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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 652, 819, 1112, 1205 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1122 |
| AccBSI | CCGCTC | 2 cut(s) | 742, 1193 |
| AccII | CGCG | 7 cut(s) | 204, 440, 683, 707, 848, 858, 1148 |
| AclWI | GGATC | 2 cut(s) | 234, 951 |
| AcoI | YGGCCR | 4 cut(s) | 825, 873, 1005, 1351 |
| AcsI | RAATTY | 2 cut(s) | 9, 244 |
| AcuI | CTGAAG | 2 cut(s) | 44, 1121 |
| AcyI | GRCGYC | 5 cut(s) | 653, 729, 820, 1113, 1133 |
| AfaI | GTAC | 3 cut(s) | 710, 1183, 1327 |
| AflIII | ACRYGT | 1 cut(s) | 927 |
| AgeI | ACCGGT | 1 cut(s) | 493 |
| AgsI | TTSAA | 4 cut(s) | 44, 176, 253, 1027 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1341 |
| AhlI | ACTAGT | 1 cut(s) | 110 |
| AjiI | CACGTC | 2 cut(s) | 889, 928 |
| AjnI | CCWGG | 6 cut(s) | 184, 527, 690, 731, 822, 978 |
| AleI | CACNNNNGTG | 1 cut(s) | 539 |
| AluBI | AGCT | 8 cut(s) | 274, 641, 748, 781, 865, 916, 1157, 1166 |
| AluI | AGCT | 8 cut(s) | 274, 641, 748, 781, 865, 916, 1157, 1166 |
| Alw21I | GWGCWC | 1 cut(s) | 750 |
| Alw26I | GTCTC | 5 cut(s) | 299, 596, 773, 913, 1328 |
| AlwI | GGATC | 2 cut(s) | 234, 951 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 662 |
| Ama87I | CYCGRG | 1 cut(s) | 1213 |
| AoxI | GGCC | 8 cut(s) | 518, 612, 825, 873, 1005, 1050, 1305, 1351 |
| ApaI | GGGCCC | 1 cut(s) | 616 |
| ApeKI | GCWGC | 8 cut(s) | 18, 382, 431, 499, 524, 662, 1064, 1419 |
| ApoI | RAATTY | 2 cut(s) | 9, 244 |
| AsiGI | ACCGGT | 1 cut(s) | 493 |
| AspLEI | GCGC | 6 cut(s) | 442, 558, 655, 822, 1115, 1150 |
| AspS9I | GGNCC | 4 cut(s) | 612, 613, 1051, 1306 |
| AsuC2I | CCSGG | 5 cut(s) | 133, 302, 752, 1241, 1316 |
| AsuHPI | GGTGA | 4 cut(s) | 386, 694, 961, 977 |
| AvaI | CYCGRG | 1 cut(s) | 1213 |
| BaeGI | GKGCMC | 3 cut(s) | 481, 616, 1081 |
| BalI | TGGCCA | 1 cut(s) | 827 |
| BanI | GGYRCC | 4 cut(s) | 652, 819, 1112, 1205 |
| BanII | GRGCYC | 2 cut(s) | 616, 750 |
| BauI | CACGAG | 1 cut(s) | 165 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 750 |
| BbvCI | CCTCAGC | 2 cut(s) | 576, 987 |
| BbvI | GCAGC | 8 cut(s) | 5, 369, 418, 511, 511, 649, 1076, 1431 |
| BccI | CCATC | 3 cut(s) | 372, 1196, 1316 |
| BceAI | ACGGC | 2 cut(s) | 449, 860 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 194, 228 |
| BciT130I | CCWGG | 6 cut(s) | 186, 529, 692, 733, 824, 980 |
| BciVI | GTATCC | 1 cut(s) | 418 |
| BcnI | CCSGG | 5 cut(s) | 133, 302, 752, 1241, 1316 |
| BcoDI | GTCTC | 5 cut(s) | 299, 596, 773, 913, 1328 |
| BcuI | ACTAGT | 1 cut(s) | 110 |
| BfaI | CTAG | 4 cut(s) | 111, 633, 959, 1074 |
| BfmI | CTRYAG | 1 cut(s) | 938 |
| BfoI | RGCGCY | 3 cut(s) | 656, 823, 1116 |
| BfuI | GTATCC | 1 cut(s) | 418 |
| BlpI | GCTNAGC | 1 cut(s) | 317 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1341 |
| BmeT110I | CYCGRG | 1 cut(s) | 1213 |
| BmgBI | CACGTC | 2 cut(s) | 889, 928 |
| BmgT120I | GGNCC | 4 cut(s) | 612, 613, 1051, 1306 |
| BmiI | GGNNCC | 8 cut(s) | 333, 613, 614, 654, 821, 995, 1114, 1207 |
| BmrI | ACTGGG | 2 cut(s) | 1132, 1267 |
| BmsI | GCATC | 5 cut(s) | 586, 666, 832, 1086, 1399 |
| BmuI | ACTGGG | 2 cut(s) | 1132, 1267 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BpmI | CTGGAG | 3 cut(s) | 755, 938, 1112 |
| Bpu10I | CCTNAGC | 4 cut(s) | 576, 792, 987, 1158 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 317 |
| BpuEI | CTTGAG | 1 cut(s) | 1179 |
| BpuMI | CCSGG | 5 cut(s) | 133, 302, 752, 1241, 1316 |
| Bsa29I | ATCGAT | 1 cut(s) | 48 |
| BsaHI | GRCGYC | 5 cut(s) | 653, 729, 820, 1113, 1133 |
| BsaI | GGTCTC | 2 cut(s) | 596, 773 |
| BsaJI | CCNNGG | 9 cut(s) | 22, 222, 327, 336, 648, 732, 828, 979, 1314 |
| BsaWI | WCCGGW | 1 cut(s) | 493 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 893, 923 |
| Bse118I | RCCGGY | 5 cut(s) | 493, 502, 1141, 1171, 1356 |
| Bse1I | ACTGG | 4 cut(s) | 656, 1127, 1273, 1354 |
| BseBI | CCWGG | 6 cut(s) | 186, 529, 692, 733, 824, 980 |
| BseCI | ATCGAT | 1 cut(s) | 48 |
| BseDI | CCNNGG | 9 cut(s) | 22, 222, 327, 336, 648, 732, 828, 979, 1314 |
| BseGI | GGATG | 5 cut(s) | 598, 814, 1252, 1327, 1381 |
| BseMII | CTCAG | 4 cut(s) | 567, 657, 978, 1050 |
| BseNI | ACTGG | 4 cut(s) | 656, 1127, 1273, 1354 |
| BseRI | GAGGAG | 2 cut(s) | 593, 1254 |
| BseSI | GKGCMC | 3 cut(s) | 481, 616, 1081 |
| BseX3I | CGGCCG | 1 cut(s) | 1005 |
| BseXI | GCAGC | 8 cut(s) | 5, 369, 418, 511, 511, 649, 1076, 1431 |
| BseYI | CCCAGC | 6 cut(s) | 282, 781, 1254, 1292, 1432, 1441 |
| BsgI | GTGCAG | 1 cut(s) | 518 |
| Bsh1236I | CGCG | 7 cut(s) | 204, 440, 683, 707, 848, 858, 1148 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1008, 1146 |
| BshFI | GGCC | 8 cut(s) | 520, 614, 827, 875, 1007, 1052, 1307, 1353 |
| BshNI | GGYRCC | 4 cut(s) | 652, 819, 1112, 1205 |
| BshTI | ACCGGT | 1 cut(s) | 493 |
| BshVI | ATCGAT | 1 cut(s) | 48 |
| BsiEI | CGRYCG | 2 cut(s) | 1008, 1146 |
| BsiHKAI | GWGCWC | 1 cut(s) | 750 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1213 |
| BsiWI | CGTACG | 1 cut(s) | 708 |
| BslFI | GGGAC | 5 cut(s) | 899, 916, 1172, 1270, 1329 |
| BsmAI | GTCTC | 5 cut(s) | 299, 596, 773, 913, 1328 |
| BsmBI | CGTCTC | 1 cut(s) | 299 |
| BsmFI | GGGAC | 5 cut(s) | 899, 916, 1172, 1270, 1329 |
| BsmI | GAATGC | 1 cut(s) | 856 |
| BsnI | GGCC | 8 cut(s) | 520, 614, 827, 875, 1007, 1052, 1307, 1353 |
| Bso31I | GGTCTC | 2 cut(s) | 596, 773 |
| BsoBI | CYCGRG | 1 cut(s) | 1213 |
| Bsp120I | GGGCCC | 1 cut(s) | 612 |
| Bsp1286I | GDGCHC | 4 cut(s) | 481, 616, 750, 1081 |
| Bsp143I | GATC | 4 cut(s) | 151, 226, 237, 943 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 317 |
| Bsp19I | CCATGG | 1 cut(s) | 222 |
| BspANI | GGCC | 8 cut(s) | 520, 614, 827, 875, 1007, 1052, 1307, 1353 |
| BspCNI | CTCAG | 4 cut(s) | 568, 658, 979, 1051 |
| BspDI | ATCGAT | 1 cut(s) | 48 |
| BspFNI | CGCG | 7 cut(s) | 204, 440, 683, 707, 848, 858, 1148 |
| BspLI | GGNNCC | 8 cut(s) | 333, 613, 614, 654, 821, 995, 1114, 1207 |
| BspPI | GGATC | 2 cut(s) | 234, 951 |
| BspT107I | GGYRCC | 4 cut(s) | 652, 819, 1112, 1205 |
| BspTNI | GGTCTC | 2 cut(s) | 596, 773 |
| BsrBI | CCGCTC | 2 cut(s) | 742, 1193 |
| BsrFI | RCCGGY | 5 cut(s) | 493, 502, 1141, 1171, 1356 |
| BsrI | ACTGG | 4 cut(s) | 656, 1127, 1273, 1354 |
| BssAI | RCCGGY | 5 cut(s) | 493, 502, 1141, 1171, 1356 |
| BssECI | CCNNGG | 9 cut(s) | 22, 222, 327, 336, 648, 732, 828, 979, 1314 |
| BssMI | GATC | 4 cut(s) | 151, 226, 237, 943 |
| BssNI | GRCGYC | 5 cut(s) | 653, 729, 820, 1113, 1133 |
| BssSI | CACGAG | 1 cut(s) | 165 |
| BssT1I | CCWWGG | 3 cut(s) | 222, 648, 828 |
| Bst2BI | CACGAG | 1 cut(s) | 165 |
| Bst2UI | CCWGG | 6 cut(s) | 186, 529, 692, 733, 824, 980 |
| Bst4CI | ACNGT | 3 cut(s) | 292, 998, 1186 |
| Bst6I | CTCTTC | 1 cut(s) | 947 |
| BstACI | GRCGYC | 5 cut(s) | 653, 729, 820, 1113, 1133 |
| BstDEI | CTNAG | 7 cut(s) | 317, 576, 666, 792, 987, 1059, 1158 |
| BstDSI | CCRYGG | 2 cut(s) | 222, 336 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 827, 938, 1058 |
| BstF5I | GGATG | 5 cut(s) | 598, 814, 1252, 1327, 1381 |
| BstFNI | CGCG | 7 cut(s) | 204, 440, 683, 707, 848, 858, 1148 |
| BstH2I | RGCGCY | 3 cut(s) | 656, 823, 1116 |
| BstHHI | GCGC | 6 cut(s) | 442, 558, 655, 822, 1115, 1150 |
| BstKTI | GATC | 4 cut(s) | 154, 229, 240, 946 |
| BstMAI | GTCTC | 5 cut(s) | 299, 596, 773, 913, 1328 |
| BstMBI | GATC | 4 cut(s) | 151, 226, 237, 943 |
| BstMCI | CGRYCG | 2 cut(s) | 1008, 1146 |
| BstNI | CCWGG | 6 cut(s) | 186, 529, 692, 733, 824, 980 |
| BstSFI | CTRYAG | 1 cut(s) | 938 |
| BstSLI | GKGCMC | 3 cut(s) | 481, 616, 1081 |
| BstUI | CGCG | 7 cut(s) | 204, 440, 683, 707, 848, 858, 1148 |
| BstV1I | GCAGC | 8 cut(s) | 5, 369, 418, 511, 511, 649, 1076, 1431 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 223, 371 |
| BstZI | CGGCCG | 1 cut(s) | 1005 |
| Bsu15I | ATCGAT | 1 cut(s) | 48 |
| BsuI | GTATCC | 1 cut(s) | 418 |
| BsuRI | GGCC | 8 cut(s) | 520, 614, 827, 875, 1007, 1052, 1307, 1353 |
| BsuTUI | ATCGAT | 1 cut(s) | 48 |
| BtgI | CCRYGG | 2 cut(s) | 222, 336 |
| BtrI | CACGTC | 2 cut(s) | 889, 928 |
| BtsCI | GGATG | 5 cut(s) | 598, 814, 1252, 1327, 1381 |
| BtsI | GCAGTG | 1 cut(s) | 876 |
| BtsIMutI | CAGTG | 4 cut(s) | 554, 663, 876, 1347 |
| CaiI | CAGNNNCTG | 1 cut(s) | 662 |
| CciNI | GCGGCCGC | 1 cut(s) | 1005 |
| CfoI | GCGC | 6 cut(s) | 442, 558, 655, 822, 1115, 1150 |
| Cfr10I | RCCGGY | 5 cut(s) | 493, 502, 1141, 1171, 1356 |
| Cfr13I | GGNCC | 4 cut(s) | 612, 613, 1051, 1306 |
| ClaI | ATCGAT | 1 cut(s) | 48 |
| CseI | GACGC | 4 cut(s) | 215, 316, 737, 1122 |
| Csp6I | GTAC | 3 cut(s) | 709, 1182, 1326 |
| CspAI | ACCGGT | 1 cut(s) | 493 |
| CviAII | CATG | 5 cut(s) | 223, 259, 905, 1138, 1394 |
| CviQI | GTAC | 3 cut(s) | 709, 1182, 1326 |
| DdeI | CTNAG | 7 cut(s) | 317, 576, 666, 792, 987, 1059, 1158 |
| DinI | GGCGCC | 3 cut(s) | 654, 821, 1114 |
| DpnI | GATC | 4 cut(s) | 153, 228, 239, 945 |
| DpnII | GATC | 4 cut(s) | 151, 226, 237, 943 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1341 |
| EaeI | YGGCCR | 4 cut(s) | 825, 873, 1005, 1351 |
| EagI | CGGCCG | 1 cut(s) | 1005 |
| Eam1104I | CTCTTC | 1 cut(s) | 947 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1341 |
| EarI | CTCTTC | 1 cut(s) | 947 |
| EciI | GGCGGA | 6 cut(s) | 521, 1052, 1158, 1259, 1334, 1374 |
| Ecl136II | GAGCTC | 1 cut(s) | 748 |
| EclXI | CGGCCG | 1 cut(s) | 1005 |
| Eco130I | CCWWGG | 3 cut(s) | 222, 648, 828 |
| Eco147I | AGGCCT | 1 cut(s) | 520 |
| Eco24I | GRGCYC | 2 cut(s) | 616, 750 |
| Eco31I | GGTCTC | 2 cut(s) | 596, 773 |
| Eco52I | CGGCCG | 1 cut(s) | 1005 |
| Eco53kI | GAGCTC | 1 cut(s) | 748 |
| Eco57I | CTGAAG | 2 cut(s) | 44, 1121 |
| Eco88I | CYCGRG | 1 cut(s) | 1213 |
| EcoICRI | GAGCTC | 1 cut(s) | 748 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 827, 938, 1058 |
| EcoO109I | RGGNCCY | 2 cut(s) | 612, 1051 |
| EcoRII | CCWGG | 6 cut(s) | 184, 527, 690, 731, 822, 978 |
| EcoT14I | CCWWGG | 3 cut(s) | 222, 648, 828 |
| EcoT38I | GRGCYC | 2 cut(s) | 616, 750 |
| EgeI | GGCGCC | 3 cut(s) | 654, 821, 1114 |
| EheI | GGCGCC | 3 cut(s) | 654, 821, 1114 |
| ErhI | CCWWGG | 3 cut(s) | 222, 648, 828 |
| Esp3I | CGTCTC | 1 cut(s) | 299 |
| FaeI | CATG | 5 cut(s) | 226, 262, 908, 1141, 1397 |
| FaqI | GGGAC | 5 cut(s) | 899, 916, 1172, 1270, 1329 |
| FatI | CATG | 5 cut(s) | 222, 258, 904, 1137, 1393 |
| FauI | CCCGC | 7 cut(s) | 407, 623, 688, 735, 876, 983, 1198 |
| FokI | GGATG | 5 cut(s) | 605, 821, 1259, 1334, 1368 |
| FriOI | GRGCYC | 2 cut(s) | 616, 750 |
| FspBI | CTAG | 4 cut(s) | 111, 633, 959, 1074 |
| GlaI | GCGC | 6 cut(s) | 441, 557, 654, 821, 1114, 1149 |
| GsaI | CCCAGC | 6 cut(s) | 286, 785, 1258, 1296, 1436, 1445 |
| GsuI | CTGGAG | 3 cut(s) | 755, 938, 1112 |
| HaeII | RGCGCY | 3 cut(s) | 656, 823, 1116 |
| HaeIII | GGCC | 8 cut(s) | 520, 614, 827, 875, 1007, 1052, 1307, 1353 |
| HgaI | GACGC | 4 cut(s) | 215, 316, 737, 1122 |
| HhaI | GCGC | 6 cut(s) | 442, 558, 655, 822, 1115, 1150 |
| Hin1I | GRCGYC | 5 cut(s) | 653, 729, 820, 1113, 1133 |
| Hin1II | CATG | 5 cut(s) | 226, 262, 908, 1141, 1397 |
| Hin6I | GCGC | 6 cut(s) | 440, 556, 653, 820, 1113, 1148 |
| HinP1I | GCGC | 6 cut(s) | 440, 556, 653, 820, 1113, 1148 |
| HindIII | AAGCTT | 1 cut(s) | 639 |
| HinfI | GANTC | 7 cut(s) | 163, 569, 695, 1019, 1250, 1261, 1336 |
| HphI | GGTGA | 4 cut(s) | 386, 694, 961, 977 |
| Hpy166II | GTNNAC | 1 cut(s) | 298 |
| Hpy188I | TCNGA | 5 cut(s) | 63, 271, 328, 1279, 1363 |
| Hpy188III | TCNNGA | 5 cut(s) | 167, 250, 395, 772, 1091 |
| Hpy8I | GTNNAC | 1 cut(s) | 298 |
| Hpy99I | CGWCG | 2 cut(s) | 209, 392 |
| HpyAV | CCTTC | 8 cut(s) | 68, 478, 581, 622, 1042, 1123, 1394, 1409 |
| HpyCH4III | ACNGT | 3 cut(s) | 292, 998, 1186 |
| HpyCH4IV | ACGT | 3 cut(s) | 171, 888, 927 |
| HpyCH4V | TGCA | 3 cut(s) | 434, 499, 1235 |
| HpyF3I | CTNAG | 7 cut(s) | 317, 576, 666, 792, 987, 1059, 1158 |
| HpySE526I | ACGT | 3 cut(s) | 171, 888, 927 |
| Hsp92I | GRCGYC | 5 cut(s) | 653, 729, 820, 1113, 1133 |
| Hsp92II | CATG | 5 cut(s) | 226, 262, 908, 1141, 1397 |
| HspAI | GCGC | 6 cut(s) | 440, 556, 653, 820, 1113, 1148 |
| KasI | GGCGCC | 3 cut(s) | 652, 819, 1112 |
| KroI | GCCGGC | 2 cut(s) | 502, 1171 |
| KroNI | GCCGGC | 2 cut(s) | 504, 1173 |
| Kzo9I | GATC | 4 cut(s) | 151, 226, 237, 943 |
| LmnI | GCTCC | 4 cut(s) | 745, 753, 919, 1171 |
| Lsp1109I | GCAGC | 8 cut(s) | 5, 369, 418, 511, 511, 649, 1076, 1431 |
| LweI | GCATC | 5 cut(s) | 586, 666, 832, 1086, 1399 |
| MaeI | CTAG | 4 cut(s) | 111, 633, 959, 1074 |
| MaeII | ACGT | 3 cut(s) | 171, 888, 927 |
| MaeIII | GTNAC | 4 cut(s) | 127, 167, 188, 374 |
| MalI | GATC | 4 cut(s) | 153, 228, 239, 945 |
| MbiI | CCGCTC | 2 cut(s) | 742, 1193 |
| MboI | GATC | 4 cut(s) | 151, 226, 237, 943 |
| MboII | GAAGA | 5 cut(s) | 265, 596, 637, 767, 964 |
| MhlI | GDGCHC | 4 cut(s) | 481, 616, 750, 1081 |
| MlsI | TGGCCA | 1 cut(s) | 827 |
| MluCI | AATT | 2 cut(s) | 9, 244 |
| MluNI | TGGCCA | 1 cut(s) | 827 |
| Mly113I | GGCGCC | 3 cut(s) | 653, 820, 1113 |
| MlyI | GAGTC | 6 cut(s) | 157, 563, 1028, 1244, 1255, 1330 |
| MmeI | TCCRAC | 1 cut(s) | 1257 |
| Mox20I | TGGCCA | 1 cut(s) | 827 |
| MroNI | GCCGGC | 2 cut(s) | 502, 1171 |
| MscI | TGGCCA | 1 cut(s) | 827 |
| MseI | TTAA | 1 cut(s) | 515 |
| MslI | CAYNNNNRTG | 2 cut(s) | 369, 539 |
| Msp20I | TGGCCA | 1 cut(s) | 827 |
| MspA1I | CMGCKG | 4 cut(s) | 18, 575, 1013, 1258 |
| Mva1269I | GAATGC | 1 cut(s) | 856 |
| MvaI | CCWGG | 6 cut(s) | 186, 529, 692, 733, 824, 980 |
| MvnI | CGCG | 7 cut(s) | 204, 440, 683, 707, 848, 858, 1148 |
| NaeI | GCCGGC | 2 cut(s) | 504, 1173 |
| NarI | GGCGCC | 3 cut(s) | 653, 820, 1113 |
| NciI | CCSGG | 5 cut(s) | 133, 302, 752, 1241, 1316 |
| NcoI | CCATGG | 1 cut(s) | 222 |
| NdeII | GATC | 4 cut(s) | 151, 226, 237, 943 |
| NgoMIV | GCCGGC | 2 cut(s) | 502, 1171 |
| NlaIII | CATG | 5 cut(s) | 226, 262, 908, 1141, 1397 |
| NlaIV | GGNNCC | 8 cut(s) | 333, 613, 614, 654, 821, 995, 1114, 1207 |
| NmeAIII | GCCGAG | 3 cut(s) | 47, 259, 1448 |
| NmuCI | GTSAC | 2 cut(s) | 167, 374 |
| NotI | GCGGCCGC | 1 cut(s) | 1005 |
| OliI | CACNNNNGTG | 1 cut(s) | 539 |
| PceI | AGGCCT | 1 cut(s) | 520 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 163, 384 |
| PctI | GAATGC | 1 cut(s) | 856 |
| PdiI | GCCGGC | 2 cut(s) | 504, 1173 |
| PfeI | GAWTC | 1 cut(s) | 695 |
| Pfl23II | CGTACG | 1 cut(s) | 708 |
| PflFI | GACNNNGTC | 1 cut(s) | 905 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1122 |
| PfoI | TCCNGGA | 1 cut(s) | 750 |
| PinAI | ACCGGT | 1 cut(s) | 493 |
| PleI | GAGTC | 6 cut(s) | 157, 563, 1027, 1244, 1255, 1330 |
| PluTI | GGCGCC | 3 cut(s) | 656, 823, 1116 |
| PpsI | GAGTC | 6 cut(s) | 157, 563, 1027, 1244, 1255, 1330 |
| Psp124BI | GAGCTC | 1 cut(s) | 750 |
| Psp6I | CCWGG | 6 cut(s) | 184, 527, 690, 731, 822, 978 |
| PspFI | CCCAGC | 6 cut(s) | 282, 781, 1254, 1292, 1432, 1441 |
| PspGI | CCWGG | 6 cut(s) | 184, 527, 690, 731, 822, 978 |
| PspLI | CGTACG | 1 cut(s) | 708 |
| PspN4I | GGNNCC | 8 cut(s) | 333, 613, 614, 654, 821, 995, 1114, 1207 |
| PspOMI | GGGCCC | 1 cut(s) | 612 |
| PspPI | GGNCC | 4 cut(s) | 612, 613, 1051, 1306 |
| PstNI | CAGNNNCTG | 1 cut(s) | 662 |
| PsyI | GACNNNGTC | 1 cut(s) | 905 |
| RsaI | GTAC | 3 cut(s) | 710, 1183, 1327 |
| RsaNI | GTAC | 3 cut(s) | 709, 1182, 1326 |
| RseI | CAYNNNNRTG | 2 cut(s) | 369, 539 |
| SacI | GAGCTC | 1 cut(s) | 750 |
| SaqAI | TTAA | 1 cut(s) | 515 |
| Sau3AI | GATC | 4 cut(s) | 151, 226, 237, 943 |
| Sau96I | GGNCC | 4 cut(s) | 612, 613, 1051, 1306 |
| SchI | GAGTC | 6 cut(s) | 157, 563, 1028, 1244, 1255, 1330 |
| SduI | GDGCHC | 4 cut(s) | 481, 616, 750, 1081 |
| SfaNI | GCATC | 5 cut(s) | 586, 666, 832, 1086, 1399 |
| SfcI | CTRYAG | 1 cut(s) | 938 |
| SfoI | GGCGCC | 3 cut(s) | 654, 821, 1114 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 369, 539 |
| SmlI | CTYRAG | 1 cut(s) | 1194 |
| SmoI | CTYRAG | 1 cut(s) | 1194 |
| SpeI | ACTAGT | 1 cut(s) | 110 |
| Sse9I | AATT | 2 cut(s) | 9, 244 |
| SseBI | AGGCCT | 1 cut(s) | 520 |
| SspDI | GGCGCC | 3 cut(s) | 652, 819, 1112 |
| SspMI | CTAG | 4 cut(s) | 111, 633, 959, 1074 |
| SstI | GAGCTC | 1 cut(s) | 750 |
| StuI | AGGCCT | 1 cut(s) | 520 |
| StyI | CCWWGG | 3 cut(s) | 222, 648, 828 |
| TaaI | ACNGT | 3 cut(s) | 292, 998, 1186 |
| TaiI | ACGT | 3 cut(s) | 174, 891, 930 |
| TaqI | TCGA | 5 cut(s) | 48, 150, 240, 762, 1398 |
| TasI | AATT | 2 cut(s) | 9, 244 |
| TfiI | GAWTC | 1 cut(s) | 695 |
| Tru1I | TTAA | 1 cut(s) | 515 |
| Tru9I | TTAA | 1 cut(s) | 515 |
| TscAI | CASTG | 4 cut(s) | 554, 663, 876, 1354 |
| TseFI | GTSAC | 2 cut(s) | 167, 374 |
| TseI | GCWGC | 8 cut(s) | 18, 382, 431, 499, 524, 662, 1064, 1419 |
| Tsp45I | GTSAC | 2 cut(s) | 167, 374 |
| TspDTI | ATGAA | 1 cut(s) | 687 |
| TspGWI | ACGGA | 1 cut(s) | 910 |
| TspRI | CASTG | 4 cut(s) | 554, 663, 876, 1354 |
| Tth111I | GACNNNGTC | 1 cut(s) | 905 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1122 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 827, 938, 1058 |
| XapI | RAATTY | 2 cut(s) | 9, 244 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 365, 655 |
| XspI | CTAG | 4 cut(s) | 111, 633, 959, 1074 |