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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 431 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 632 |
| AccBSI | CCGCTC | 1 cut(s) | 438 |
| AccII | CGCG | 1 cut(s) | 248 |
| AclWI | GGATC | 3 cut(s) | 192, 211, 595 |
| AcoI | YGGCCR | 1 cut(s) | 66 |
| AcuI | CTGAAG | 1 cut(s) | 425 |
| AcyI | GRCGYC | 1 cut(s) | 566 |
| AfaI | GTAC | 1 cut(s) | 347 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 123, 226, 307, 632 |
| AgsI | TTSAA | 2 cut(s) | 331, 509 |
| AleI | CACNNNNGTG | 1 cut(s) | 317 |
| AluBI | AGCT | 9 cut(s) | 22, 43, 106, 157, 190, 283, 484, 603, 663 |
| AluI | AGCT | 9 cut(s) | 22, 43, 106, 157, 190, 283, 484, 603, 663 |
| Alw21I | GWGCWC | 1 cut(s) | 655 |
| Alw26I | GTCTC | 1 cut(s) | 517 |
| AlwI | GGATC | 3 cut(s) | 192, 211, 595 |
| Ama87I | CYCGRG | 1 cut(s) | 543 |
| AoxI | GGCC | 3 cut(s) | 30, 66, 375 |
| ApeKI | GCWGC | 4 cut(s) | 99, 223, 368, 533 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 589, 621 |
| AsuC2I | CCSGG | 1 cut(s) | 379 |
| AsuHPI | GGTGA | 2 cut(s) | 281, 304 |
| AvaI | CYCGRG | 1 cut(s) | 543 |
| BalI | TGGCCA | 1 cut(s) | 68 |
| BauI | CACGAG | 1 cut(s) | 516 |
| Bbv12I | GWGCWC | 1 cut(s) | 655 |
| BbvI | GCAGC | 4 cut(s) | 111, 235, 355, 520 |
| BccI | CCATC | 3 cut(s) | 298, 355, 634 |
| BceAI | ACGGC | 3 cut(s) | 101, 221, 302 |
| BclI | TGATCA | 1 cut(s) | 592 |
| BcnI | CCSGG | 1 cut(s) | 379 |
| BcoDI | GTCTC | 1 cut(s) | 517 |
| BfaI | CTAG | 2 cut(s) | 158, 395 |
| BfmI | CTRYAG | 1 cut(s) | 221 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 323 |
| BisI | GCNGC | 6 cut(s) | 87, 100, 195, 224, 369, 534 |
| BlsI | GCNGC | 6 cut(s) | 88, 101, 196, 225, 370, 535 |
| Bme1390I | CCNGG | 1 cut(s) | 379 |
| BmeT110I | CYCGRG | 1 cut(s) | 543 |
| BmiI | GGNNCC | 1 cut(s) | 299 |
| BmrFI | CCNGG | 1 cut(s) | 379 |
| BmrI | ACTGGG | 1 cut(s) | 436 |
| BmsI | GCATC | 1 cut(s) | 82 |
| BmuI | ACTGGG | 1 cut(s) | 436 |
| Bpu10I | CCTNAGC | 1 cut(s) | 439 |
| BpuMI | CCSGG | 1 cut(s) | 379 |
| BsaBI | GATNNNNATC | 1 cut(s) | 215 |
| BsaHI | GRCGYC | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 5 cut(s) | 33, 246, 318, 378, 583 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 478, 508 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 123, 226, 307, 632 |
| Bse118I | RCCGGY | 1 cut(s) | 647 |
| Bse1I | ACTGG | 1 cut(s) | 431 |
| Bse8I | GATNNNNATC | 1 cut(s) | 215 |
| BseDI | CCNNGG | 5 cut(s) | 33, 246, 318, 378, 583 |
| BseGI | GGATG | 1 cut(s) | 643 |
| BseJI | GATNNNNATC | 1 cut(s) | 215 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 123, 226, 307, 632 |
| BseMII | CTCAG | 2 cut(s) | 453, 648 |
| BseNI | ACTGG | 1 cut(s) | 431 |
| BseRI | GAGGAG | 1 cut(s) | 310 |
| BseXI | GCAGC | 4 cut(s) | 111, 235, 355, 520 |
| BseYI | CCCAGC | 3 cut(s) | 22, 279, 611 |
| Bsh1236I | CGCG | 1 cut(s) | 248 |
| BshFI | GGCC | 3 cut(s) | 32, 68, 377 |
| BsiHKAI | GWGCWC | 1 cut(s) | 655 |
| BsiHKCI | CYCGRG | 1 cut(s) | 543 |
| BsiSI | CCGG | 3 cut(s) | 378, 467, 648 |
| BslFI | GGGAC | 2 cut(s) | 140, 242 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 123, 226, 307, 632 |
| BsmAI | GTCTC | 1 cut(s) | 517 |
| BsmFI | GGGAC | 2 cut(s) | 140, 242 |
| BsnI | GGCC | 3 cut(s) | 32, 68, 377 |
| BsoBI | CYCGRG | 1 cut(s) | 543 |
| Bsp1286I | GDGCHC | 1 cut(s) | 655 |
| Bsp143I | GATC | 6 cut(s) | 7, 184, 210, 216, 587, 592 |
| Bsp19I | CCATGG | 1 cut(s) | 583 |
| BspANI | GGCC | 3 cut(s) | 32, 68, 377 |
| BspCNI | CTCAG | 2 cut(s) | 452, 649 |
| BspFNI | CGCG | 1 cut(s) | 248 |
| BspLI | GGNNCC | 1 cut(s) | 299 |
| BspMAI | CTGCAG | 1 cut(s) | 225 |
| BspPI | GGATC | 3 cut(s) | 192, 211, 595 |
| BsrBI | CCGCTC | 1 cut(s) | 438 |
| BsrFI | RCCGGY | 1 cut(s) | 647 |
| BsrI | ACTGG | 1 cut(s) | 431 |
| BssAI | RCCGGY | 1 cut(s) | 647 |
| BssECI | CCNNGG | 5 cut(s) | 33, 246, 318, 378, 583 |
| BssMI | GATC | 6 cut(s) | 7, 184, 210, 216, 587, 592 |
| BssNI | GRCGYC | 1 cut(s) | 566 |
| BssSI | CACGAG | 1 cut(s) | 516 |
| BssT1I | CCWWGG | 2 cut(s) | 33, 583 |
| Bst2BI | CACGAG | 1 cut(s) | 516 |
| Bst4CI | ACNGT | 2 cut(s) | 146, 559 |
| BstACI | GRCGYC | 1 cut(s) | 566 |
| BstC8I | GCNNGC | 6 cut(s) | 45, 97, 104, 192, 391, 461 |
| BstDEI | CTNAG | 2 cut(s) | 439, 657 |
| BstDSI | CCRYGG | 3 cut(s) | 246, 318, 583 |
| BstEII | GGTNACC | 1 cut(s) | 310 |
| BstF5I | GGATG | 1 cut(s) | 643 |
| BstFNI | CGCG | 1 cut(s) | 248 |
| BstKTI | GATC | 6 cut(s) | 10, 187, 213, 219, 590, 595 |
| BstMAI | GTCTC | 1 cut(s) | 517 |
| BstMBI | GATC | 6 cut(s) | 7, 184, 210, 216, 587, 592 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 92, 187, 254, 323, 374 |
| BstPI | GGTNACC | 1 cut(s) | 310 |
| BstSCI | CCNGG | 1 cut(s) | 377 |
| BstSFI | CTRYAG | 1 cut(s) | 221 |
| BstUI | CGCG | 1 cut(s) | 248 |
| BstV1I | GCAGC | 4 cut(s) | 111, 235, 355, 520 |
| BstX2I | RGATCY | 2 cut(s) | 216, 587 |
| BstYI | RGATCY | 2 cut(s) | 216, 587 |
| BsuRI | GGCC | 3 cut(s) | 32, 68, 377 |
| BtgI | CCRYGG | 3 cut(s) | 246, 318, 583 |
| BtsCI | GGATG | 1 cut(s) | 643 |
| Cac8I | GCNNGC | 6 cut(s) | 45, 97, 104, 192, 391, 461 |
| Cfr10I | RCCGGY | 1 cut(s) | 647 |
| Cfr42I | CCGCGG | 1 cut(s) | 249 |
| CseI | GACGC | 2 cut(s) | 452, 574 |
| Csp6I | GTAC | 1 cut(s) | 346 |
| CviAII | CATG | 2 cut(s) | 169, 584 |
| CviQI | GTAC | 1 cut(s) | 346 |
| DdeI | CTNAG | 2 cut(s) | 439, 657 |
| DpnI | GATC | 6 cut(s) | 9, 186, 212, 218, 589, 594 |
| DpnII | GATC | 6 cut(s) | 7, 184, 210, 216, 587, 592 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 431 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 431 |
| EaeI | YGGCCR | 1 cut(s) | 66 |
| EciI | GGCGGA | 2 cut(s) | 62, 356 |
| Eco130I | CCWWGG | 2 cut(s) | 33, 583 |
| Eco57I | CTGAAG | 1 cut(s) | 425 |
| Eco88I | CYCGRG | 1 cut(s) | 543 |
| Eco91I | GGTNACC | 1 cut(s) | 310 |
| EcoO65I | GGTNACC | 1 cut(s) | 310 |
| EcoT14I | CCWWGG | 2 cut(s) | 33, 583 |
| ErhI | CCWWGG | 2 cut(s) | 33, 583 |
| FaeI | CATG | 2 cut(s) | 172, 587 |
| FaiI | YATR | 3 cut(s) | 170, 540, 585 |
| FaqI | GGGAC | 2 cut(s) | 140, 242 |
| FatI | CATG | 2 cut(s) | 168, 583 |
| FauI | CCCGC | 4 cut(s) | 104, 174, 219, 241 |
| FbaI | TGATCA | 1 cut(s) | 592 |
| Fnu4HI | GCNGC | 6 cut(s) | 87, 100, 195, 224, 369, 534 |
| FokI | GGATG | 1 cut(s) | 650 |
| Fsp4HI | GCNGC | 6 cut(s) | 87, 100, 195, 224, 369, 534 |
| FspBI | CTAG | 2 cut(s) | 158, 395 |
| GluI | GCNGC | 6 cut(s) | 87, 100, 195, 224, 369, 534 |
| GsaI | CCCAGC | 3 cut(s) | 26, 283, 615 |
| HaeIII | GGCC | 3 cut(s) | 32, 68, 377 |
| HapII | CCGG | 3 cut(s) | 378, 467, 648 |
| HgaI | GACGC | 2 cut(s) | 452, 574 |
| Hin1I | GRCGYC | 1 cut(s) | 566 |
| Hin1II | CATG | 2 cut(s) | 172, 587 |
| HinfI | GANTC | 2 cut(s) | 230, 487 |
| HpaII | CCGG | 3 cut(s) | 378, 467, 648 |
| HphI | GGTGA | 2 cut(s) | 281, 304 |
| Hpy188I | TCNGA | 3 cut(s) | 405, 592, 597 |
| Hpy188III | TCNNGA | 5 cut(s) | 13, 205, 214, 331, 656 |
| HpyAV | CCTTC | 4 cut(s) | 193, 367, 406, 410 |
| HpyCH4III | ACNGT | 2 cut(s) | 146, 559 |
| HpyCH4IV | ACGT | 1 cut(s) | 642 |
| HpyCH4V | TGCA | 3 cut(s) | 55, 122, 223 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 92, 187, 254, 323, 374 |
| HpyF3I | CTNAG | 2 cut(s) | 439, 657 |
| HpySE526I | ACGT | 1 cut(s) | 642 |
| Hsp92I | GRCGYC | 1 cut(s) | 566 |
| Hsp92II | CATG | 2 cut(s) | 172, 587 |
| Ksp22I | TGATCA | 1 cut(s) | 592 |
| KspI | CCGCGG | 1 cut(s) | 249 |
| Kzo9I | GATC | 6 cut(s) | 7, 184, 210, 216, 587, 592 |
| LmnI | GCTCC | 2 cut(s) | 297, 658 |
| Lsp1109I | GCAGC | 4 cut(s) | 111, 235, 355, 520 |
| LweI | GCATC | 1 cut(s) | 82 |
| MaeI | CTAG | 2 cut(s) | 158, 395 |
| MaeII | ACGT | 1 cut(s) | 642 |
| MaeIII | GTNAC | 1 cut(s) | 310 |
| MalI | GATC | 6 cut(s) | 9, 186, 212, 218, 589, 594 |
| MbiI | CCGCTC | 1 cut(s) | 438 |
| MboI | GATC | 6 cut(s) | 7, 184, 210, 216, 587, 592 |
| MboII | GAAGA | 1 cut(s) | 220 |
| MflI | RGATCY | 2 cut(s) | 216, 587 |
| MhlI | GDGCHC | 1 cut(s) | 655 |
| MlsI | TGGCCA | 1 cut(s) | 68 |
| MluCI | AATT | 1 cut(s) | 503 |
| MluNI | TGGCCA | 1 cut(s) | 68 |
| MlyI | GAGTC | 2 cut(s) | 224, 481 |
| MmeI | TCCRAC | 1 cut(s) | 243 |
| Mox20I | TGGCCA | 1 cut(s) | 68 |
| MscI | TGGCCA | 1 cut(s) | 68 |
| MseI | TTAA | 2 cut(s) | 240, 527 |
| MslI | CAYNNNNRTG | 1 cut(s) | 317 |
| Msp20I | TGGCCA | 1 cut(s) | 68 |
| MspA1I | CMGCKG | 6 cut(s) | 61, 190, 226, 248, 283, 484 |
| MspI | CCGG | 3 cut(s) | 378, 467, 648 |
| MspR9I | CCNGG | 1 cut(s) | 379 |
| MvnI | CGCG | 1 cut(s) | 248 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 92, 187, 254, 323, 374 |
| NciI | CCSGG | 1 cut(s) | 379 |
| NcoI | CCATGG | 1 cut(s) | 583 |
| NdeII | GATC | 6 cut(s) | 7, 184, 210, 216, 587, 592 |
| NlaIII | CATG | 2 cut(s) | 172, 587 |
| NlaIV | GGNNCC | 1 cut(s) | 299 |
| NmuCI | GTSAC | 1 cut(s) | 310 |
| OliI | CACNNNNGTG | 1 cut(s) | 317 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 632 |
| PkrI | GCNGC | 6 cut(s) | 88, 101, 196, 225, 370, 535 |
| PleI | GAGTC | 2 cut(s) | 224, 481 |
| PpsI | GAGTC | 2 cut(s) | 224, 481 |
| PspEI | GGTNACC | 1 cut(s) | 310 |
| PspFI | CCCAGC | 3 cut(s) | 22, 279, 611 |
| PspN4I | GGNNCC | 1 cut(s) | 299 |
| PstI | CTGCAG | 1 cut(s) | 225 |
| PsuI | RGATCY | 2 cut(s) | 216, 587 |
| PvuII | CAGCTG | 3 cut(s) | 190, 283, 484 |
| RsaI | GTAC | 1 cut(s) | 347 |
| RsaNI | GTAC | 1 cut(s) | 346 |
| RseI | CAYNNNNRTG | 1 cut(s) | 317 |
| SacII | CCGCGG | 1 cut(s) | 249 |
| SaqAI | TTAA | 2 cut(s) | 240, 527 |
| SatI | GCNGC | 6 cut(s) | 87, 100, 195, 224, 369, 534 |
| Sau3AI | GATC | 6 cut(s) | 7, 184, 210, 216, 587, 592 |
| SchI | GAGTC | 2 cut(s) | 224, 481 |
| ScrFI | CCNGG | 1 cut(s) | 379 |
| SduI | GDGCHC | 1 cut(s) | 655 |
| SfaNI | GCATC | 1 cut(s) | 82 |
| SfcI | CTRYAG | 1 cut(s) | 221 |
| Sfr303I | CCGCGG | 1 cut(s) | 249 |
| SgrBI | CCGCGG | 1 cut(s) | 249 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 317 |
| Sse9I | AATT | 1 cut(s) | 503 |
| SspMI | CTAG | 2 cut(s) | 158, 395 |
| StyD4I | CCNGG | 1 cut(s) | 377 |
| StyI | CCWWGG | 2 cut(s) | 33, 583 |
| TaaI | ACNGT | 2 cut(s) | 146, 559 |
| TaiI | ACGT | 1 cut(s) | 645 |
| TaqI | TCGA | 1 cut(s) | 213 |
| TaqII | GACCGA | 1 cut(s) | 89 |
| TasI | AATT | 1 cut(s) | 503 |
| TatI | WGTACW | 1 cut(s) | 345 |
| TauI | GCSGC | 2 cut(s) | 89, 197 |
| Tru1I | TTAA | 2 cut(s) | 240, 527 |
| Tru9I | TTAA | 2 cut(s) | 240, 527 |
| TseFI | GTSAC | 1 cut(s) | 310 |
| TseI | GCWGC | 4 cut(s) | 99, 223, 368, 533 |
| Tsp45I | GTSAC | 1 cut(s) | 310 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 632 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 40 |
| XspI | CTAG | 2 cut(s) | 158, 395 |