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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 122 |
| AccBSI | CCGCTC | 1 cut(s) | 394 |
| AciI | CCGC | 6 cut(s) | 247, 270, 394, 424, 489, 526 |
| AclI | AACGTT | 1 cut(s) | 168 |
| AcoI | YGGCCR | 2 cut(s) | 311, 331 |
| AcsI | RAATTY | 2 cut(s) | 356, 501 |
| AcyI | GRCGYC | 1 cut(s) | 119 |
| AfaI | GTAC | 1 cut(s) | 212 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 25, 113, 295, 427 |
| AflII | CTTAAG | 1 cut(s) | 521 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 288 |
| AluBI | AGCT | 5 cut(s) | 23, 372, 412, 454, 496 |
| AluI | AGCT | 5 cut(s) | 23, 372, 412, 454, 496 |
| Alw21I | GWGCWC | 2 cut(s) | 374, 414 |
| AoxI | GGCC | 8 cut(s) | 4, 27, 33, 222, 240, 311, 324, 331 |
| ApeKI | GCWGC | 2 cut(s) | 304, 379 |
| ApoI | RAATTY | 2 cut(s) | 356, 501 |
| AspA2I | CCTAGG | 1 cut(s) | 364 |
| AspLEI | GCGC | 2 cut(s) | 100, 181 |
| AspS9I | GGNCC | 4 cut(s) | 4, 27, 222, 282 |
| AvaII | GGWCC | 1 cut(s) | 282 |
| AvrII | CCTAGG | 1 cut(s) | 364 |
| BalI | TGGCCA | 1 cut(s) | 333 |
| BanII | GRGCYC | 2 cut(s) | 374, 414 |
| Bbv12I | GWGCWC | 2 cut(s) | 374, 414 |
| BbvI | GCAGC | 2 cut(s) | 291, 391 |
| BccI | CCATC | 2 cut(s) | 272, 515 |
| BceAI | ACGGC | 1 cut(s) | 298 |
| BclI | TGATCA | 1 cut(s) | 532 |
| BfaI | CTAG | 2 cut(s) | 20, 365 |
| BfmI | CTRYAG | 1 cut(s) | 305 |
| BfoI | RGCGCY | 1 cut(s) | 101 |
| BfrI | CTTAAG | 1 cut(s) | 521 |
| BisI | GCNGC | 5 cut(s) | 247, 305, 380, 395, 490 |
| BlnI | CCTAGG | 1 cut(s) | 364 |
| BlsI | GCNGC | 5 cut(s) | 248, 306, 381, 396, 491 |
| Bme18I | GGWCC | 1 cut(s) | 282 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 288 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 27, 222, 282 |
| BmiI | GGNNCC | 3 cut(s) | 28, 223, 283 |
| BmsI | GCATC | 3 cut(s) | 258, 463, 472 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 39, 71 |
| BpmI | CTGGAG | 1 cut(s) | 274 |
| BsaHI | GRCGYC | 1 cut(s) | 119 |
| BsaJI | CCNNGG | 4 cut(s) | 30, 364, 384, 459 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 25, 113, 295, 427 |
| Bse1I | ACTGG | 2 cut(s) | 438, 548 |
| BseDI | CCNNGG | 4 cut(s) | 30, 364, 384, 459 |
| BseGI | GGATG | 2 cut(s) | 15, 283 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 25, 113, 295, 427 |
| BseMII | CTCAG | 1 cut(s) | 492 |
| BseNI | ACTGG | 2 cut(s) | 438, 548 |
| BseRI | GAGGAG | 1 cut(s) | 422 |
| BseXI | GCAGC | 2 cut(s) | 291, 391 |
| BseYI | CCCAGC | 2 cut(s) | 23, 259 |
| BshFI | GGCC | 8 cut(s) | 6, 29, 35, 224, 242, 313, 326, 333 |
| BsiHKAI | GWGCWC | 2 cut(s) | 374, 414 |
| BslFI | GGGAC | 2 cut(s) | 130, 295 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 25, 113, 295, 427 |
| BsmFI | GGGAC | 2 cut(s) | 130, 295 |
| BsmI | GAATGC | 1 cut(s) | 473 |
| BsnI | GGCC | 8 cut(s) | 6, 29, 35, 224, 242, 313, 326, 333 |
| Bsp1286I | GDGCHC | 2 cut(s) | 374, 414 |
| Bsp143I | GATC | 2 cut(s) | 151, 532 |
| Bsp19I | CCATGG | 1 cut(s) | 30 |
| BspACI | CCGC | 6 cut(s) | 247, 270, 394, 424, 489, 526 |
| BspANI | GGCC | 8 cut(s) | 6, 29, 35, 224, 242, 313, 326, 333 |
| BspCNI | CTCAG | 1 cut(s) | 491 |
| BspLI | GGNNCC | 3 cut(s) | 28, 223, 283 |
| BspMAI | CTGCAG | 1 cut(s) | 309 |
| BspTI | CTTAAG | 1 cut(s) | 521 |
| BsrBI | CCGCTC | 1 cut(s) | 394 |
| BsrI | ACTGG | 2 cut(s) | 438, 548 |
| BssECI | CCNNGG | 4 cut(s) | 30, 364, 384, 459 |
| BssMI | GATC | 2 cut(s) | 151, 532 |
| BssNI | GRCGYC | 1 cut(s) | 119 |
| BssT1I | CCWWGG | 4 cut(s) | 30, 364, 384, 459 |
| Bst4CI | ACNGT | 2 cut(s) | 286, 298 |
| Bst6I | CTCTTC | 1 cut(s) | 225 |
| BstACI | GRCGYC | 1 cut(s) | 119 |
| BstAFI | CTTAAG | 1 cut(s) | 521 |
| BstC8I | GCNNGC | 4 cut(s) | 133, 244, 487, 494 |
| BstDEI | CTNAG | 1 cut(s) | 478 |
| BstDSI | CCRYGG | 1 cut(s) | 30 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 111 |
| BstF5I | GGATG | 2 cut(s) | 15, 283 |
| BstH2I | RGCGCY | 1 cut(s) | 101 |
| BstHHI | GCGC | 2 cut(s) | 100, 181 |
| BstKTI | GATC | 2 cut(s) | 154, 535 |
| BstMBI | GATC | 2 cut(s) | 151, 532 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 41, 185, 310, 482 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstSFI | CTRYAG | 1 cut(s) | 305 |
| BstV1I | GCAGC | 2 cut(s) | 291, 391 |
| BsuRI | GGCC | 8 cut(s) | 6, 29, 35, 224, 242, 313, 326, 333 |
| BtgI | CCRYGG | 1 cut(s) | 30 |
| BtgZI | GCGATG | 1 cut(s) | 486 |
| BtsCI | GGATG | 2 cut(s) | 15, 283 |
| BtsI | GCAGTG | 1 cut(s) | 314 |
| BtsIMutI | CAGTG | 1 cut(s) | 314 |
| Cac8I | GCNNGC | 4 cut(s) | 133, 244, 487, 494 |
| CfoI | GCGC | 2 cut(s) | 100, 181 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 27, 222, 282 |
| Csp6I | GTAC | 1 cut(s) | 211 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 42, 77 |
| CviAII | CATG | 6 cut(s) | 31, 75, 136, 191, 301, 449 |
| CviQI | GTAC | 1 cut(s) | 211 |
| DdeI | CTNAG | 1 cut(s) | 478 |
| DpnI | GATC | 2 cut(s) | 153, 534 |
| DpnII | GATC | 2 cut(s) | 151, 532 |
| DraI | TTTAAA | 1 cut(s) | 165 |
| DriI | GACNNNNNGTC | 1 cut(s) | 288 |
| EaeI | YGGCCR | 2 cut(s) | 311, 331 |
| Eam1104I | CTCTTC | 1 cut(s) | 225 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 288 |
| EarI | CTCTTC | 1 cut(s) | 225 |
| Ecl136II | GAGCTC | 2 cut(s) | 372, 412 |
| Eco130I | CCWWGG | 4 cut(s) | 30, 364, 384, 459 |
| Eco147I | AGGCCT | 1 cut(s) | 242 |
| Eco24I | GRGCYC | 2 cut(s) | 374, 414 |
| Eco47I | GGWCC | 1 cut(s) | 282 |
| Eco53kI | GAGCTC | 2 cut(s) | 372, 412 |
| EcoICRI | GAGCTC | 2 cut(s) | 372, 412 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 111 |
| EcoRI | GAATTC | 1 cut(s) | 356 |
| EcoT14I | CCWWGG | 4 cut(s) | 30, 364, 384, 459 |
| EcoT38I | GRGCYC | 2 cut(s) | 374, 414 |
| ErhI | CCWWGG | 4 cut(s) | 30, 364, 384, 459 |
| FaeI | CATG | 6 cut(s) | 34, 78, 139, 194, 304, 452 |
| FaiI | YATR | 6 cut(s) | 32, 76, 137, 192, 302, 450 |
| FaqI | GGGAC | 2 cut(s) | 130, 295 |
| FatI | CATG | 6 cut(s) | 30, 74, 135, 190, 300, 448 |
| FauI | CCCGC | 1 cut(s) | 417 |
| FbaI | TGATCA | 1 cut(s) | 532 |
| Fnu4HI | GCNGC | 5 cut(s) | 247, 305, 380, 395, 490 |
| FokI | GGATG | 2 cut(s) | 2, 290 |
| FriOI | GRGCYC | 2 cut(s) | 374, 414 |
| Fsp4HI | GCNGC | 5 cut(s) | 247, 305, 380, 395, 490 |
| FspBI | CTAG | 2 cut(s) | 20, 365 |
| GlaI | GCGC | 2 cut(s) | 99, 180 |
| GluI | GCNGC | 5 cut(s) | 247, 305, 380, 395, 490 |
| GsaI | CCCAGC | 2 cut(s) | 27, 263 |
| GsuI | CTGGAG | 1 cut(s) | 274 |
| HaeII | RGCGCY | 1 cut(s) | 101 |
| HaeIII | GGCC | 8 cut(s) | 6, 29, 35, 224, 242, 313, 326, 333 |
| HhaI | GCGC | 2 cut(s) | 100, 181 |
| Hin1I | GRCGYC | 1 cut(s) | 119 |
| Hin1II | CATG | 6 cut(s) | 34, 78, 139, 194, 304, 452 |
| Hin6I | GCGC | 2 cut(s) | 98, 179 |
| HinP1I | GCGC | 2 cut(s) | 98, 179 |
| HinfI | GANTC | 1 cut(s) | 264 |
| Hpy188I | TCNGA | 1 cut(s) | 481 |
| Hpy188III | TCNNGA | 1 cut(s) | 253 |
| HpyAV | CCTTC | 1 cut(s) | 133 |
| HpyCH4III | ACNGT | 2 cut(s) | 286, 298 |
| HpyCH4IV | ACGT | 3 cut(s) | 103, 119, 168 |
| HpyCH4V | TGCA | 3 cut(s) | 131, 307, 352 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 41, 185, 310, 482 |
| HpyF3I | CTNAG | 1 cut(s) | 478 |
| HpySE526I | ACGT | 3 cut(s) | 103, 119, 168 |
| Hsp92I | GRCGYC | 1 cut(s) | 119 |
| Hsp92II | CATG | 6 cut(s) | 34, 78, 139, 194, 304, 452 |
| HspAI | GCGC | 2 cut(s) | 98, 179 |
| Ksp22I | TGATCA | 1 cut(s) | 532 |
| Kzo9I | GATC | 2 cut(s) | 151, 532 |
| LmnI | GCTCC | 2 cut(s) | 369, 409 |
| LpnPI | CCDG | 9 cut(s) | 9, 58, 117, 238, 245, 256, 419, 434, 529 |
| Lsp1109I | GCAGC | 2 cut(s) | 291, 391 |
| LweI | GCATC | 3 cut(s) | 258, 463, 472 |
| MaeI | CTAG | 2 cut(s) | 20, 365 |
| MaeII | ACGT | 3 cut(s) | 103, 119, 168 |
| MaeIII | GTNAC | 1 cut(s) | 157 |
| MalI | GATC | 2 cut(s) | 153, 534 |
| MbiI | CCGCTC | 1 cut(s) | 394 |
| MboI | GATC | 2 cut(s) | 151, 532 |
| MboII | GAAGA | 2 cut(s) | 242, 352 |
| MfeI | CAATTG | 1 cut(s) | 182 |
| MhlI | GDGCHC | 2 cut(s) | 374, 414 |
| MlsI | TGGCCA | 1 cut(s) | 333 |
| MluCI | AATT | 3 cut(s) | 182, 356, 501 |
| MluNI | TGGCCA | 1 cut(s) | 333 |
| MmeI | TCCRAC | 1 cut(s) | 317 |
| Mox20I | TGGCCA | 1 cut(s) | 333 |
| MscI | TGGCCA | 1 cut(s) | 333 |
| MseI | TTAA | 2 cut(s) | 164, 522 |
| MslI | CAYNNNNRTG | 1 cut(s) | 206 |
| Msp20I | TGGCCA | 1 cut(s) | 333 |
| MspCI | CTTAAG | 1 cut(s) | 521 |
| MunI | CAATTG | 1 cut(s) | 182 |
| Mva1269I | GAATGC | 1 cut(s) | 473 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 41, 185, 310, 482 |
| NcoI | CCATGG | 1 cut(s) | 30 |
| NdeII | GATC | 2 cut(s) | 151, 532 |
| NlaIII | CATG | 6 cut(s) | 34, 78, 139, 194, 304, 452 |
| NlaIV | GGNNCC | 3 cut(s) | 28, 223, 283 |
| NmeAIII | GCCGAG | 1 cut(s) | 302 |
| NmuCI | GTSAC | 1 cut(s) | 157 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PceI | AGGCCT | 1 cut(s) | 242 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 351 |
| PctI | GAATGC | 1 cut(s) | 473 |
| PfeI | GAWTC | 1 cut(s) | 264 |
| PkrI | GCNGC | 5 cut(s) | 248, 306, 381, 396, 491 |
| Psp124BI | GAGCTC | 2 cut(s) | 374, 414 |
| Psp1406I | AACGTT | 1 cut(s) | 168 |
| PspFI | CCCAGC | 2 cut(s) | 23, 259 |
| PspN4I | GGNNCC | 3 cut(s) | 28, 223, 283 |
| PspPI | GGNCC | 4 cut(s) | 4, 27, 222, 282 |
| PstI | CTGCAG | 1 cut(s) | 309 |
| RsaI | GTAC | 1 cut(s) | 212 |
| RsaNI | GTAC | 1 cut(s) | 211 |
| RseI | CAYNNNNRTG | 1 cut(s) | 206 |
| SacI | GAGCTC | 2 cut(s) | 374, 414 |
| SaqAI | TTAA | 2 cut(s) | 164, 522 |
| SatI | GCNGC | 5 cut(s) | 247, 305, 380, 395, 490 |
| Sau3AI | GATC | 2 cut(s) | 151, 532 |
| Sau96I | GGNCC | 4 cut(s) | 4, 27, 222, 282 |
| SduI | GDGCHC | 2 cut(s) | 374, 414 |
| SfaNI | GCATC | 3 cut(s) | 258, 463, 472 |
| SfcI | CTRYAG | 1 cut(s) | 305 |
| SinI | GGWCC | 1 cut(s) | 282 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 206 |
| SmlI | CTYRAG | 1 cut(s) | 521 |
| SmoI | CTYRAG | 1 cut(s) | 521 |
| Sse9I | AATT | 3 cut(s) | 182, 356, 501 |
| SseBI | AGGCCT | 1 cut(s) | 242 |
| SsiI | CCGC | 6 cut(s) | 247, 270, 394, 424, 489, 526 |
| SspMI | CTAG | 2 cut(s) | 20, 365 |
| SstI | GAGCTC | 2 cut(s) | 374, 414 |
| StuI | AGGCCT | 1 cut(s) | 242 |
| StyI | CCWWGG | 4 cut(s) | 30, 364, 384, 459 |
| TaaI | ACNGT | 2 cut(s) | 286, 298 |
| TaiI | ACGT | 3 cut(s) | 106, 122, 171 |
| TaqI | TCGA | 5 cut(s) | 237, 374, 390, 414, 510 |
| TasI | AATT | 3 cut(s) | 182, 356, 501 |
| TauI | GCSGC | 3 cut(s) | 249, 397, 492 |
| TfiI | GAWTC | 1 cut(s) | 264 |
| Tru1I | TTAA | 2 cut(s) | 164, 522 |
| Tru9I | TTAA | 2 cut(s) | 164, 522 |
| TscAI | CASTG | 1 cut(s) | 314 |
| TseFI | GTSAC | 1 cut(s) | 157 |
| TseI | GCWGC | 2 cut(s) | 304, 379 |
| Tsp45I | GTSAC | 1 cut(s) | 157 |
| TspGWI | ACGGA | 2 cut(s) | 75, 278 |
| TspRI | CASTG | 1 cut(s) | 314 |
| Vha464I | CTTAAG | 1 cut(s) | 521 |
| VpaK11BI | GGWCC | 1 cut(s) | 282 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 111 |
| XapI | RAATTY | 2 cut(s) | 356, 501 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XmaJI | CCTAGG | 1 cut(s) | 364 |
| XspI | CTAG | 2 cut(s) | 20, 365 |
| ZraI | GACGTC | 1 cut(s) | 120 |