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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 824 |
| Acc65I | GGTACC | 1 cut(s) | 815 |
| AccB1I | GGYRCC | 4 cut(s) | 243, 563, 599, 815 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 609 |
| AccBSI | CCGCTC | 5 cut(s) | 28, 241, 307, 699, 809 |
| AclWI | GGATC | 4 cut(s) | 375, 394, 731, 861 |
| AcoI | YGGCCR | 3 cut(s) | 420, 492, 792 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AcuI | CTGAAG | 3 cut(s) | 73, 383, 930 |
| AcyI | GRCGYC | 4 cut(s) | 143, 244, 600, 724 |
| AfaI | GTAC | 2 cut(s) | 60, 817 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 253, 306, 364, 409, 609, 665, 893 |
| AflII | CTTAAG | 1 cut(s) | 173 |
| AflIII | ACRYGT | 1 cut(s) | 129 |
| AgsI | TTSAA | 2 cut(s) | 407, 544 |
| AjiI | CACGTC | 1 cut(s) | 313 |
| AjnI | CCWGG | 1 cut(s) | 789 |
| AleI | CACNNNNGTG | 1 cut(s) | 21 |
| AluBI | AGCT | 7 cut(s) | 93, 172, 205, 289, 628, 632, 914 |
| AluI | AGCT | 7 cut(s) | 93, 172, 205, 289, 628, 632, 914 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| AlwI | GGATC | 4 cut(s) | 375, 394, 731, 861 |
| Ama87I | CYCGRG | 2 cut(s) | 32, 804 |
| AoxI | GGCC | 6 cut(s) | 84, 153, 420, 492, 635, 792 |
| ApeKI | GCWGC | 3 cut(s) | 121, 269, 877 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| Asp718I | GGTACC | 1 cut(s) | 815 |
| AspLEI | GCGC | 2 cut(s) | 246, 602 |
| AspS9I | GGNCC | 2 cut(s) | 154, 635 |
| AsuHPI | GGTGA | 3 cut(s) | 289, 397, 448 |
| AsuNHI | GCTAGC | 1 cut(s) | 628 |
| AvaI | CYCGRG | 2 cut(s) | 32, 804 |
| BalI | TGGCCA | 1 cut(s) | 422 |
| BanI | GGYRCC | 4 cut(s) | 243, 563, 599, 815 |
| BauI | CACGAG | 1 cut(s) | 843 |
| BbvCI | CCTCAGC | 3 cut(s) | 432, 474, 741 |
| BbvI | GCAGC | 3 cut(s) | 108, 256, 889 |
| BccI | CCATC | 2 cut(s) | 611, 806 |
| BceAI | ACGGC | 3 cut(s) | 479, 551, 622 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 887, 921 |
| BciT130I | CCWGG | 1 cut(s) | 791 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BfaI | CTAG | 2 cut(s) | 137, 629 |
| BfoI | RGCGCY | 2 cut(s) | 247, 603 |
| BfrI | CTTAAG | 1 cut(s) | 173 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 643 |
| BlpI | GCTNAGC | 1 cut(s) | 94 |
| Bme1390I | CCNGG | 1 cut(s) | 791 |
| BmeT110I | CYCGRG | 2 cut(s) | 32, 804 |
| BmgBI | CACGTC | 1 cut(s) | 313 |
| BmgT120I | GGNCC | 2 cut(s) | 154, 635 |
| BmiI | GGNNCC | 5 cut(s) | 245, 565, 601, 675, 817 |
| BmrFI | CCNGG | 1 cut(s) | 791 |
| BmrI | ACTGGG | 1 cut(s) | 619 |
| BmsI | GCATC | 2 cut(s) | 223, 256 |
| BmtI | GCTAGC | 1 cut(s) | 632 |
| BmuI | ACTGGG | 1 cut(s) | 619 |
| BpmI | CTGGAG | 2 cut(s) | 179, 467 |
| Bpu10I | CCTNAGC | 4 cut(s) | 432, 474, 700, 741 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 94 |
| BsaHI | GRCGYC | 4 cut(s) | 143, 244, 600, 724 |
| BsaJI | CCNNGG | 2 cut(s) | 252, 280 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 173, 203, 317, 347 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 253, 306, 364, 409, 609, 665, 893 |
| Bse1I | ACTGG | 1 cut(s) | 614 |
| BseBI | CCWGG | 1 cut(s) | 791 |
| BseDI | CCNNGG | 2 cut(s) | 252, 280 |
| BseGI | GGATG | 4 cut(s) | 238, 817, 873, 907 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 253, 306, 364, 409, 609, 665, 893 |
| BseMII | CTCAG | 9 cut(s) | 108, 423, 465, 695, 714, 755, 759, 776, 864 |
| BseNI | ACTGG | 1 cut(s) | 614 |
| BseRI | GAGGAG | 1 cut(s) | 194 |
| BseX3I | CGGCCG | 1 cut(s) | 492 |
| BseXI | GCAGC | 3 cut(s) | 108, 256, 889 |
| BseYI | CCCAGC | 3 cut(s) | 205, 624, 632 |
| BsgI | GTGCAG | 1 cut(s) | 107 |
| Bsh1285I | CGRYCG | 1 cut(s) | 495 |
| BshFI | GGCC | 6 cut(s) | 86, 155, 422, 494, 637, 794 |
| BshNI | GGYRCC | 4 cut(s) | 243, 563, 599, 815 |
| BsiEI | CGRYCG | 1 cut(s) | 495 |
| BsiHKCI | CYCGRG | 2 cut(s) | 32, 804 |
| BsiSI | CCGG | 3 cut(s) | 728, 865, 890 |
| BslFI | GGGAC | 2 cut(s) | 323, 607 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 253, 306, 364, 409, 609, 665, 893 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| BsmFI | GGGAC | 2 cut(s) | 323, 607 |
| BsmI | GAATGC | 1 cut(s) | 280 |
| BsnI | GGCC | 6 cut(s) | 86, 155, 422, 494, 637, 794 |
| BsoBI | CYCGRG | 2 cut(s) | 32, 804 |
| Bsp143I | GATC | 6 cut(s) | 66, 183, 367, 399, 736, 853 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 94 |
| BspANI | GGCC | 6 cut(s) | 86, 155, 422, 494, 637, 794 |
| BspCNI | CTCAG | 9 cut(s) | 107, 424, 466, 694, 713, 754, 760, 775, 865 |
| BspLI | GGNNCC | 5 cut(s) | 245, 565, 601, 675, 817 |
| BspOI | GCTAGC | 1 cut(s) | 632 |
| BspPI | GGATC | 4 cut(s) | 375, 394, 731, 861 |
| BspT107I | GGYRCC | 4 cut(s) | 243, 563, 599, 815 |
| BspTI | CTTAAG | 1 cut(s) | 173 |
| BsrBI | CCGCTC | 5 cut(s) | 28, 241, 307, 699, 809 |
| BsrI | ACTGG | 1 cut(s) | 614 |
| BssECI | CCNNGG | 2 cut(s) | 252, 280 |
| BssMI | GATC | 6 cut(s) | 66, 183, 367, 399, 736, 853 |
| BssNI | GRCGYC | 4 cut(s) | 143, 244, 600, 724 |
| BssSI | CACGAG | 1 cut(s) | 843 |
| BssT1I | CCWWGG | 1 cut(s) | 252 |
| Bst2BI | CACGAG | 1 cut(s) | 843 |
| Bst2UI | CCWGG | 1 cut(s) | 791 |
| Bst4CI | ACNGT | 3 cut(s) | 73, 301, 468 |
| Bst6I | CTCTTC | 1 cut(s) | 434 |
| BstACI | GRCGYC | 4 cut(s) | 143, 244, 600, 724 |
| BstAFI | CTTAAG | 1 cut(s) | 173 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 652 |
| BstC8I | GCNNGC | 2 cut(s) | 287, 630 |
| BstDEI | CTNAG | 9 cut(s) | 94, 432, 474, 681, 700, 741, 762, 768, 873 |
| BstDSI | CCRYGG | 1 cut(s) | 280 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 251, 362, 407 |
| BstF5I | GGATG | 4 cut(s) | 238, 817, 873, 907 |
| BstH2I | RGCGCY | 2 cut(s) | 247, 603 |
| BstHHI | GCGC | 2 cut(s) | 246, 602 |
| BstKTI | GATC | 6 cut(s) | 69, 186, 370, 402, 739, 856 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstMBI | GATC | 6 cut(s) | 66, 183, 367, 399, 736, 853 |
| BstMCI | CGRYCG | 1 cut(s) | 495 |
| BstNI | CCWGG | 1 cut(s) | 791 |
| BstNSI | RCATGY | 1 cut(s) | 133 |
| BstSCI | CCNGG | 1 cut(s) | 789 |
| BstV1I | GCAGC | 3 cut(s) | 108, 256, 889 |
| BstX2I | RGATCY | 1 cut(s) | 399 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 632 |
| BstYI | RGATCY | 1 cut(s) | 399 |
| BstZI | CGGCCG | 1 cut(s) | 492 |
| BsuRI | GGCC | 6 cut(s) | 86, 155, 422, 494, 637, 794 |
| BtgI | CCRYGG | 1 cut(s) | 280 |
| BtrI | CACGTC | 1 cut(s) | 313 |
| BtsCI | GGATG | 4 cut(s) | 238, 817, 873, 907 |
| Cac8I | GCNNGC | 2 cut(s) | 287, 630 |
| CfoI | GCGC | 2 cut(s) | 246, 602 |
| Cfr13I | GGNCC | 2 cut(s) | 154, 635 |
| CseI | GACGC | 2 cut(s) | 132, 713 |
| Csp6I | GTAC | 2 cut(s) | 59, 816 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 667, 702 |
| CviAII | CATG | 2 cut(s) | 130, 927 |
| CviQI | GTAC | 2 cut(s) | 59, 816 |
| DdeI | CTNAG | 9 cut(s) | 94, 432, 474, 681, 700, 741, 762, 768, 873 |
| DinI | GGCGCC | 2 cut(s) | 245, 601 |
| DpnI | GATC | 6 cut(s) | 68, 185, 369, 401, 738, 855 |
| DpnII | GATC | 6 cut(s) | 66, 183, 367, 399, 736, 853 |
| EaeI | YGGCCR | 3 cut(s) | 420, 492, 792 |
| EagI | CGGCCG | 1 cut(s) | 492 |
| Eam1104I | CTCTTC | 1 cut(s) | 434 |
| EarI | CTCTTC | 1 cut(s) | 434 |
| EciI | GGCGGA | 1 cut(s) | 539 |
| EclXI | CGGCCG | 1 cut(s) | 492 |
| Eco130I | CCWWGG | 1 cut(s) | 252 |
| Eco52I | CGGCCG | 1 cut(s) | 492 |
| Eco57I | CTGAAG | 3 cut(s) | 73, 383, 930 |
| Eco88I | CYCGRG | 2 cut(s) | 32, 804 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 251, 362, 407 |
| EcoRII | CCWGG | 1 cut(s) | 789 |
| EcoT14I | CCWWGG | 1 cut(s) | 252 |
| EgeI | GGCGCC | 2 cut(s) | 245, 601 |
| EheI | GGCGCC | 2 cut(s) | 245, 601 |
| ErhI | CCWWGG | 1 cut(s) | 252 |
| FaeI | CATG | 2 cut(s) | 133, 930 |
| FaiI | YATR | 6 cut(s) | 131, 353, 531, 801, 824, 928 |
| FaqI | GGGAC | 2 cut(s) | 323, 607 |
| FatI | CATG | 2 cut(s) | 129, 926 |
| FauI | CCCGC | 1 cut(s) | 300 |
| FokI | GGATG | 4 cut(s) | 245, 824, 880, 914 |
| FspBI | CTAG | 2 cut(s) | 137, 629 |
| GlaI | GCGC | 2 cut(s) | 245, 601 |
| GsaI | CCCAGC | 3 cut(s) | 209, 628, 636 |
| GsuI | CTGGAG | 2 cut(s) | 179, 467 |
| HaeII | RGCGCY | 2 cut(s) | 247, 603 |
| HaeIII | GGCC | 6 cut(s) | 86, 155, 422, 494, 637, 794 |
| HapII | CCGG | 3 cut(s) | 728, 865, 890 |
| HgaI | GACGC | 2 cut(s) | 132, 713 |
| HhaI | GCGC | 2 cut(s) | 246, 602 |
| Hin1I | GRCGYC | 4 cut(s) | 143, 244, 600, 724 |
| Hin1II | CATG | 2 cut(s) | 133, 930 |
| Hin6I | GCGC | 2 cut(s) | 244, 600 |
| HinP1I | GCGC | 2 cut(s) | 244, 600 |
| HinfI | GANTC | 4 cut(s) | 413, 481, 620, 748 |
| HpaII | CCGG | 3 cut(s) | 728, 865, 890 |
| HphI | GGTGA | 3 cut(s) | 289, 397, 448 |
| Hpy188I | TCNGA | 4 cut(s) | 769, 853, 858, 874 |
| Hpy188III | TCNNGA | 1 cut(s) | 196 |
| Hpy99I | CGWCG | 2 cut(s) | 500, 572 |
| HpyAV | CCTTC | 4 cut(s) | 97, 358, 413, 550 |
| HpyCH4III | ACNGT | 3 cut(s) | 73, 301, 468 |
| HpyCH4IV | ACGT | 2 cut(s) | 312, 576 |
| HpyCH4V | TGCA | 1 cut(s) | 124 |
| HpyF3I | CTNAG | 9 cut(s) | 94, 432, 474, 681, 700, 741, 762, 768, 873 |
| HpySE526I | ACGT | 2 cut(s) | 312, 576 |
| Hsp92I | GRCGYC | 4 cut(s) | 143, 244, 600, 724 |
| Hsp92II | CATG | 2 cut(s) | 133, 930 |
| HspAI | GCGC | 2 cut(s) | 244, 600 |
| KasI | GGCGCC | 2 cut(s) | 243, 599 |
| KpnI | GGTACC | 1 cut(s) | 819 |
| Kzo9I | GATC | 6 cut(s) | 66, 183, 367, 399, 736, 853 |
| LmnI | GCTCC | 3 cut(s) | 202, 238, 919 |
| Lsp1109I | GCAGC | 3 cut(s) | 108, 256, 889 |
| LweI | GCATC | 2 cut(s) | 223, 256 |
| MaeI | CTAG | 2 cut(s) | 137, 629 |
| MaeII | ACGT | 2 cut(s) | 312, 576 |
| MaeIII | GTNAC | 1 cut(s) | 295 |
| MalI | GATC | 6 cut(s) | 68, 185, 369, 401, 738, 855 |
| MbiI | CCGCTC | 5 cut(s) | 28, 241, 307, 699, 809 |
| MboI | GATC | 6 cut(s) | 66, 183, 367, 399, 736, 853 |
| MboII | GAAGA | 2 cut(s) | 400, 451 |
| MflI | RGATCY | 1 cut(s) | 399 |
| MlsI | TGGCCA | 1 cut(s) | 422 |
| MluCI | AATT | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 422 |
| Mly113I | GGCGCC | 2 cut(s) | 244, 600 |
| MlyI | GAGTC | 2 cut(s) | 629, 742 |
| MmeI | TCCRAC | 1 cut(s) | 831 |
| Mox20I | TGGCCA | 1 cut(s) | 422 |
| MscI | TGGCCA | 1 cut(s) | 422 |
| MseI | TTAA | 4 cut(s) | 75, 174, 216, 513 |
| MslI | CAYNNNNRTG | 1 cut(s) | 21 |
| Msp20I | TGGCCA | 1 cut(s) | 422 |
| MspA1I | CMGCKG | 1 cut(s) | 745 |
| MspCI | CTTAAG | 1 cut(s) | 173 |
| MspI | CCGG | 3 cut(s) | 728, 865, 890 |
| MspR9I | CCNGG | 1 cut(s) | 791 |
| Mva1269I | GAATGC | 1 cut(s) | 280 |
| MvaI | CCWGG | 1 cut(s) | 791 |
| NarI | GGCGCC | 2 cut(s) | 244, 600 |
| NdeII | GATC | 6 cut(s) | 66, 183, 367, 399, 736, 853 |
| NheI | GCTAGC | 1 cut(s) | 628 |
| NlaIII | CATG | 2 cut(s) | 133, 930 |
| NlaIV | GGNNCC | 5 cut(s) | 245, 565, 601, 675, 817 |
| NmuCI | GTSAC | 1 cut(s) | 295 |
| NspI | RCATGY | 1 cut(s) | 133 |
| OliI | CACNNNNGTG | 1 cut(s) | 21 |
| PciI | ACATGT | 1 cut(s) | 129 |
| PctI | GAATGC | 1 cut(s) | 280 |
| PfeI | GAWTC | 2 cut(s) | 413, 481 |
| PflFI | GACNNNGTC | 1 cut(s) | 611 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 609 |
| PleI | GAGTC | 2 cut(s) | 628, 742 |
| PluTI | GGCGCC | 2 cut(s) | 247, 603 |
| PpsI | GAGTC | 2 cut(s) | 628, 742 |
| PscI | ACATGT | 1 cut(s) | 129 |
| PsiI | TTATAA | 1 cut(s) | 824 |
| Psp6I | CCWGG | 1 cut(s) | 789 |
| PspFI | CCCAGC | 3 cut(s) | 205, 624, 632 |
| PspGI | CCWGG | 1 cut(s) | 789 |
| PspN4I | GGNNCC | 5 cut(s) | 245, 565, 601, 675, 817 |
| PspPI | GGNCC | 2 cut(s) | 154, 635 |
| PsuI | RGATCY | 1 cut(s) | 399 |
| PsyI | GACNNNGTC | 1 cut(s) | 611 |
| RsaI | GTAC | 2 cut(s) | 60, 817 |
| RsaNI | GTAC | 2 cut(s) | 59, 816 |
| RseI | CAYNNNNRTG | 1 cut(s) | 21 |
| SaqAI | TTAA | 4 cut(s) | 75, 174, 216, 513 |
| Sau3AI | GATC | 6 cut(s) | 66, 183, 367, 399, 736, 853 |
| Sau96I | GGNCC | 2 cut(s) | 154, 635 |
| SchI | GAGTC | 2 cut(s) | 629, 742 |
| ScrFI | CCNGG | 1 cut(s) | 791 |
| SfaNI | GCATC | 2 cut(s) | 223, 256 |
| SfoI | GGCGCC | 2 cut(s) | 245, 601 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 21 |
| SmlI | CTYRAG | 1 cut(s) | 173 |
| SmoI | CTYRAG | 1 cut(s) | 173 |
| Sse9I | AATT | 1 cut(s) | 5 |
| SspDI | GGCGCC | 2 cut(s) | 243, 599 |
| SspMI | CTAG | 2 cut(s) | 137, 629 |
| StyD4I | CCNGG | 1 cut(s) | 789 |
| StyI | CCWWGG | 1 cut(s) | 252 |
| TaaI | ACNGT | 3 cut(s) | 73, 301, 468 |
| TaiI | ACGT | 2 cut(s) | 315, 579 |
| TaqI | TCGA | 3 cut(s) | 65, 463, 606 |
| TasI | AATT | 1 cut(s) | 5 |
| TauI | GCSGC | 9 cut(s) | 31, 143, 244, 380, 491, 494, 554, 797, 889 |
| TfiI | GAWTC | 2 cut(s) | 413, 481 |
| Tru1I | TTAA | 4 cut(s) | 75, 174, 216, 513 |
| Tru9I | TTAA | 4 cut(s) | 75, 174, 216, 513 |
| TseFI | GTSAC | 1 cut(s) | 295 |
| TseI | GCWGC | 3 cut(s) | 121, 269, 877 |
| Tsp45I | GTSAC | 1 cut(s) | 295 |
| Tth111I | GACNNNGTC | 1 cut(s) | 611 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 609 |
| Vha464I | CTTAAG | 1 cut(s) | 173 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 251, 362, 407 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XceI | RCATGY | 1 cut(s) | 133 |
| XspI | CTAG | 2 cut(s) | 137, 629 |