cut(s) | 577 |