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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 120, 258, 578, 707 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 46 |
| AccBSI | CCGCTC | 3 cut(s) | 16, 256, 714 |
| AccI | GTMKAC | 1 cut(s) | 443 |
| AccII | CGCG | 3 cut(s) | 251, 322, 677 |
| AcoI | YGGCCR | 3 cut(s) | 312, 475, 585 |
| AcuI | CTGAAG | 2 cut(s) | 398, 723 |
| AcyI | GRCGYC | 1 cut(s) | 259 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 46, 268, 321, 379, 795 |
| AflIII | ACRYGT | 1 cut(s) | 275 |
| AgsI | TTSAA | 3 cut(s) | 92, 454, 529 |
| AjiI | CACGTC | 1 cut(s) | 328 |
| AjnI | CCWGG | 1 cut(s) | 171 |
| AluBI | AGCT | 9 cut(s) | 108, 181, 187, 220, 240, 287, 304, 355, 424 |
| AluI | AGCT | 9 cut(s) | 108, 181, 187, 220, 240, 287, 304, 355, 424 |
| Alw26I | GTCTC | 4 cut(s) | 212, 221, 352, 790 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 172 |
| Ama87I | CYCGRG | 3 cut(s) | 294, 715, 789 |
| AoxI | GGCC | 7 cut(s) | 312, 369, 393, 475, 552, 573, 585 |
| ApeKI | GCWGC | 6 cut(s) | 155, 166, 181, 184, 503, 806 |
| AspLEI | GCGC | 3 cut(s) | 78, 261, 322 |
| AspS9I | GGNCC | 1 cut(s) | 370 |
| AsuC2I | CCSGG | 2 cut(s) | 790, 791 |
| AsuHPI | GGTGA | 4 cut(s) | 90, 479, 626, 737 |
| AvaI | CYCGRG | 3 cut(s) | 294, 715, 789 |
| BaeGI | GKGCMC | 2 cut(s) | 123, 712 |
| BalI | TGGCCA | 1 cut(s) | 587 |
| BanI | GGYRCC | 4 cut(s) | 120, 258, 578, 707 |
| BbvI | GCAGC | 6 cut(s) | 167, 168, 178, 196, 490, 793 |
| BccI | CCATC | 1 cut(s) | 193 |
| BceAI | ACGGC | 2 cut(s) | 299, 462 |
| BciT130I | CCWGG | 1 cut(s) | 173 |
| BcnI | CCSGG | 2 cut(s) | 790, 791 |
| BcoDI | GTCTC | 4 cut(s) | 212, 221, 352, 790 |
| BfaI | CTAG | 1 cut(s) | 482 |
| BfmI | CTRYAG | 2 cut(s) | 103, 182 |
| BfoI | RGCGCY | 1 cut(s) | 262 |
| BglII | AGATCT | 1 cut(s) | 414 |
| BlpI | GCTNAGC | 2 cut(s) | 12, 109 |
| Bme1390I | CCNGG | 3 cut(s) | 173, 790, 791 |
| BmeT110I | CYCGRG | 3 cut(s) | 294, 715, 789 |
| BmgBI | CACGTC | 1 cut(s) | 328 |
| BmgT120I | GGNCC | 1 cut(s) | 370 |
| BmiI | GGNNCC | 5 cut(s) | 122, 260, 580, 690, 709 |
| BmrFI | CCNGG | 3 cut(s) | 173, 790, 791 |
| BmrI | ACTGGG | 1 cut(s) | 634 |
| BmsI | GCATC | 3 cut(s) | 280, 644, 655 |
| BmuI | ACTGGG | 1 cut(s) | 634 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 288, 320 |
| BpmI | CTGGAG | 2 cut(s) | 83, 194 |
| Bpu10I | CCTNAGC | 1 cut(s) | 188 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 12, 109 |
| BpuMI | CCSGG | 2 cut(s) | 790, 791 |
| BsaHI | GRCGYC | 1 cut(s) | 259 |
| BsaI | GGTCTC | 2 cut(s) | 212, 790 |
| BsaJI | CCNNGG | 8 cut(s) | 171, 267, 396, 561, 582, 696, 780, 789 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 46, 268, 321, 379, 795 |
| Bse118I | RCCGGY | 1 cut(s) | 575 |
| Bse1I | ACTGG | 1 cut(s) | 629 |
| BseBI | CCWGG | 1 cut(s) | 173 |
| BseDI | CCNNGG | 8 cut(s) | 171, 267, 396, 561, 582, 696, 780, 789 |
| BseGI | GGATG | 3 cut(s) | 635, 670, 688 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 46, 268, 321, 379, 795 |
| BseMII | CTCAG | 4 cut(s) | 123, 438, 770, 788 |
| BseNI | ACTGG | 1 cut(s) | 629 |
| BseRI | GAGGAG | 2 cut(s) | 209, 756 |
| BseSI | GKGCMC | 2 cut(s) | 123, 712 |
| BseXI | GCAGC | 6 cut(s) | 167, 168, 178, 196, 490, 793 |
| BseYI | CCCAGC | 2 cut(s) | 639, 794 |
| Bsh1236I | CGCG | 3 cut(s) | 251, 322, 677 |
| BshFI | GGCC | 7 cut(s) | 314, 371, 395, 477, 554, 575, 587 |
| BshNI | GGYRCC | 4 cut(s) | 120, 258, 578, 707 |
| BsiHKCI | CYCGRG | 3 cut(s) | 294, 715, 789 |
| BsiSI | CCGG | 4 cut(s) | 576, 648, 743, 790 |
| BslFI | GGGAC | 2 cut(s) | 338, 499 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 46, 268, 321, 379, 795 |
| BsmAI | GTCTC | 4 cut(s) | 212, 221, 352, 790 |
| BsmFI | GGGAC | 2 cut(s) | 338, 499 |
| BsnI | GGCC | 7 cut(s) | 314, 371, 395, 477, 554, 575, 587 |
| Bso31I | GGTCTC | 2 cut(s) | 212, 790 |
| BsoBI | CYCGRG | 3 cut(s) | 294, 715, 789 |
| Bsp1286I | GDGCHC | 2 cut(s) | 123, 712 |
| Bsp143I | GATC | 1 cut(s) | 414 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 12, 109 |
| Bsp19I | CCATGG | 1 cut(s) | 582 |
| BspANI | GGCC | 7 cut(s) | 314, 371, 395, 477, 554, 575, 587 |
| BspCNI | CTCAG | 5 cut(s) | 4, 122, 439, 769, 787 |
| BspFNI | CGCG | 3 cut(s) | 251, 322, 677 |
| BspLI | GGNNCC | 5 cut(s) | 122, 260, 580, 690, 709 |
| BspMAI | CTGCAG | 1 cut(s) | 186 |
| BspT107I | GGYRCC | 4 cut(s) | 120, 258, 578, 707 |
| BspTNI | GGTCTC | 2 cut(s) | 212, 790 |
| BsrBI | CCGCTC | 3 cut(s) | 16, 256, 714 |
| BsrFI | RCCGGY | 1 cut(s) | 575 |
| BsrI | ACTGG | 1 cut(s) | 629 |
| BssAI | RCCGGY | 1 cut(s) | 575 |
| BssECI | CCNNGG | 8 cut(s) | 171, 267, 396, 561, 582, 696, 780, 789 |
| BssMI | GATC | 1 cut(s) | 414 |
| BssNI | GRCGYC | 1 cut(s) | 259 |
| BssT1I | CCWWGG | 3 cut(s) | 267, 396, 582 |
| Bst2UI | CCWGG | 1 cut(s) | 173 |
| Bst4CI | ACNGT | 5 cut(s) | 45, 85, 96, 525, 654 |
| Bst6I | CTCTTC | 1 cut(s) | 449 |
| BstACI | GRCGYC | 1 cut(s) | 259 |
| BstC8I | GCNNGC | 6 cut(s) | 222, 302, 501, 645, 675, 712 |
| BstDEI | CTNAG | 7 cut(s) | 12, 109, 188, 351, 447, 756, 774 |
| BstDSI | CCRYGG | 1 cut(s) | 582 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 266, 377 |
| BstF5I | GGATG | 3 cut(s) | 635, 670, 688 |
| BstFNI | CGCG | 3 cut(s) | 251, 322, 677 |
| BstH2I | RGCGCY | 1 cut(s) | 262 |
| BstHHI | GCGC | 3 cut(s) | 78, 261, 322 |
| BstKTI | GATC | 1 cut(s) | 417 |
| BstMAI | GTCTC | 4 cut(s) | 212, 221, 352, 790 |
| BstMBI | GATC | 1 cut(s) | 414 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 509, 512, 572, 674, 707, 720 |
| BstNI | CCWGG | 1 cut(s) | 173 |
| BstNSI | RCATGY | 1 cut(s) | 279 |
| BstSCI | CCNGG | 3 cut(s) | 171, 788, 789 |
| BstSFI | CTRYAG | 2 cut(s) | 103, 182 |
| BstSLI | GKGCMC | 2 cut(s) | 123, 712 |
| BstUI | CGCG | 3 cut(s) | 251, 322, 677 |
| BstV1I | GCAGC | 6 cut(s) | 167, 168, 178, 196, 490, 793 |
| BstX2I | RGATCY | 1 cut(s) | 414 |
| BstYI | RGATCY | 1 cut(s) | 414 |
| BsuRI | GGCC | 7 cut(s) | 314, 371, 395, 477, 554, 575, 587 |
| BtgI | CCRYGG | 1 cut(s) | 582 |
| BtrI | CACGTC | 1 cut(s) | 328 |
| BtsCI | GGATG | 3 cut(s) | 635, 670, 688 |
| Cac8I | GCNNGC | 6 cut(s) | 222, 302, 501, 645, 675, 712 |
| CaiI | CAGNNNCTG | 1 cut(s) | 172 |
| CfoI | GCGC | 3 cut(s) | 78, 261, 322 |
| Cfr10I | RCCGGY | 1 cut(s) | 575 |
| Cfr13I | GGNCC | 1 cut(s) | 370 |
| Cfr9I | CCCGGG | 1 cut(s) | 789 |
| CseI | GACGC | 1 cut(s) | 257 |
| CviAII | CATG | 6 cut(s) | 140, 276, 344, 367, 556, 583 |
| DdeI | CTNAG | 7 cut(s) | 12, 109, 188, 351, 447, 756, 774 |
| DinI | GGCGCC | 1 cut(s) | 260 |
| DpnI | GATC | 1 cut(s) | 416 |
| DpnII | GATC | 1 cut(s) | 414 |
| EaeI | YGGCCR | 3 cut(s) | 312, 475, 585 |
| Eam1104I | CTCTTC | 1 cut(s) | 449 |
| EarI | CTCTTC | 1 cut(s) | 449 |
| EciI | GGCGGA | 3 cut(s) | 260, 554, 761 |
| Eco130I | CCWWGG | 3 cut(s) | 267, 396, 582 |
| Eco31I | GGTCTC | 2 cut(s) | 212, 790 |
| Eco32I | GATATC | 1 cut(s) | 619 |
| Eco57I | CTGAAG | 2 cut(s) | 398, 723 |
| Eco88I | CYCGRG | 3 cut(s) | 294, 715, 789 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 266, 377 |
| EcoRII | CCWGG | 1 cut(s) | 171 |
| EcoRV | GATATC | 1 cut(s) | 619 |
| EcoT14I | CCWWGG | 3 cut(s) | 267, 396, 582 |
| EgeI | GGCGCC | 1 cut(s) | 260 |
| EheI | GGCGCC | 1 cut(s) | 260 |
| ErhI | CCWWGG | 3 cut(s) | 267, 396, 582 |
| FaeI | CATG | 6 cut(s) | 143, 279, 347, 370, 559, 586 |
| FaqI | GGGAC | 2 cut(s) | 338, 499 |
| FatI | CATG | 6 cut(s) | 139, 275, 343, 366, 555, 582 |
| FauI | CCCGC | 4 cut(s) | 315, 682, 700, 719 |
| FblI | GTMKAC | 1 cut(s) | 443 |
| FokI | GGATG | 3 cut(s) | 622, 677, 695 |
| FspBI | CTAG | 1 cut(s) | 482 |
| GlaI | GCGC | 3 cut(s) | 77, 260, 321 |
| GsaI | CCCAGC | 2 cut(s) | 643, 798 |
| GsuI | CTGGAG | 2 cut(s) | 83, 194 |
| HaeII | RGCGCY | 1 cut(s) | 262 |
| HaeIII | GGCC | 7 cut(s) | 314, 371, 395, 477, 554, 575, 587 |
| HapII | CCGG | 4 cut(s) | 576, 648, 743, 790 |
| HgaI | GACGC | 1 cut(s) | 257 |
| HhaI | GCGC | 3 cut(s) | 78, 261, 322 |
| Hin1I | GRCGYC | 1 cut(s) | 259 |
| Hin1II | CATG | 6 cut(s) | 143, 279, 347, 370, 559, 586 |
| Hin6I | GCGC | 3 cut(s) | 76, 259, 320 |
| HinP1I | GCGC | 3 cut(s) | 76, 259, 320 |
| HinfI | GANTC | 3 cut(s) | 604, 752, 763 |
| HpaII | CCGG | 4 cut(s) | 576, 648, 743, 790 |
| HphI | GGTGA | 4 cut(s) | 90, 479, 626, 737 |
| Hpy166II | GTNNAC | 1 cut(s) | 444 |
| Hpy188I | TCNGA | 2 cut(s) | 56, 781 |
| Hpy188III | TCNNGA | 2 cut(s) | 211, 662 |
| Hpy8I | GTNNAC | 1 cut(s) | 444 |
| HpyAV | CCTTC | 4 cut(s) | 373, 544, 565, 698 |
| HpyCH4III | ACNGT | 5 cut(s) | 45, 85, 96, 525, 654 |
| HpyCH4IV | ACGT | 1 cut(s) | 327 |
| HpyCH4V | TGCA | 2 cut(s) | 184, 668 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 509, 512, 572, 674, 707, 720 |
| HpyF3I | CTNAG | 7 cut(s) | 12, 109, 188, 351, 447, 756, 774 |
| HpySE526I | ACGT | 1 cut(s) | 327 |
| Hsp92I | GRCGYC | 1 cut(s) | 259 |
| Hsp92II | CATG | 6 cut(s) | 143, 279, 347, 370, 559, 586 |
| HspAI | GCGC | 3 cut(s) | 76, 259, 320 |
| KasI | GGCGCC | 1 cut(s) | 258 |
| Kzo9I | GATC | 1 cut(s) | 414 |
| LmnI | GCTCC | 3 cut(s) | 178, 217, 253 |
| Lsp1109I | GCAGC | 6 cut(s) | 167, 168, 178, 196, 490, 793 |
| LweI | GCATC | 3 cut(s) | 280, 644, 655 |
| MaeI | CTAG | 1 cut(s) | 482 |
| MaeII | ACGT | 1 cut(s) | 327 |
| MaeIII | GTNAC | 1 cut(s) | 96 |
| MalI | GATC | 1 cut(s) | 416 |
| MbiI | CCGCTC | 3 cut(s) | 16, 256, 714 |
| MboI | GATC | 1 cut(s) | 414 |
| MboII | GAAGA | 3 cut(s) | 19, 466, 761 |
| MflI | RGATCY | 1 cut(s) | 414 |
| MhlI | GDGCHC | 2 cut(s) | 123, 712 |
| MlsI | TGGCCA | 1 cut(s) | 587 |
| MluCI | AATT | 2 cut(s) | 408, 657 |
| MluNI | TGGCCA | 1 cut(s) | 587 |
| Mly113I | GGCGCC | 1 cut(s) | 259 |
| MlyI | GAGTC | 1 cut(s) | 757 |
| Mox20I | TGGCCA | 1 cut(s) | 587 |
| MscI | TGGCCA | 1 cut(s) | 587 |
| Msp20I | TGGCCA | 1 cut(s) | 587 |
| MspA1I | CMGCKG | 3 cut(s) | 287, 424, 760 |
| MspI | CCGG | 4 cut(s) | 576, 648, 743, 790 |
| MspR9I | CCNGG | 3 cut(s) | 173, 790, 791 |
| MvaI | CCWGG | 1 cut(s) | 173 |
| MvnI | CGCG | 3 cut(s) | 251, 322, 677 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 509, 512, 572, 674, 707, 720 |
| NarI | GGCGCC | 1 cut(s) | 259 |
| NciI | CCSGG | 2 cut(s) | 790, 791 |
| NcoI | CCATGG | 1 cut(s) | 582 |
| NdeII | GATC | 1 cut(s) | 414 |
| NlaIII | CATG | 6 cut(s) | 143, 279, 347, 370, 559, 586 |
| NlaIV | GGNNCC | 5 cut(s) | 122, 260, 580, 690, 709 |
| NmeAIII | GCCGAG | 1 cut(s) | 721 |
| NmuCI | GTSAC | 1 cut(s) | 96 |
| NspI | RCATGY | 1 cut(s) | 279 |
| PaeR7I | CTCGAG | 1 cut(s) | 294 |
| PciI | ACATGT | 1 cut(s) | 275 |
| PfeI | GAWTC | 2 cut(s) | 604, 752 |
| PflFI | GACNNNGTC | 2 cut(s) | 344, 626 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 46 |
| PleI | GAGTC | 1 cut(s) | 757 |
| PluTI | GGCGCC | 1 cut(s) | 262 |
| PpsI | GAGTC | 1 cut(s) | 757 |
| PscI | ACATGT | 1 cut(s) | 275 |
| Psp6I | CCWGG | 1 cut(s) | 171 |
| PspFI | CCCAGC | 2 cut(s) | 639, 794 |
| PspGI | CCWGG | 1 cut(s) | 171 |
| PspN4I | GGNNCC | 5 cut(s) | 122, 260, 580, 690, 709 |
| PspPI | GGNCC | 1 cut(s) | 370 |
| PspXI | VCTCGAGB | 1 cut(s) | 294 |
| PstI | CTGCAG | 1 cut(s) | 186 |
| PstNI | CAGNNNCTG | 1 cut(s) | 172 |
| PsuI | RGATCY | 1 cut(s) | 414 |
| PsyI | GACNNNGTC | 2 cut(s) | 344, 626 |
| PvuII | CAGCTG | 2 cut(s) | 287, 424 |
| Sau3AI | GATC | 1 cut(s) | 414 |
| Sau96I | GGNCC | 1 cut(s) | 370 |
| SchI | GAGTC | 1 cut(s) | 757 |
| ScrFI | CCNGG | 3 cut(s) | 173, 790, 791 |
| SduI | GDGCHC | 2 cut(s) | 123, 712 |
| SfaNI | GCATC | 3 cut(s) | 280, 644, 655 |
| SfcI | CTRYAG | 2 cut(s) | 103, 182 |
| SfoI | GGCGCC | 1 cut(s) | 260 |
| Sfr274I | CTCGAG | 1 cut(s) | 294 |
| SlaI | CTCGAG | 1 cut(s) | 294 |
| SmaI | CCCGGG | 1 cut(s) | 791 |
| SmlI | CTYRAG | 1 cut(s) | 294 |
| SmoI | CTYRAG | 1 cut(s) | 294 |
| Sse9I | AATT | 2 cut(s) | 408, 657 |
| SspDI | GGCGCC | 1 cut(s) | 258 |
| SspMI | CTAG | 1 cut(s) | 482 |
| StyD4I | CCNGG | 3 cut(s) | 171, 788, 789 |
| StyI | CCWWGG | 3 cut(s) | 267, 396, 582 |
| TaaI | ACNGT | 5 cut(s) | 45, 85, 96, 525, 654 |
| TaiI | ACGT | 1 cut(s) | 330 |
| TaqI | TCGA | 3 cut(s) | 30, 295, 621 |
| TaqII | GACCGA | 1 cut(s) | 575 |
| TasI | AATT | 2 cut(s) | 408, 657 |
| TauI | GCSGC | 5 cut(s) | 19, 259, 437, 515, 569 |
| TfiI | GAWTC | 2 cut(s) | 604, 752 |
| TseFI | GTSAC | 1 cut(s) | 96 |
| TseI | GCWGC | 6 cut(s) | 155, 166, 181, 184, 503, 806 |
| Tsp45I | GTSAC | 1 cut(s) | 96 |
| TspDTI | ATGAA | 1 cut(s) | 13 |
| TspGWI | ACGGA | 4 cut(s) | 20, 118, 248, 503 |
| TspMI | CCCGGG | 1 cut(s) | 789 |
| Tth111I | GACNNNGTC | 2 cut(s) | 344, 626 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 46 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 266, 377 |
| XceI | RCATGY | 1 cut(s) | 279 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 169, 589 |
| XhoI | CTCGAG | 1 cut(s) | 294 |
| XmaI | CCCGGG | 1 cut(s) | 789 |
| XmiI | GTMKAC | 1 cut(s) | 443 |
| XspI | CTAG | 1 cut(s) | 482 |