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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 987 |
| AccB1I | GGYRCC | 2 cut(s) | 358, 993 |
| AccBSI | CCGCTC | 4 cut(s) | 778, 916, 1057, 1069 |
| AccII | CGCG | 1 cut(s) | 1019 |
| AccIII | TCCGGA | 1 cut(s) | 745 |
| AclI | AACGTT | 1 cut(s) | 23 |
| AclWI | GGATC | 1 cut(s) | 737 |
| AcsI | RAATTY | 1 cut(s) | 35 |
| AcyI | GRCGYC | 2 cut(s) | 181, 984 |
| AfaI | GTAC | 3 cut(s) | 305, 440, 485 |
| AflIII | ACRYGT | 1 cut(s) | 856 |
| AgsI | TTSAA | 1 cut(s) | 626 |
| AjnI | CCWGG | 5 cut(s) | 66, 351, 398, 570, 885 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 746, 778 |
| AluBI | AGCT | 5 cut(s) | 559, 843, 871, 955, 1039 |
| AluI | AGCT | 5 cut(s) | 559, 843, 871, 955, 1039 |
| AlwI | GGATC | 1 cut(s) | 737 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 577 |
| Ama87I | CYCGRG | 1 cut(s) | 1064 |
| Aor13HI | TCCGGA | 1 cut(s) | 745 |
| AoxI | GGCC | 3 cut(s) | 703, 940, 963 |
| ApeKI | GCWGC | 4 cut(s) | 165, 507, 602, 871 |
| ApoI | RAATTY | 1 cut(s) | 35 |
| AspLEI | GCGC | 4 cut(s) | 315, 459, 540, 577 |
| AspS9I | GGNCC | 3 cut(s) | 408, 940, 1060 |
| AsuC2I | CCSGG | 2 cut(s) | 907, 1088 |
| AsuNHI | GCTAGC | 1 cut(s) | 976 |
| AvaI | CYCGRG | 1 cut(s) | 1064 |
| AvaII | GGWCC | 2 cut(s) | 408, 1060 |
| BaeGI | GKGCMC | 1 cut(s) | 361 |
| BanI | GGYRCC | 2 cut(s) | 358, 993 |
| BbsI | GAAGAC | 1 cut(s) | 650 |
| BbvI | GCAGC | 4 cut(s) | 177, 494, 589, 858 |
| BccI | CCATC | 6 cut(s) | 123, 147, 151, 426, 774, 794 |
| BceAI | ACGGC | 3 cut(s) | 441, 590, 1034 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 436, 470 |
| BciT130I | CCWGG | 5 cut(s) | 68, 353, 400, 572, 887 |
| BclI | TGATCA | 1 cut(s) | 1075 |
| BcnI | CCSGG | 2 cut(s) | 907, 1088 |
| BfaI | CTAG | 2 cut(s) | 782, 977 |
| BfmI | CTRYAG | 1 cut(s) | 872 |
| BfoI | RGCGCY | 2 cut(s) | 316, 578 |
| BisI | GCNGC | 9 cut(s) | 166, 508, 603, 657, 695, 703, 779, 872, 917 |
| BlpI | GCTNAGC | 1 cut(s) | 844 |
| BlsI | GCNGC | 9 cut(s) | 167, 509, 604, 658, 696, 704, 780, 873, 918 |
| Bme1390I | CCNGG | 7 cut(s) | 68, 353, 400, 572, 887, 907, 1088 |
| Bme18I | GGWCC | 2 cut(s) | 408, 1060 |
| BmeT110I | CYCGRG | 1 cut(s) | 1064 |
| BmgT120I | GGNCC | 3 cut(s) | 408, 940, 1060 |
| BmiI | GGNNCC | 5 cut(s) | 264, 360, 409, 995, 1061 |
| BmrFI | CCNGG | 7 cut(s) | 68, 353, 400, 572, 887, 907, 1088 |
| BmsI | GCATC | 5 cut(s) | 177, 214, 459, 902, 1015 |
| BmtI | GCTAGC | 1 cut(s) | 980 |
| BpiI | GAAGAC | 1 cut(s) | 650 |
| BpmI | CTGGAG | 1 cut(s) | 1113 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 844 |
| BpuEI | CTTGAG | 3 cut(s) | 361, 400, 965 |
| BpuMI | CCSGG | 2 cut(s) | 907, 1088 |
| BsaAI | YACGTR | 2 cut(s) | 307, 859 |
| BsaHI | GRCGYC | 2 cut(s) | 181, 984 |
| BsaJI | CCNNGG | 8 cut(s) | 67, 316, 352, 606, 678, 905, 1002, 1086 |
| BsaWI | WCCGGW | 1 cut(s) | 745 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 740, 746, 770, 776 |
| Bse1I | ACTGG | 1 cut(s) | 553 |
| BseAI | TCCGGA | 1 cut(s) | 745 |
| BseBI | CCWGG | 5 cut(s) | 68, 353, 400, 572, 887 |
| BseDI | CCNNGG | 8 cut(s) | 67, 316, 352, 606, 678, 905, 1002, 1086 |
| BseGI | GGATG | 4 cut(s) | 139, 805, 822, 1030 |
| BseMII | CTCAG | 2 cut(s) | 858, 999 |
| BseNI | ACTGG | 1 cut(s) | 553 |
| BseRI | GAGGAG | 1 cut(s) | 94 |
| BseSI | GKGCMC | 1 cut(s) | 361 |
| BseXI | GCAGC | 4 cut(s) | 177, 494, 589, 858 |
| BseYI | CCCAGC | 2 cut(s) | 50, 900 |
| Bsh1236I | CGCG | 1 cut(s) | 1019 |
| BshFI | GGCC | 3 cut(s) | 705, 942, 965 |
| BshNI | GGYRCC | 2 cut(s) | 358, 993 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1064 |
| BsiSI | CCGG | 3 cut(s) | 746, 907, 1088 |
| BslFI | GGGAC | 3 cut(s) | 421, 1069, 1073 |
| BsmFI | GGGAC | 3 cut(s) | 421, 1069, 1073 |
| BsnI | GGCC | 3 cut(s) | 705, 942, 965 |
| BsoBI | CYCGRG | 1 cut(s) | 1064 |
| Bsp1286I | GDGCHC | 1 cut(s) | 361 |
| Bsp13I | TCCGGA | 1 cut(s) | 745 |
| Bsp143I | GATC | 4 cut(s) | 58, 532, 742, 1075 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 844 |
| Bsp19I | CCATGG | 1 cut(s) | 678 |
| BspANI | GGCC | 3 cut(s) | 705, 942, 965 |
| BspCNI | CTCAG | 2 cut(s) | 857, 1000 |
| BspEI | TCCGGA | 1 cut(s) | 745 |
| BspFNI | CGCG | 1 cut(s) | 1019 |
| BspLI | GGNNCC | 5 cut(s) | 264, 360, 409, 995, 1061 |
| BspMAI | CTGCAG | 1 cut(s) | 876 |
| BspOI | GCTAGC | 1 cut(s) | 980 |
| BspPI | GGATC | 1 cut(s) | 737 |
| BspT107I | GGYRCC | 2 cut(s) | 358, 993 |
| BsrBI | CCGCTC | 4 cut(s) | 778, 916, 1057, 1069 |
| BsrI | ACTGG | 1 cut(s) | 553 |
| BssECI | CCNNGG | 8 cut(s) | 67, 316, 352, 606, 678, 905, 1002, 1086 |
| BssMI | GATC | 4 cut(s) | 58, 532, 742, 1075 |
| BssNI | GRCGYC | 2 cut(s) | 181, 984 |
| BssT1I | CCWWGG | 3 cut(s) | 316, 678, 1002 |
| Bst2UI | CCWGG | 5 cut(s) | 68, 353, 400, 572, 887 |
| Bst4CI | ACNGT | 5 cut(s) | 131, 271, 622, 663, 820 |
| Bst6I | CTCTTC | 2 cut(s) | 474, 924 |
| BstACI | GRCGYC | 2 cut(s) | 181, 984 |
| BstBAI | YACGTR | 2 cut(s) | 307, 859 |
| BstC8I | GCNNGC | 7 cut(s) | 329, 455, 512, 631, 794, 978, 1030 |
| BstDEI | CTNAG | 3 cut(s) | 161, 844, 1008 |
| BstDSI | CCRYGG | 2 cut(s) | 606, 678 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 593, 1001 |
| BstF5I | GGATG | 4 cut(s) | 139, 805, 822, 1030 |
| BstFNI | CGCG | 1 cut(s) | 1019 |
| BstH2I | RGCGCY | 2 cut(s) | 316, 578 |
| BstHHI | GCGC | 4 cut(s) | 315, 459, 540, 577 |
| BstKTI | GATC | 4 cut(s) | 61, 535, 745, 1078 |
| BstMBI | GATC | 4 cut(s) | 58, 532, 742, 1075 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 535, 1025 |
| BstNI | CCWGG | 5 cut(s) | 68, 353, 400, 572, 887 |
| BstSCI | CCNGG | 7 cut(s) | 66, 351, 398, 570, 885, 905, 1086 |
| BstSFI | CTRYAG | 1 cut(s) | 872 |
| BstSLI | GKGCMC | 1 cut(s) | 361 |
| BstUI | CGCG | 1 cut(s) | 1019 |
| BstV1I | GCAGC | 4 cut(s) | 177, 494, 589, 858 |
| BstV2I | GAAGAC | 1 cut(s) | 650 |
| BsuRI | GGCC | 3 cut(s) | 705, 942, 965 |
| BtgI | CCRYGG | 2 cut(s) | 606, 678 |
| BtsCI | GGATG | 4 cut(s) | 139, 805, 822, 1030 |
| BtsIMutI | CAGTG | 1 cut(s) | 546 |
| Cac8I | GCNNGC | 7 cut(s) | 329, 455, 512, 631, 794, 978, 1030 |
| CaiI | CAGNNNCTG | 1 cut(s) | 577 |
| CfoI | GCGC | 4 cut(s) | 315, 459, 540, 577 |
| Cfr13I | GGNCC | 3 cut(s) | 408, 940, 1060 |
| CseI | GACGC | 3 cut(s) | 170, 608, 1025 |
| Csp6I | GTAC | 3 cut(s) | 304, 439, 484 |
| CviAII | CATG | 4 cut(s) | 209, 391, 679, 1079 |
| CviQI | GTAC | 3 cut(s) | 304, 439, 484 |
| DdeI | CTNAG | 3 cut(s) | 161, 844, 1008 |
| DpnI | GATC | 4 cut(s) | 60, 534, 744, 1077 |
| DpnII | GATC | 4 cut(s) | 58, 532, 742, 1075 |
| Eam1104I | CTCTTC | 2 cut(s) | 474, 924 |
| EarI | CTCTTC | 2 cut(s) | 474, 924 |
| Eco130I | CCWWGG | 3 cut(s) | 316, 678, 1002 |
| Eco47I | GGWCC | 2 cut(s) | 408, 1060 |
| Eco88I | CYCGRG | 1 cut(s) | 1064 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 593, 1001 |
| EcoO109I | RGGNCCY | 3 cut(s) | 408, 940, 1060 |
| EcoRII | CCWGG | 5 cut(s) | 66, 351, 398, 570, 885 |
| EcoT14I | CCWWGG | 3 cut(s) | 316, 678, 1002 |
| ErhI | CCWWGG | 3 cut(s) | 316, 678, 1002 |
| FaeI | CATG | 4 cut(s) | 212, 394, 682, 1082 |
| FaqI | GGGAC | 3 cut(s) | 421, 1069, 1073 |
| FatI | CATG | 4 cut(s) | 208, 390, 678, 1078 |
| FauI | CCCGC | 3 cut(s) | 320, 638, 1050 |
| FbaI | TGATCA | 1 cut(s) | 1075 |
| Fnu4HI | GCNGC | 9 cut(s) | 166, 508, 603, 657, 695, 703, 779, 872, 917 |
| FokI | GGATG | 4 cut(s) | 126, 809, 812, 1037 |
| Fsp4HI | GCNGC | 9 cut(s) | 166, 508, 603, 657, 695, 703, 779, 872, 917 |
| FspBI | CTAG | 2 cut(s) | 782, 977 |
| GlaI | GCGC | 4 cut(s) | 314, 458, 539, 576 |
| GluI | GCNGC | 9 cut(s) | 166, 508, 603, 657, 695, 703, 779, 872, 917 |
| GsaI | CCCAGC | 2 cut(s) | 54, 904 |
| GsuI | CTGGAG | 1 cut(s) | 1113 |
| HaeII | RGCGCY | 2 cut(s) | 316, 578 |
| HaeIII | GGCC | 3 cut(s) | 705, 942, 965 |
| HapII | CCGG | 3 cut(s) | 746, 907, 1088 |
| HgaI | GACGC | 3 cut(s) | 170, 608, 1025 |
| HhaI | GCGC | 4 cut(s) | 315, 459, 540, 577 |
| Hin1I | GRCGYC | 2 cut(s) | 181, 984 |
| Hin1II | CATG | 4 cut(s) | 212, 394, 682, 1082 |
| Hin6I | GCGC | 4 cut(s) | 313, 457, 538, 575 |
| HinP1I | GCGC | 4 cut(s) | 313, 457, 538, 575 |
| HincII | GTYRAC | 2 cut(s) | 232, 568 |
| HindII | GTYRAC | 2 cut(s) | 232, 568 |
| HinfI | GANTC | 4 cut(s) | 343, 386, 580, 710 |
| HpaI | GTTAAC | 1 cut(s) | 232 |
| HpaII | CCGG | 3 cut(s) | 746, 907, 1088 |
| Hpy166II | GTNNAC | 5 cut(s) | 232, 304, 337, 568, 610 |
| Hpy188I | TCNGA | 4 cut(s) | 29, 173, 253, 854 |
| Hpy188III | TCNNGA | 3 cut(s) | 736, 746, 814 |
| Hpy8I | GTNNAC | 5 cut(s) | 232, 304, 337, 568, 610 |
| Hpy99I | CGWCG | 4 cut(s) | 186, 820, 1024, 1055 |
| HpyAV | CCTTC | 5 cut(s) | 271, 421, 551, 859, 931 |
| HpyCH4III | ACNGT | 5 cut(s) | 131, 271, 622, 663, 820 |
| HpyCH4IV | ACGT | 4 cut(s) | 23, 306, 858, 984 |
| HpyCH4V | TGCA | 4 cut(s) | 258, 472, 874, 1032 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 535, 1025 |
| HpyF3I | CTNAG | 3 cut(s) | 161, 844, 1008 |
| HpySE526I | ACGT | 4 cut(s) | 23, 306, 858, 984 |
| Hsp92I | GRCGYC | 2 cut(s) | 181, 984 |
| Hsp92II | CATG | 4 cut(s) | 212, 394, 682, 1082 |
| HspAI | GCGC | 4 cut(s) | 313, 457, 538, 575 |
| Kpn2I | TCCGGA | 1 cut(s) | 745 |
| Ksp22I | TGATCA | 1 cut(s) | 1075 |
| KspAI | GTTAAC | 1 cut(s) | 232 |
| Kzo9I | GATC | 4 cut(s) | 58, 532, 742, 1075 |
| LmnI | GCTCC | 4 cut(s) | 9, 556, 952, 1094 |
| Lsp1109I | GCAGC | 4 cut(s) | 177, 494, 589, 858 |
| LweI | GCATC | 5 cut(s) | 177, 214, 459, 902, 1015 |
| MaeI | CTAG | 2 cut(s) | 782, 977 |
| MaeII | ACGT | 4 cut(s) | 23, 306, 858, 984 |
| MaeIII | GTNAC | 3 cut(s) | 131, 673, 1013 |
| MalI | GATC | 4 cut(s) | 60, 534, 744, 1077 |
| MbiI | CCGCTC | 4 cut(s) | 778, 916, 1057, 1069 |
| MboI | GATC | 4 cut(s) | 58, 532, 742, 1075 |
| MboII | GAAGA | 5 cut(s) | 491, 649, 652, 655, 941 |
| MhlI | GDGCHC | 1 cut(s) | 361 |
| MluCI | AATT | 2 cut(s) | 35, 96 |
| MlyI | GAGTC | 3 cut(s) | 352, 574, 704 |
| MmeI | TCCRAC | 1 cut(s) | 850 |
| MroI | TCCGGA | 1 cut(s) | 745 |
| MseI | TTAA | 3 cut(s) | 231, 591, 1114 |
| MslI | CAYNNNNRTG | 1 cut(s) | 771 |
| MspA1I | CMGCKG | 1 cut(s) | 991 |
| MspI | CCGG | 3 cut(s) | 746, 907, 1088 |
| MspR9I | CCNGG | 7 cut(s) | 68, 353, 400, 572, 887, 907, 1088 |
| MvaI | CCWGG | 5 cut(s) | 68, 353, 400, 572, 887 |
| MvnI | CGCG | 1 cut(s) | 1019 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 535, 1025 |
| NciI | CCSGG | 2 cut(s) | 907, 1088 |
| NcoI | CCATGG | 1 cut(s) | 678 |
| NdeII | GATC | 4 cut(s) | 58, 532, 742, 1075 |
| NheI | GCTAGC | 1 cut(s) | 976 |
| NlaIII | CATG | 4 cut(s) | 212, 394, 682, 1082 |
| NlaIV | GGNNCC | 5 cut(s) | 264, 360, 409, 995, 1061 |
| NmuCI | GTSAC | 3 cut(s) | 131, 673, 1013 |
| PaeR7I | CTCGAG | 1 cut(s) | 1064 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 864 |
| PfeI | GAWTC | 1 cut(s) | 386 |
| PkrI | GCNGC | 9 cut(s) | 167, 509, 604, 658, 696, 704, 780, 873, 918 |
| PleI | GAGTC | 3 cut(s) | 351, 574, 704 |
| PpsI | GAGTC | 3 cut(s) | 351, 574, 704 |
| Ppu21I | YACGTR | 2 cut(s) | 307, 859 |
| PpuMI | RGGWCCY | 2 cut(s) | 408, 1060 |
| Psp1406I | AACGTT | 1 cut(s) | 23 |
| Psp5II | RGGWCCY | 2 cut(s) | 408, 1060 |
| Psp6I | CCWGG | 5 cut(s) | 66, 351, 398, 570, 885 |
| PspFI | CCCAGC | 2 cut(s) | 50, 900 |
| PspGI | CCWGG | 5 cut(s) | 66, 351, 398, 570, 885 |
| PspN4I | GGNNCC | 5 cut(s) | 264, 360, 409, 995, 1061 |
| PspPI | GGNCC | 3 cut(s) | 408, 940, 1060 |
| PspPPI | RGGWCCY | 2 cut(s) | 408, 1060 |
| PspXI | VCTCGAGB | 1 cut(s) | 1064 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 22, 54 |
| PstI | CTGCAG | 1 cut(s) | 876 |
| PstNI | CAGNNNCTG | 1 cut(s) | 577 |
| RsaI | GTAC | 3 cut(s) | 305, 440, 485 |
| RsaNI | GTAC | 3 cut(s) | 304, 439, 484 |
| RseI | CAYNNNNRTG | 1 cut(s) | 771 |
| SaqAI | TTAA | 3 cut(s) | 231, 591, 1114 |
| SatI | GCNGC | 9 cut(s) | 166, 508, 603, 657, 695, 703, 779, 872, 917 |
| Sau3AI | GATC | 4 cut(s) | 58, 532, 742, 1075 |
| Sau96I | GGNCC | 3 cut(s) | 408, 940, 1060 |
| SchI | GAGTC | 3 cut(s) | 352, 574, 704 |
| ScrFI | CCNGG | 7 cut(s) | 68, 353, 400, 572, 887, 907, 1088 |
| SduI | GDGCHC | 1 cut(s) | 361 |
| SfaNI | GCATC | 5 cut(s) | 177, 214, 459, 902, 1015 |
| SfcI | CTRYAG | 1 cut(s) | 872 |
| Sfr274I | CTCGAG | 1 cut(s) | 1064 |
| SinI | GGWCC | 2 cut(s) | 408, 1060 |
| SlaI | CTCGAG | 1 cut(s) | 1064 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 771 |
| SmlI | CTYRAG | 4 cut(s) | 340, 379, 944, 1064 |
| SmoI | CTYRAG | 4 cut(s) | 340, 379, 944, 1064 |
| Sse9I | AATT | 2 cut(s) | 35, 96 |
| SspI | AATATT | 1 cut(s) | 1045 |
| SspMI | CTAG | 2 cut(s) | 782, 977 |
| StyD4I | CCNGG | 7 cut(s) | 66, 351, 398, 570, 885, 905, 1086 |
| StyI | CCWWGG | 3 cut(s) | 316, 678, 1002 |
| TaaI | ACNGT | 5 cut(s) | 131, 271, 622, 663, 820 |
| TaiI | ACGT | 4 cut(s) | 26, 309, 861, 987 |
| TaqI | TCGA | 4 cut(s) | 372, 867, 1053, 1065 |
| TasI | AATT | 2 cut(s) | 35, 96 |
| TauI | GCSGC | 5 cut(s) | 659, 697, 705, 781, 919 |
| TfiI | GAWTC | 1 cut(s) | 386 |
| Tru1I | TTAA | 3 cut(s) | 231, 591, 1114 |
| Tru9I | TTAA | 3 cut(s) | 231, 591, 1114 |
| TscAI | CASTG | 1 cut(s) | 553 |
| TseFI | GTSAC | 3 cut(s) | 131, 673, 1013 |
| TseI | GCWGC | 4 cut(s) | 165, 507, 602, 871 |
| Tsp45I | GTSAC | 3 cut(s) | 131, 673, 1013 |
| TspDTI | ATGAA | 1 cut(s) | 950 |
| TspGWI | ACGGA | 3 cut(s) | 629, 743, 1037 |
| TspRI | CASTG | 1 cut(s) | 553 |
| VpaK11BI | GGWCC | 2 cut(s) | 408, 1060 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 593, 1001 |
| XapI | RAATTY | 1 cut(s) | 35 |
| XhoI | CTCGAG | 1 cut(s) | 1064 |
| XspI | CTAG | 2 cut(s) | 782, 977 |
| ZraI | GACGTC | 1 cut(s) | 985 |