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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 364 |
| AccBSI | CCGCTC | 4 cut(s) | 454, 667, 701, 865 |
| AccII | CGCG | 3 cut(s) | 487, 896, 906 |
| AclWI | GGATC | 1 cut(s) | 942 |
| AcoI | YGGCCR | 3 cut(s) | 675, 852, 921 |
| AcsI | RAATTY | 1 cut(s) | 22 |
| AcuI | CTGAAG | 1 cut(s) | 499 |
| AcyI | GRCGYC | 4 cut(s) | 365, 569, 767, 900 |
| AfaI | GTAC | 1 cut(s) | 401 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 106, 183, 274, 648, 787, 930 |
| AflIII | ACRYGT | 1 cut(s) | 952 |
| AjnI | CCWGG | 2 cut(s) | 182, 381 |
| AleI | CACNNNNGTG | 1 cut(s) | 147 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 416, 448 |
| AluBI | AGCT | 5 cut(s) | 332, 519, 598, 796, 913 |
| AluI | AGCT | 5 cut(s) | 332, 519, 598, 796, 913 |
| Alw21I | GWGCWC | 2 cut(s) | 78, 600 |
| Alw26I | GTCTC | 6 cut(s) | 77, 144, 623, 821, 841, 961 |
| Alw44I | GTGCAC | 1 cut(s) | 74 |
| AlwI | GGATC | 1 cut(s) | 942 |
| AoxI | GGCC | 8 cut(s) | 33, 57, 321, 639, 675, 837, 852, 921 |
| ApaLI | GTGCAC | 1 cut(s) | 74 |
| ApeKI | GCWGC | 5 cut(s) | 218, 256, 332, 577, 775 |
| ApoI | RAATTY | 1 cut(s) | 22 |
| AspLEI | GCGC | 3 cut(s) | 238, 367, 489 |
| AspS9I | GGNCC | 5 cut(s) | 58, 213, 304, 322, 424 |
| AsuC2I | CCSGG | 3 cut(s) | 80, 428, 781 |
| AsuHPI | GGTGA | 4 cut(s) | 130, 134, 161, 200 |
| AvaII | GGWCC | 3 cut(s) | 213, 304, 424 |
| BaeGI | GKGCMC | 1 cut(s) | 78 |
| BalI | TGGCCA | 1 cut(s) | 677 |
| BanI | GGYRCC | 1 cut(s) | 364 |
| BanII | GRGCYC | 2 cut(s) | 600, 719 |
| Bbv12I | GWGCWC | 2 cut(s) | 78, 600 |
| BbvI | GCAGC | 5 cut(s) | 205, 268, 319, 589, 787 |
| BccI | CCATC | 4 cut(s) | 115, 149, 450, 932 |
| BceAI | ACGGC | 1 cut(s) | 510 |
| BciT130I | CCWGG | 2 cut(s) | 184, 383 |
| BcnI | CCSGG | 3 cut(s) | 80, 428, 781 |
| BcoDI | GTCTC | 6 cut(s) | 77, 144, 623, 821, 841, 961 |
| BfoI | RGCGCY | 2 cut(s) | 239, 368 |
| Bme1390I | CCNGG | 5 cut(s) | 80, 184, 383, 428, 781 |
| Bme18I | GGWCC | 3 cut(s) | 213, 304, 424 |
| BmgT120I | GGNCC | 5 cut(s) | 58, 213, 304, 322, 424 |
| BmiI | GGNNCC | 4 cut(s) | 111, 305, 366, 425 |
| BmrFI | CCNGG | 5 cut(s) | 80, 184, 383, 428, 781 |
| BmsI | GCATC | 1 cut(s) | 117 |
| BpmI | CTGGAG | 4 cut(s) | 260, 605, 803, 959 |
| Bpu10I | CCTNAGC | 2 cut(s) | 599, 797 |
| BpuMI | CCSGG | 3 cut(s) | 80, 428, 781 |
| BsaHI | GRCGYC | 4 cut(s) | 365, 569, 767, 900 |
| BsaI | GGTCTC | 2 cut(s) | 623, 821 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 23, 53, 371, 401 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 106, 183, 274, 648, 787, 930 |
| Bse1I | ACTGG | 5 cut(s) | 100, 136, 197, 855, 876 |
| BseBI | CCWGG | 2 cut(s) | 184, 383 |
| BseGI | GGATG | 1 cut(s) | 924 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 106, 183, 274, 648, 787, 930 |
| BseMII | CTCAG | 1 cut(s) | 613 |
| BseNI | ACTGG | 5 cut(s) | 100, 136, 197, 855, 876 |
| BseSI | GKGCMC | 1 cut(s) | 78 |
| BseXI | GCAGC | 5 cut(s) | 205, 268, 319, 589, 787 |
| BseYI | CCCAGC | 3 cut(s) | 60, 457, 704 |
| Bsh1236I | CGCG | 3 cut(s) | 487, 896, 906 |
| BshFI | GGCC | 8 cut(s) | 35, 59, 323, 641, 677, 839, 854, 923 |
| BshNI | GGYRCC | 1 cut(s) | 364 |
| BsiHKAI | GWGCWC | 2 cut(s) | 78, 600 |
| BsiSI | CCGG | 5 cut(s) | 80, 113, 427, 781, 928 |
| BslFI | GGGAC | 2 cut(s) | 437, 882 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 106, 183, 274, 648, 787, 930 |
| BsmAI | GTCTC | 6 cut(s) | 77, 144, 623, 821, 841, 961 |
| BsmBI | CGTCTC | 1 cut(s) | 77 |
| BsmFI | GGGAC | 2 cut(s) | 437, 882 |
| BsnI | GGCC | 8 cut(s) | 35, 59, 323, 641, 677, 839, 854, 923 |
| Bso31I | GGTCTC | 2 cut(s) | 623, 821 |
| Bsp1286I | GDGCHC | 3 cut(s) | 78, 600, 719 |
| Bsp143I | GATC | 1 cut(s) | 934 |
| BspANI | GGCC | 8 cut(s) | 35, 59, 323, 641, 677, 839, 854, 923 |
| BspCNI | CTCAG | 1 cut(s) | 612 |
| BspFNI | CGCG | 3 cut(s) | 487, 896, 906 |
| BspHI | TCATGA | 1 cut(s) | 411 |
| BspLI | GGNNCC | 4 cut(s) | 111, 305, 366, 425 |
| BspPI | GGATC | 1 cut(s) | 942 |
| BspQI | GCTCTTC | 2 cut(s) | 588, 786 |
| BspT107I | GGYRCC | 1 cut(s) | 364 |
| BspTNI | GGTCTC | 2 cut(s) | 623, 821 |
| BsrBI | CCGCTC | 4 cut(s) | 454, 667, 701, 865 |
| BsrI | ACTGG | 5 cut(s) | 100, 136, 197, 855, 876 |
| BssMI | GATC | 1 cut(s) | 934 |
| BssNI | GRCGYC | 4 cut(s) | 365, 569, 767, 900 |
| BssT1I | CCWWGG | 4 cut(s) | 145, 642, 678, 840 |
| Bst2UI | CCWGG | 2 cut(s) | 184, 383 |
| Bst4CI | ACNGT | 1 cut(s) | 70 |
| Bst6I | CTCTTC | 4 cut(s) | 273, 282, 588, 786 |
| BstACI | GRCGYC | 4 cut(s) | 365, 569, 767, 900 |
| BstC8I | GCNNGC | 9 cut(s) | 54, 204, 223, 369, 478, 654, 675, 904, 911 |
| BstDEI | CTNAG | 4 cut(s) | 573, 599, 771, 797 |
| BstDSI | CCRYGG | 1 cut(s) | 904 |
| BstF5I | GGATG | 1 cut(s) | 924 |
| BstFNI | CGCG | 3 cut(s) | 487, 896, 906 |
| BstH2I | RGCGCY | 2 cut(s) | 239, 368 |
| BstHHI | GCGC | 3 cut(s) | 238, 367, 489 |
| BstKTI | GATC | 1 cut(s) | 937 |
| BstMAI | GTCTC | 6 cut(s) | 77, 144, 623, 821, 841, 961 |
| BstMBI | GATC | 1 cut(s) | 934 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 41, 199, 329, 401, 486 |
| BstNI | CCWGG | 2 cut(s) | 184, 383 |
| BstNSI | RCATGY | 1 cut(s) | 956 |
| BstSCI | CCNGG | 5 cut(s) | 78, 182, 381, 426, 779 |
| BstSLI | GKGCMC | 1 cut(s) | 78 |
| BstUI | CGCG | 3 cut(s) | 487, 896, 906 |
| BstV1I | GCAGC | 5 cut(s) | 205, 268, 319, 589, 787 |
| BstX2I | RGATCY | 1 cut(s) | 934 |
| BstYI | RGATCY | 1 cut(s) | 934 |
| BsuRI | GGCC | 8 cut(s) | 35, 59, 323, 641, 677, 839, 854, 923 |
| BtgI | CCRYGG | 1 cut(s) | 904 |
| BtgZI | GCGATG | 1 cut(s) | 140 |
| BtsCI | GGATG | 1 cut(s) | 924 |
| BtsI | GCAGTG | 1 cut(s) | 354 |
| BtsIMutI | CAGTG | 3 cut(s) | 204, 354, 382 |
| Cac8I | GCNNGC | 9 cut(s) | 54, 204, 223, 369, 478, 654, 675, 904, 911 |
| CciI | TCATGA | 1 cut(s) | 411 |
| CfoI | GCGC | 3 cut(s) | 238, 367, 489 |
| Cfr13I | GGNCC | 5 cut(s) | 58, 213, 304, 322, 424 |
| Cfr42I | CCGCGG | 1 cut(s) | 907 |
| CseI | GACGC | 4 cut(s) | 324, 558, 756, 908 |
| Csp6I | GTAC | 1 cut(s) | 400 |
| CviAII | CATG | 3 cut(s) | 37, 412, 953 |
| CviQI | GTAC | 1 cut(s) | 400 |
| DdeI | CTNAG | 4 cut(s) | 573, 599, 771, 797 |
| DinI | GGCGCC | 1 cut(s) | 366 |
| DpnI | GATC | 1 cut(s) | 936 |
| DpnII | GATC | 1 cut(s) | 934 |
| EaeI | YGGCCR | 3 cut(s) | 675, 852, 921 |
| Eam1104I | CTCTTC | 4 cut(s) | 273, 282, 588, 786 |
| EarI | CTCTTC | 4 cut(s) | 273, 282, 588, 786 |
| EciI | GGCGGA | 8 cut(s) | 26, 296, 368, 650, 671, 698, 848, 896 |
| Ecl136II | GAGCTC | 1 cut(s) | 598 |
| Eco130I | CCWWGG | 4 cut(s) | 145, 642, 678, 840 |
| Eco24I | GRGCYC | 2 cut(s) | 600, 719 |
| Eco31I | GGTCTC | 2 cut(s) | 623, 821 |
| Eco32I | GATATC | 1 cut(s) | 537 |
| Eco47I | GGWCC | 3 cut(s) | 213, 304, 424 |
| Eco53kI | GAGCTC | 1 cut(s) | 598 |
| Eco57I | CTGAAG | 1 cut(s) | 499 |
| EcoICRI | GAGCTC | 1 cut(s) | 598 |
| EcoRII | CCWGG | 2 cut(s) | 182, 381 |
| EcoRV | GATATC | 1 cut(s) | 537 |
| EcoT14I | CCWWGG | 4 cut(s) | 145, 642, 678, 840 |
| EcoT38I | GRGCYC | 2 cut(s) | 600, 719 |
| EgeI | GGCGCC | 1 cut(s) | 366 |
| EheI | GGCGCC | 1 cut(s) | 366 |
| ErhI | CCWWGG | 4 cut(s) | 145, 642, 678, 840 |
| Esp3I | CGTCTC | 1 cut(s) | 77 |
| FaeI | CATG | 3 cut(s) | 40, 415, 956 |
| FaiI | YATR | 8 cut(s) | 38, 42, 413, 482, 557, 696, 755, 954 |
| FaqI | GGGAC | 2 cut(s) | 437, 882 |
| FatI | CATG | 3 cut(s) | 36, 411, 952 |
| FokI | GGATG | 1 cut(s) | 911 |
| FriOI | GRGCYC | 2 cut(s) | 600, 719 |
| GlaI | GCGC | 3 cut(s) | 237, 366, 488 |
| GsaI | CCCAGC | 3 cut(s) | 64, 461, 708 |
| GsuI | CTGGAG | 4 cut(s) | 260, 605, 803, 959 |
| HaeII | RGCGCY | 2 cut(s) | 239, 368 |
| HaeIII | GGCC | 8 cut(s) | 35, 59, 323, 641, 677, 839, 854, 923 |
| HapII | CCGG | 5 cut(s) | 80, 113, 427, 781, 928 |
| HgaI | GACGC | 4 cut(s) | 324, 558, 756, 908 |
| HhaI | GCGC | 3 cut(s) | 238, 367, 489 |
| Hin1I | GRCGYC | 4 cut(s) | 365, 569, 767, 900 |
| Hin1II | CATG | 3 cut(s) | 40, 415, 956 |
| Hin6I | GCGC | 3 cut(s) | 236, 365, 487 |
| HinP1I | GCGC | 3 cut(s) | 236, 365, 487 |
| HindIII | AAGCTT | 1 cut(s) | 911 |
| HinfI | GANTC | 3 cut(s) | 179, 263, 386 |
| HpaII | CCGG | 5 cut(s) | 80, 113, 427, 781, 928 |
| HphI | GGTGA | 4 cut(s) | 130, 134, 161, 200 |
| Hpy166II | GTNNAC | 1 cut(s) | 76 |
| Hpy188I | TCNGA | 5 cut(s) | 106, 534, 585, 614, 812 |
| Hpy188III | TCNNGA | 4 cut(s) | 412, 622, 820, 938 |
| Hpy8I | GTNNAC | 1 cut(s) | 76 |
| Hpy99I | CGWCG | 4 cut(s) | 211, 255, 340, 496 |
| HpyAV | CCTTC | 5 cut(s) | 313, 334, 400, 413, 523 |
| HpyCH4III | ACNGT | 1 cut(s) | 70 |
| HpyCH4IV | ACGT | 2 cut(s) | 86, 250 |
| HpyCH4V | TGCA | 2 cut(s) | 76, 347 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 41, 199, 329, 401, 486 |
| HpyF3I | CTNAG | 4 cut(s) | 573, 599, 771, 797 |
| HpySE526I | ACGT | 2 cut(s) | 86, 250 |
| Hsp92I | GRCGYC | 4 cut(s) | 365, 569, 767, 900 |
| Hsp92II | CATG | 3 cut(s) | 40, 415, 956 |
| HspAI | GCGC | 3 cut(s) | 236, 365, 487 |
| KasI | GGCGCC | 1 cut(s) | 364 |
| KspI | CCGCGG | 1 cut(s) | 907 |
| Kzo9I | GATC | 1 cut(s) | 934 |
| LguI | GCTCTTC | 2 cut(s) | 588, 786 |
| LmnI | GCTCC | 2 cut(s) | 698, 967 |
| Lsp1109I | GCAGC | 5 cut(s) | 205, 268, 319, 589, 787 |
| LweI | GCATC | 1 cut(s) | 117 |
| MaeII | ACGT | 2 cut(s) | 86, 250 |
| MaeIII | GTNAC | 4 cut(s) | 377, 546, 689, 744 |
| MalI | GATC | 1 cut(s) | 936 |
| MbiI | CCGCTC | 4 cut(s) | 454, 667, 701, 865 |
| MboI | GATC | 1 cut(s) | 934 |
| MboII | GAAGA | 6 cut(s) | 164, 290, 296, 299, 605, 803 |
| MfeI | CAATTG | 1 cut(s) | 498 |
| MflI | RGATCY | 1 cut(s) | 934 |
| MhlI | GDGCHC | 3 cut(s) | 78, 600, 719 |
| MlsI | TGGCCA | 1 cut(s) | 677 |
| MluCI | AATT | 2 cut(s) | 22, 498 |
| MluNI | TGGCCA | 1 cut(s) | 677 |
| Mly113I | GGCGCC | 1 cut(s) | 365 |
| MlyI | GAGTC | 3 cut(s) | 188, 257, 380 |
| MmeI | TCCRAC | 1 cut(s) | 945 |
| Mox20I | TGGCCA | 1 cut(s) | 677 |
| MscI | TGGCCA | 1 cut(s) | 677 |
| MseI | TTAA | 1 cut(s) | 915 |
| MslI | CAYNNNNRTG | 2 cut(s) | 147, 447 |
| Msp20I | TGGCCA | 1 cut(s) | 677 |
| MspA1I | CMGCKG | 3 cut(s) | 218, 371, 906 |
| MspI | CCGG | 5 cut(s) | 80, 113, 427, 781, 928 |
| MspR9I | CCNGG | 5 cut(s) | 80, 184, 383, 428, 781 |
| MunI | CAATTG | 1 cut(s) | 498 |
| MvaI | CCWGG | 2 cut(s) | 184, 383 |
| MvnI | CGCG | 3 cut(s) | 487, 896, 906 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 41, 199, 329, 401, 486 |
| NarI | GGCGCC | 1 cut(s) | 365 |
| NciI | CCSGG | 3 cut(s) | 80, 428, 781 |
| NdeII | GATC | 1 cut(s) | 934 |
| NlaIII | CATG | 3 cut(s) | 40, 415, 956 |
| NlaIV | GGNNCC | 4 cut(s) | 111, 305, 366, 425 |
| NmeAIII | GCCGAG | 6 cut(s) | 70, 298, 421, 500, 698, 880 |
| NmuCI | GTSAC | 2 cut(s) | 377, 689 |
| NspI | RCATGY | 1 cut(s) | 956 |
| OliI | CACNNNNGTG | 1 cut(s) | 147 |
| PagI | TCATGA | 1 cut(s) | 411 |
| PciI | ACATGT | 1 cut(s) | 952 |
| PciSI | GCTCTTC | 2 cut(s) | 588, 786 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 558, 756 |
| PleI | GAGTC | 3 cut(s) | 187, 257, 380 |
| PluTI | GGCGCC | 1 cut(s) | 368 |
| PpsI | GAGTC | 3 cut(s) | 187, 257, 380 |
| PscI | ACATGT | 1 cut(s) | 952 |
| Psp124BI | GAGCTC | 1 cut(s) | 600 |
| Psp6I | CCWGG | 2 cut(s) | 182, 381 |
| PspFI | CCCAGC | 3 cut(s) | 60, 457, 704 |
| PspGI | CCWGG | 2 cut(s) | 182, 381 |
| PspN4I | GGNNCC | 4 cut(s) | 111, 305, 366, 425 |
| PspPI | GGNCC | 5 cut(s) | 58, 213, 304, 322, 424 |
| PsuI | RGATCY | 1 cut(s) | 934 |
| RsaI | GTAC | 1 cut(s) | 401 |
| RsaNI | GTAC | 1 cut(s) | 400 |
| RseI | CAYNNNNRTG | 2 cut(s) | 147, 447 |
| SacI | GAGCTC | 1 cut(s) | 600 |
| SacII | CCGCGG | 1 cut(s) | 907 |
| SapI | GCTCTTC | 2 cut(s) | 588, 786 |
| SaqAI | TTAA | 1 cut(s) | 915 |
| Sau3AI | GATC | 1 cut(s) | 934 |
| Sau96I | GGNCC | 5 cut(s) | 58, 213, 304, 322, 424 |
| SchI | GAGTC | 3 cut(s) | 188, 257, 380 |
| ScrFI | CCNGG | 5 cut(s) | 80, 184, 383, 428, 781 |
| SduI | GDGCHC | 3 cut(s) | 78, 600, 719 |
| SfaNI | GCATC | 1 cut(s) | 117 |
| SfoI | GGCGCC | 1 cut(s) | 366 |
| Sfr303I | CCGCGG | 1 cut(s) | 907 |
| SgrBI | CCGCGG | 1 cut(s) | 907 |
| SinI | GGWCC | 3 cut(s) | 213, 304, 424 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 147, 447 |
| Sse9I | AATT | 2 cut(s) | 22, 498 |
| SspDI | GGCGCC | 1 cut(s) | 364 |
| SstI | GAGCTC | 1 cut(s) | 600 |
| StyD4I | CCNGG | 5 cut(s) | 78, 182, 381, 426, 779 |
| StyI | CCWWGG | 4 cut(s) | 145, 642, 678, 840 |
| TaaI | ACNGT | 1 cut(s) | 70 |
| TaiI | ACGT | 2 cut(s) | 89, 253 |
| TaqI | TCGA | 3 cut(s) | 338, 663, 861 |
| TasI | AATT | 2 cut(s) | 22, 498 |
| TauI | GCSGC | 9 cut(s) | 59, 133, 196, 457, 569, 704, 767, 909, 923 |
| Tru1I | TTAA | 1 cut(s) | 915 |
| Tru9I | TTAA | 1 cut(s) | 915 |
| TscAI | CASTG | 3 cut(s) | 204, 354, 382 |
| TseFI | GTSAC | 2 cut(s) | 377, 689 |
| TseI | GCWGC | 5 cut(s) | 218, 256, 332, 577, 775 |
| Tsp45I | GTSAC | 2 cut(s) | 377, 689 |
| TspDTI | ATGAA | 2 cut(s) | 400, 963 |
| TspRI | CASTG | 3 cut(s) | 204, 354, 382 |
| VneI | GTGCAC | 1 cut(s) | 74 |
| VpaK11BI | GGWCC | 3 cut(s) | 213, 304, 424 |
| XapI | RAATTY | 1 cut(s) | 22 |
| XceI | RCATGY | 1 cut(s) | 956 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 143, 649, 847 |