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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 101, 274 |
| AccBSI | CCGCTC | 2 cut(s) | 13, 217 |
| AccII | CGCG | 1 cut(s) | 181 |
| AclWI | GGATC | 1 cut(s) | 291 |
| AcoI | YGGCCR | 2 cut(s) | 141, 195 |
| AcyI | GRCGYC | 1 cut(s) | 275 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 48, 150, 204, 370 |
| AflIII | ACRYGT | 1 cut(s) | 249 |
| AgsI | TTSAA | 1 cut(s) | 413 |
| AjiI | CACGTC | 1 cut(s) | 211 |
| AjnI | CCWGG | 1 cut(s) | 93 |
| Alw26I | GTCTC | 2 cut(s) | 235, 304 |
| AlwI | GGATC | 1 cut(s) | 291 |
| Ama87I | CYCGRG | 2 cut(s) | 329, 364 |
| AoxI | GGCC | 4 cut(s) | 141, 195, 326, 341 |
| ApeKI | GCWGC | 1 cut(s) | 303 |
| AspLEI | GCGC | 2 cut(s) | 181, 277 |
| AspS9I | GGNCC | 2 cut(s) | 88, 327 |
| AsuC2I | CCSGG | 3 cut(s) | 152, 365, 366 |
| AsuHPI | GGTGA | 3 cut(s) | 166, 346, 362 |
| AvaI | CYCGRG | 2 cut(s) | 329, 364 |
| AvaII | GGWCC | 1 cut(s) | 88 |
| BanI | GGYRCC | 2 cut(s) | 101, 274 |
| BbvI | GCAGC | 1 cut(s) | 315 |
| BccI | CCATC | 1 cut(s) | 92 |
| BceAI | ACGGC | 4 cut(s) | 18, 128, 159, 182 |
| BciT130I | CCWGG | 1 cut(s) | 95 |
| BclI | TGATCA | 1 cut(s) | 223 |
| BcnI | CCSGG | 3 cut(s) | 152, 365, 366 |
| BcoDI | GTCTC | 2 cut(s) | 235, 304 |
| BfaI | CTAG | 1 cut(s) | 320 |
| BfmI | CTRYAG | 1 cut(s) | 261 |
| BfoI | RGCGCY | 1 cut(s) | 278 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 80, 405 |
| BisI | GCNGC | 4 cut(s) | 141, 182, 189, 304 |
| BlsI | GCNGC | 4 cut(s) | 142, 183, 190, 305 |
| Bme1390I | CCNGG | 4 cut(s) | 95, 152, 365, 366 |
| Bme18I | GGWCC | 1 cut(s) | 88 |
| BmeT110I | CYCGRG | 2 cut(s) | 329, 364 |
| BmgBI | CACGTC | 1 cut(s) | 211 |
| BmgT120I | GGNCC | 2 cut(s) | 88, 327 |
| BmiI | GGNNCC | 4 cut(s) | 40, 89, 103, 276 |
| BmrFI | CCNGG | 4 cut(s) | 95, 152, 365, 366 |
| BmsI | GCATC | 1 cut(s) | 61 |
| BpmI | CTGGAG | 1 cut(s) | 77 |
| BpuMI | CCSGG | 3 cut(s) | 152, 365, 366 |
| BsaHI | GRCGYC | 1 cut(s) | 275 |
| BsaJI | CCNNGG | 6 cut(s) | 34, 278, 330, 364, 365, 400 |
| BsaWI | WCCGGW | 1 cut(s) | 201 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 48, 150, 204, 370 |
| BseBI | CCWGG | 1 cut(s) | 95 |
| BseDI | CCNNGG | 6 cut(s) | 34, 278, 330, 364, 365, 400 |
| BseGI | GGATG | 3 cut(s) | 76, 103, 135 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 48, 150, 204, 370 |
| BseX3I | CGGCCG | 1 cut(s) | 141 |
| BseXI | GCAGC | 1 cut(s) | 315 |
| Bsh1236I | CGCG | 1 cut(s) | 181 |
| Bsh1285I | CGRYCG | 2 cut(s) | 31, 144 |
| BshFI | GGCC | 4 cut(s) | 143, 197, 328, 343 |
| BshNI | GGYRCC | 2 cut(s) | 101, 274 |
| BsiEI | CGRYCG | 2 cut(s) | 31, 144 |
| BsiHKCI | CYCGRG | 2 cut(s) | 329, 364 |
| BsiSI | CCGG | 5 cut(s) | 151, 202, 239, 344, 365 |
| BslFI | GGGAC | 3 cut(s) | 221, 238, 382 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 48, 150, 204, 370 |
| BsmAI | GTCTC | 2 cut(s) | 235, 304 |
| BsmFI | GGGAC | 3 cut(s) | 221, 238, 382 |
| BsmI | GAATGC | 1 cut(s) | 408 |
| BsnI | GGCC | 4 cut(s) | 143, 197, 328, 343 |
| BsoBI | CYCGRG | 2 cut(s) | 329, 364 |
| Bsp143I | GATC | 4 cut(s) | 28, 223, 265, 296 |
| BspANI | GGCC | 4 cut(s) | 143, 197, 328, 343 |
| BspFNI | CGCG | 1 cut(s) | 181 |
| BspLI | GGNNCC | 4 cut(s) | 40, 89, 103, 276 |
| BspPI | GGATC | 1 cut(s) | 291 |
| BspT107I | GGYRCC | 2 cut(s) | 101, 274 |
| BsrBI | CCGCTC | 2 cut(s) | 13, 217 |
| BssECI | CCNNGG | 6 cut(s) | 34, 278, 330, 364, 365, 400 |
| BssMI | GATC | 4 cut(s) | 28, 223, 265, 296 |
| BssNI | GRCGYC | 1 cut(s) | 275 |
| BssT1I | CCWWGG | 2 cut(s) | 278, 400 |
| Bst2UI | CCWGG | 1 cut(s) | 95 |
| Bst4CI | ACNGT | 1 cut(s) | 136 |
| Bst6I | CTCTTC | 1 cut(s) | 332 |
| BstACI | GRCGYC | 1 cut(s) | 275 |
| BstC8I | GCNNGC | 2 cut(s) | 186, 361 |
| BstDSI | CCRYGG | 1 cut(s) | 34 |
| BstF5I | GGATG | 3 cut(s) | 76, 103, 135 |
| BstFNI | CGCG | 1 cut(s) | 181 |
| BstH2I | RGCGCY | 1 cut(s) | 278 |
| BstHHI | GCGC | 2 cut(s) | 181, 277 |
| BstKTI | GATC | 4 cut(s) | 31, 226, 268, 299 |
| BstMAI | GTCTC | 2 cut(s) | 235, 304 |
| BstMBI | GATC | 4 cut(s) | 28, 223, 265, 296 |
| BstMCI | CGRYCG | 2 cut(s) | 31, 144 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 10, 80, 185, 194, 325, 405 |
| BstNI | CCWGG | 1 cut(s) | 95 |
| BstNSI | RCATGY | 1 cut(s) | 253 |
| BstSCI | CCNGG | 4 cut(s) | 93, 150, 363, 364 |
| BstSFI | CTRYAG | 1 cut(s) | 261 |
| BstUI | CGCG | 1 cut(s) | 181 |
| BstV1I | GCAGC | 1 cut(s) | 315 |
| BstX2I | RGATCY | 1 cut(s) | 296 |
| BstYI | RGATCY | 1 cut(s) | 296 |
| BstZI | CGGCCG | 1 cut(s) | 141 |
| BsuRI | GGCC | 4 cut(s) | 143, 197, 328, 343 |
| BtgI | CCRYGG | 1 cut(s) | 34 |
| BtrI | CACGTC | 1 cut(s) | 211 |
| BtsCI | GGATG | 3 cut(s) | 76, 103, 135 |
| Cac8I | GCNNGC | 2 cut(s) | 186, 361 |
| CfoI | GCGC | 2 cut(s) | 181, 277 |
| Cfr13I | GGNCC | 2 cut(s) | 88, 327 |
| Cfr9I | CCCGGG | 1 cut(s) | 364 |
| CviAII | CATG | 2 cut(s) | 227, 250 |
| CviJI | RGCY | 6 cut(s) | 143, 197, 238, 328, 343, 393 |
| CviKI_1 | RGCY | 6 cut(s) | 143, 197, 238, 328, 343, 393 |
| DinI | GGCGCC | 1 cut(s) | 276 |
| DpnI | GATC | 4 cut(s) | 30, 225, 267, 298 |
| DpnII | GATC | 4 cut(s) | 28, 223, 265, 296 |
| EaeI | YGGCCR | 2 cut(s) | 141, 195 |
| EagI | CGGCCG | 1 cut(s) | 141 |
| Eam1104I | CTCTTC | 1 cut(s) | 332 |
| EarI | CTCTTC | 1 cut(s) | 332 |
| EciI | GGCGGA | 2 cut(s) | 31, 142 |
| EclXI | CGGCCG | 1 cut(s) | 141 |
| Eco130I | CCWWGG | 2 cut(s) | 278, 400 |
| Eco47I | GGWCC | 1 cut(s) | 88 |
| Eco52I | CGGCCG | 1 cut(s) | 141 |
| Eco88I | CYCGRG | 2 cut(s) | 329, 364 |
| EcoO109I | RGGNCCY | 1 cut(s) | 88 |
| EcoRII | CCWGG | 1 cut(s) | 93 |
| EcoT14I | CCWWGG | 2 cut(s) | 278, 400 |
| EgeI | GGCGCC | 1 cut(s) | 276 |
| EheI | GGCGCC | 1 cut(s) | 276 |
| ErhI | CCWWGG | 2 cut(s) | 278, 400 |
| FaeI | CATG | 2 cut(s) | 230, 253 |
| FaiI | YATR | 3 cut(s) | 228, 251, 430 |
| FaqI | GGGAC | 3 cut(s) | 221, 238, 382 |
| FatI | CATG | 2 cut(s) | 226, 249 |
| FauI | CCCGC | 4 cut(s) | 55, 112, 308, 380 |
| FbaI | TGATCA | 1 cut(s) | 223 |
| Fnu4HI | GCNGC | 4 cut(s) | 141, 182, 189, 304 |
| FokI | GGATG | 3 cut(s) | 83, 110, 142 |
| Fsp4HI | GCNGC | 4 cut(s) | 141, 182, 189, 304 |
| FspBI | CTAG | 1 cut(s) | 320 |
| GlaI | GCGC | 2 cut(s) | 180, 276 |
| GluI | GCNGC | 4 cut(s) | 141, 182, 189, 304 |
| GsuI | CTGGAG | 1 cut(s) | 77 |
| HaeII | RGCGCY | 1 cut(s) | 278 |
| HaeIII | GGCC | 4 cut(s) | 143, 197, 328, 343 |
| HapII | CCGG | 5 cut(s) | 151, 202, 239, 344, 365 |
| HhaI | GCGC | 2 cut(s) | 181, 277 |
| Hin1I | GRCGYC | 1 cut(s) | 275 |
| Hin1II | CATG | 2 cut(s) | 230, 253 |
| Hin6I | GCGC | 2 cut(s) | 179, 275 |
| HinP1I | GCGC | 2 cut(s) | 179, 275 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HinfI | GANTC | 1 cut(s) | 77 |
| HpaII | CCGG | 5 cut(s) | 151, 202, 239, 344, 365 |
| HphI | GGTGA | 3 cut(s) | 166, 346, 362 |
| Hpy166II | GTNNAC | 1 cut(s) | 148 |
| Hpy188III | TCNNGA | 1 cut(s) | 413 |
| Hpy8I | GTNNAC | 1 cut(s) | 148 |
| Hpy99I | CGWCG | 1 cut(s) | 50 |
| HpyCH4III | ACNGT | 1 cut(s) | 136 |
| HpyCH4IV | ACGT | 1 cut(s) | 210 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 10, 80, 185, 194, 325, 405 |
| HpySE526I | ACGT | 1 cut(s) | 210 |
| Hsp92I | GRCGYC | 1 cut(s) | 275 |
| Hsp92II | CATG | 2 cut(s) | 230, 253 |
| HspAI | GCGC | 2 cut(s) | 179, 275 |
| KasI | GGCGCC | 1 cut(s) | 274 |
| Ksp22I | TGATCA | 1 cut(s) | 223 |
| Kzo9I | GATC | 4 cut(s) | 28, 223, 265, 296 |
| LmnI | GCTCC | 2 cut(s) | 214, 241 |
| LpnPI | CCDG | 7 cut(s) | 80, 107, 164, 215, 252, 357, 378 |
| Lsp1109I | GCAGC | 1 cut(s) | 315 |
| LweI | GCATC | 1 cut(s) | 61 |
| MaeI | CTAG | 1 cut(s) | 320 |
| MaeII | ACGT | 1 cut(s) | 210 |
| MaeIII | GTNAC | 1 cut(s) | 23 |
| MalI | GATC | 4 cut(s) | 30, 225, 267, 298 |
| MbiI | CCGCTC | 2 cut(s) | 13, 217 |
| MboI | GATC | 4 cut(s) | 28, 223, 265, 296 |
| MboII | GAAGA | 3 cut(s) | 297, 300, 349 |
| MflI | RGATCY | 1 cut(s) | 296 |
| Mly113I | GGCGCC | 1 cut(s) | 275 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MspI | CCGG | 5 cut(s) | 151, 202, 239, 344, 365 |
| MspR9I | CCNGG | 4 cut(s) | 95, 152, 365, 366 |
| Mva1269I | GAATGC | 1 cut(s) | 408 |
| MvaI | CCWGG | 1 cut(s) | 95 |
| MvnI | CGCG | 1 cut(s) | 181 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 10, 80, 185, 194, 325, 405 |
| NarI | GGCGCC | 1 cut(s) | 275 |
| NciI | CCSGG | 3 cut(s) | 152, 365, 366 |
| NdeII | GATC | 4 cut(s) | 28, 223, 265, 296 |
| NlaIII | CATG | 2 cut(s) | 230, 253 |
| NlaIV | GGNNCC | 4 cut(s) | 40, 89, 103, 276 |
| NmeAIII | GCCGAG | 1 cut(s) | 100 |
| NspI | RCATGY | 1 cut(s) | 253 |
| PciI | ACATGT | 1 cut(s) | 249 |
| PctI | GAATGC | 1 cut(s) | 408 |
| PfoI | TCCNGGA | 1 cut(s) | 93 |
| PkrI | GCNGC | 4 cut(s) | 142, 183, 190, 305 |
| Ple19I | CGATCG | 1 cut(s) | 31 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PluTI | GGCGCC | 1 cut(s) | 278 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| PpuMI | RGGWCCY | 1 cut(s) | 88 |
| PscI | ACATGT | 1 cut(s) | 249 |
| Psp5II | RGGWCCY | 1 cut(s) | 88 |
| Psp6I | CCWGG | 1 cut(s) | 93 |
| PspGI | CCWGG | 1 cut(s) | 93 |
| PspN4I | GGNNCC | 4 cut(s) | 40, 89, 103, 276 |
| PspPI | GGNCC | 2 cut(s) | 88, 327 |
| PspPPI | RGGWCCY | 1 cut(s) | 88 |
| PsuI | RGATCY | 1 cut(s) | 296 |
| PvuI | CGATCG | 1 cut(s) | 31 |
| SatI | GCNGC | 4 cut(s) | 141, 182, 189, 304 |
| Sau3AI | GATC | 4 cut(s) | 28, 223, 265, 296 |
| Sau96I | GGNCC | 2 cut(s) | 88, 327 |
| SchI | GAGTC | 1 cut(s) | 86 |
| ScrFI | CCNGG | 4 cut(s) | 95, 152, 365, 366 |
| SetI | ASST | 2 cut(s) | 213, 336 |
| SfaNI | GCATC | 1 cut(s) | 61 |
| SfcI | CTRYAG | 1 cut(s) | 261 |
| SfoI | GGCGCC | 1 cut(s) | 276 |
| SinI | GGWCC | 1 cut(s) | 88 |
| SmaI | CCCGGG | 1 cut(s) | 366 |
| SspDI | GGCGCC | 1 cut(s) | 274 |
| SspMI | CTAG | 1 cut(s) | 320 |
| StyD4I | CCNGG | 4 cut(s) | 93, 150, 363, 364 |
| StyI | CCWWGG | 2 cut(s) | 278, 400 |
| TaaI | ACNGT | 1 cut(s) | 136 |
| TaiI | ACGT | 1 cut(s) | 213 |
| TauI | GCSGC | 3 cut(s) | 143, 184, 191 |
| TseI | GCWGC | 1 cut(s) | 303 |
| TspGWI | ACGGA | 1 cut(s) | 386 |
| TspMI | CCCGGG | 1 cut(s) | 364 |
| VpaK11BI | GGWCC | 1 cut(s) | 88 |
| XceI | RCATGY | 1 cut(s) | 253 |
| XmaI | CCCGGG | 1 cut(s) | 364 |
| XspI | CTAG | 1 cut(s) | 320 |