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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 344, 700 |
| Acc36I | ACCTGC | 3 cut(s) | 344, 700, 969 |
| Acc65I | GGTACC | 1 cut(s) | 335 |
| AccB1I | GGYRCC | 1 cut(s) | 335 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 588 |
| AccBSI | CCGCTC | 6 cut(s) | 244, 884, 1349, 1378, 1528, 1696 |
| AccI | GTMKAC | 2 cut(s) | 1002, 1283 |
| AccIII | TCCGGA | 1 cut(s) | 1153 |
| AclWI | GGATC | 1 cut(s) | 1708 |
| AcoI | YGGCCR | 4 cut(s) | 798, 1379, 1827, 1905 |
| AcsI | RAATTY | 3 cut(s) | 537, 573, 715 |
| AcuI | CTGAAG | 5 cut(s) | 675, 761, 1412, 1604, 2025 |
| AcvI | CACGTG | 1 cut(s) | 1019 |
| AcyI | GRCGYC | 3 cut(s) | 1059, 1673, 2150 |
| AfaI | GTAC | 3 cut(s) | 337, 401, 1592 |
| AfeI | AGCGCT | 2 cut(s) | 606, 738 |
| AflIII | ACRYGT | 4 cut(s) | 48, 585, 905, 1016 |
| AgeI | ACCGGT | 2 cut(s) | 402, 983 |
| AgsI | TTSAA | 6 cut(s) | 391, 1028, 1655, 2036, 2044, 2237 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 769 |
| AjiI | CACGTC | 3 cut(s) | 49, 1480, 1843 |
| AjnI | CCWGG | 7 cut(s) | 1101, 1399, 1572, 1686, 1716, 1952, 2333 |
| AleI | CACNNNNGTG | 1 cut(s) | 1421 |
| AluBI | AGCT | 9 cut(s) | 251, 424, 745, 1073, 1250, 1624, 1819, 1870, 2003 |
| AluI | AGCT | 9 cut(s) | 251, 424, 745, 1073, 1250, 1624, 1819, 1870, 2003 |
| Alw21I | GWGCWC | 3 cut(s) | 486, 528, 2245 |
| Alw26I | GTCTC | 3 cut(s) | 1100, 1478, 1867 |
| Alw44I | GTGCAC | 1 cut(s) | 482 |
| AlwI | GGATC | 1 cut(s) | 1708 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 942, 1687 |
| Ama87I | CYCGRG | 2 cut(s) | 2159, 2248 |
| Aor13HI | TCCGGA | 1 cut(s) | 1153 |
| Aor51HI | AGCGCT | 2 cut(s) | 606, 738 |
| ApaI | GGGCCC | 2 cut(s) | 1498, 2098 |
| ApaLI | GTGCAC | 1 cut(s) | 482 |
| ApoI | RAATTY | 3 cut(s) | 537, 573, 715 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 323, 355, 1426, 1458 |
| AsiGI | ACCGGT | 2 cut(s) | 402, 983 |
| Asp718I | GGTACC | 1 cut(s) | 335 |
| AspLEI | GCGC | 9 cut(s) | 62, 607, 693, 739, 894, 1297, 1516, 2018, 2132 |
| AsuC2I | CCSGG | 4 cut(s) | 40, 411, 1038, 1123 |
| AsuHPI | GGTGA | 7 cut(s) | 724, 973, 1159, 1201, 1978, 1994, 2294 |
| AsuNHI | GCTAGC | 2 cut(s) | 247, 601 |
| AvaI | CYCGRG | 2 cut(s) | 2159, 2248 |
| AvaII | GGWCC | 7 cut(s) | 641, 786, 828, 1078, 1353, 1523, 2011 |
| BaeGI | GKGCMC | 3 cut(s) | 486, 1498, 2098 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 327, 360 |
| BalI | TGGCCA | 2 cut(s) | 800, 1829 |
| BanI | GGYRCC | 1 cut(s) | 335 |
| BanII | GRGCYC | 3 cut(s) | 1317, 1498, 2098 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 411, 443 |
| BauI | CACGAG | 2 cut(s) | 485, 1809 |
| BbrPI | CACGTG | 1 cut(s) | 1019 |
| Bbv12I | GWGCWC | 3 cut(s) | 486, 528, 2245 |
| BccI | CCATC | 3 cut(s) | 358, 1366, 2350 |
| BceAI | ACGGC | 5 cut(s) | 248, 356, 362, 1007, 1246 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1046, 1080, 1374, 1408 |
| BciT130I | CCWGG | 7 cut(s) | 1103, 1401, 1574, 1688, 1718, 1954, 2335 |
| BciVI | GTATCC | 1 cut(s) | 1783 |
| BcnI | CCSGG | 4 cut(s) | 40, 411, 1038, 1123 |
| BcoDI | GTCTC | 3 cut(s) | 1100, 1478, 1867 |
| BfaI | CTAG | 6 cut(s) | 131, 201, 248, 252, 602, 2099 |
| BfmI | CTRYAG | 4 cut(s) | 700, 804, 1800, 1934 |
| BfoI | RGCGCY | 4 cut(s) | 608, 694, 740, 2133 |
| BfuAI | ACCTGC | 3 cut(s) | 344, 700, 969 |
| BfuI | GTATCC | 1 cut(s) | 1783 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1127 |
| BlpI | GCTNAGC | 2 cut(s) | 1134, 2175 |
| Bme18I | GGWCC | 7 cut(s) | 641, 786, 828, 1078, 1353, 1523, 2011 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 769 |
| BmeT110I | CYCGRG | 2 cut(s) | 2159, 2248 |
| BmgBI | CACGTC | 3 cut(s) | 49, 1480, 1843 |
| BmrI | ACTGGG | 2 cut(s) | 2149, 2302 |
| BmsI | GCATC | 6 cut(s) | 447, 461, 1216, 1786, 1795, 2103 |
| BmtI | GCTAGC | 2 cut(s) | 251, 605 |
| BmuI | ACTGGG | 2 cut(s) | 2149, 2302 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 498, 530, 2252, 2284, 2254, 2286 |
| BpmI | CTGGAG | 4 cut(s) | 1124, 1184, 1892, 1913 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1134, 2175 |
| BpuEI | CTTGAG | 3 cut(s) | 1514, 1745, 2333 |
| BpuMI | CCSGG | 4 cut(s) | 40, 411, 1038, 1123 |
| Bsa29I | ATCGAT | 2 cut(s) | 455, 1926 |
| BsaAI | YACGTR | 1 cut(s) | 1019 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1928 |
| BsaHI | GRCGYC | 3 cut(s) | 1059, 1673, 2150 |
| BsaI | GGTCTC | 1 cut(s) | 1478 |
| BsaWI | WCCGGW | 3 cut(s) | 402, 983, 1153 |
| Bse118I | RCCGGY | 5 cut(s) | 402, 983, 1381, 2206, 2275 |
| Bse1I | ACTGG | 7 cut(s) | 525, 681, 782, 1174, 1980, 2144, 2308 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1928 |
| BseAI | TCCGGA | 1 cut(s) | 1153 |
| BseBI | CCWGG | 7 cut(s) | 1103, 1401, 1574, 1688, 1718, 1954, 2335 |
| BseCI | ATCGAT | 2 cut(s) | 455, 1926 |
| BseGI | GGATG | 4 cut(s) | 369, 402, 1377, 1480 |
| BseJI | GATNNNNATC | 1 cut(s) | 1928 |
| BseMII | CTCAG | 7 cut(s) | 183, 749, 1148, 1349, 1717, 1988, 2189 |
| BseNI | ACTGG | 7 cut(s) | 525, 681, 782, 1174, 1980, 2144, 2308 |
| BseRI | GAGGAG | 5 cut(s) | 968, 1484, 1724, 1976, 2289 |
| BseSI | GKGCMC | 3 cut(s) | 486, 1498, 2098 |
| BseX3I | CGGCCG | 1 cut(s) | 1379 |
| BseYI | CCCAGC | 5 cut(s) | 1250, 1367, 2090, 2154, 2289 |
| BsgI | GTGCAG | 1 cut(s) | 647 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1382, 2276 |
| BshNI | GGYRCC | 1 cut(s) | 335 |
| BshTI | ACCGGT | 2 cut(s) | 402, 983 |
| BshVI | ATCGAT | 2 cut(s) | 455, 1926 |
| BsiEI | CGRYCG | 2 cut(s) | 1382, 2276 |
| BsiHKAI | GWGCWC | 3 cut(s) | 486, 528, 2245 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2159, 2248 |
| BsiWI | CGTACG | 1 cut(s) | 1590 |
| BslFI | GGGAC | 9 cut(s) | 654, 776, 799, 1366, 1853, 1870, 2024, 2137, 2186 |
| BsmAI | GTCTC | 3 cut(s) | 1100, 1478, 1867 |
| BsmBI | CGTCTC | 1 cut(s) | 1100 |
| BsmFI | GGGAC | 9 cut(s) | 654, 776, 799, 1366, 1853, 1870, 2024, 2137, 2186 |
| BsmI | GAATGC | 3 cut(s) | 1629, 2039, 2071 |
| Bso31I | GGTCTC | 1 cut(s) | 1478 |
| BsoBI | CYCGRG | 2 cut(s) | 2159, 2248 |
| Bsp120I | GGGCCC | 2 cut(s) | 1494, 2094 |
| Bsp1286I | GDGCHC | 6 cut(s) | 486, 528, 1317, 1498, 2098, 2245 |
| Bsp13I | TCCGGA | 1 cut(s) | 1153 |
| Bsp143I | GATC | 3 cut(s) | 747, 1713, 1923 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1134, 2175 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspCNI | CTCAG | 7 cut(s) | 184, 750, 1147, 1348, 1716, 1989, 2188 |
| BspDI | ATCGAT | 2 cut(s) | 455, 1926 |
| BspEI | TCCGGA | 1 cut(s) | 1153 |
| BspHI | TCATGA | 1 cut(s) | 1602 |
| BspMAI | CTGCAG | 4 cut(s) | 704, 808, 1804, 1938 |
| BspMI | ACCTGC | 3 cut(s) | 344, 700, 969 |
| BspOI | GCTAGC | 2 cut(s) | 251, 605 |
| BspPI | GGATC | 1 cut(s) | 1708 |
| BspQI | GCTCTTC | 1 cut(s) | 2207 |
| BspT107I | GGYRCC | 1 cut(s) | 335 |
| BspTNI | GGTCTC | 1 cut(s) | 1478 |
| BsrBI | CCGCTC | 6 cut(s) | 244, 884, 1349, 1378, 1528, 1696 |
| BsrFI | RCCGGY | 5 cut(s) | 402, 983, 1381, 2206, 2275 |
| BsrI | ACTGG | 7 cut(s) | 525, 681, 782, 1174, 1980, 2144, 2308 |
| BssAI | RCCGGY | 5 cut(s) | 402, 983, 1381, 2206, 2275 |
| BssMI | GATC | 3 cut(s) | 747, 1713, 1923 |
| BssNI | GRCGYC | 3 cut(s) | 1059, 1673, 2150 |
| BssSI | CACGAG | 2 cut(s) | 485, 1809 |
| BssT1I | CCWWGG | 6 cut(s) | 158, 171, 502, 694, 1219, 1911 |
| Bst2BI | CACGAG | 2 cut(s) | 485, 1809 |
| Bst2UI | CCWGG | 7 cut(s) | 1103, 1401, 1574, 1688, 1718, 1954, 2335 |
| Bst4CI | ACNGT | 9 cut(s) | 260, 335, 439, 481, 627, 649, 1082, 1144, 2049 |
| Bst6I | CTCTTC | 4 cut(s) | 909, 1271, 1461, 2207 |
| BstACI | GRCGYC | 3 cut(s) | 1059, 1673, 2150 |
| BstBAI | YACGTR | 1 cut(s) | 1019 |
| BstDEI | CTNAG | 8 cut(s) | 192, 758, 1134, 1335, 1677, 1703, 1997, 2175 |
| BstDSI | CCRYGG | 3 cut(s) | 171, 648, 1563 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1781, 1892, 1937 |
| BstF5I | GGATG | 4 cut(s) | 369, 402, 1377, 1480 |
| BstH2I | RGCGCY | 4 cut(s) | 608, 694, 740, 2133 |
| BstHHI | GCGC | 9 cut(s) | 62, 607, 693, 739, 894, 1297, 1516, 2018, 2132 |
| BstKTI | GATC | 3 cut(s) | 750, 1716, 1926 |
| BstMAI | GTCTC | 3 cut(s) | 1100, 1478, 1867 |
| BstMBI | GATC | 3 cut(s) | 747, 1713, 1923 |
| BstMCI | CGRYCG | 2 cut(s) | 1382, 2276 |
| BstNI | CCWGG | 7 cut(s) | 1103, 1401, 1574, 1688, 1718, 1954, 2335 |
| BstNSI | RCATGY | 2 cut(s) | 589, 1885 |
| BstSFI | CTRYAG | 4 cut(s) | 700, 804, 1800, 1934 |
| BstSLI | GKGCMC | 3 cut(s) | 486, 1498, 2098 |
| BstX2I | RGATCY | 1 cut(s) | 1713 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1075 |
| BstYI | RGATCY | 1 cut(s) | 1713 |
| BstZI | CGGCCG | 1 cut(s) | 1379 |
| Bsu15I | ATCGAT | 2 cut(s) | 455, 1926 |
| BsuI | GTATCC | 1 cut(s) | 1783 |
| BsuTUI | ATCGAT | 2 cut(s) | 455, 1926 |
| BtgI | CCRYGG | 3 cut(s) | 171, 648, 1563 |
| BtgZI | GCGATG | 3 cut(s) | 1239, 1597, 2084 |
| BtrI | CACGTC | 3 cut(s) | 49, 1480, 1843 |
| BtsCI | GGATG | 4 cut(s) | 369, 402, 1377, 1480 |
| BtsI | GCAGTG | 3 cut(s) | 34, 801, 1359 |
| BtsIMutI | CAGTG | 6 cut(s) | 34, 265, 274, 518, 801, 1359 |
| BveI | ACCTGC | 3 cut(s) | 344, 700, 969 |
| CaiI | CAGNNNCTG | 2 cut(s) | 942, 1687 |
| CciI | TCATGA | 1 cut(s) | 1602 |
| CfoI | GCGC | 9 cut(s) | 62, 607, 693, 739, 894, 1297, 1516, 2018, 2132 |
| Cfr10I | RCCGGY | 5 cut(s) | 402, 983, 1381, 2206, 2275 |
| Cfr42I | CCGCGG | 1 cut(s) | 1566 |
| ClaI | ATCGAT | 2 cut(s) | 455, 1926 |
| CseI | GACGC | 8 cut(s) | 80, 176, 913, 1067, 1201, 1427, 1662, 2139 |
| Csp6I | GTAC | 3 cut(s) | 336, 400, 1591 |
| CspAI | ACCGGT | 2 cut(s) | 402, 983 |
| CviAII | CATG | 8 cut(s) | 104, 172, 586, 769, 1603, 1859, 1882, 2218 |
| CviQI | GTAC | 3 cut(s) | 336, 400, 1591 |
| DdeI | CTNAG | 8 cut(s) | 192, 758, 1134, 1335, 1677, 1703, 1997, 2175 |
| DpnI | GATC | 3 cut(s) | 749, 1715, 1925 |
| DpnII | GATC | 3 cut(s) | 747, 1713, 1923 |
| DriI | GACNNNNNGTC | 1 cut(s) | 769 |
| EaeI | YGGCCR | 4 cut(s) | 798, 1379, 1827, 1905 |
| EagI | CGGCCG | 1 cut(s) | 1379 |
| Eam1104I | CTCTTC | 4 cut(s) | 909, 1271, 1461, 2207 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 769 |
| EarI | CTCTTC | 4 cut(s) | 909, 1271, 1461, 2207 |
| EciI | GGCGGA | 8 cut(s) | 80, 376, 488, 964, 1444, 1754, 1802, 2069 |
| EclXI | CGGCCG | 1 cut(s) | 1379 |
| Eco130I | CCWWGG | 6 cut(s) | 158, 171, 502, 694, 1219, 1911 |
| Eco147I | AGGCCT | 1 cut(s) | 1399 |
| Eco24I | GRGCYC | 3 cut(s) | 1317, 1498, 2098 |
| Eco31I | GGTCTC | 1 cut(s) | 1478 |
| Eco32I | GATATC | 1 cut(s) | 1930 |
| Eco47I | GGWCC | 7 cut(s) | 641, 786, 828, 1078, 1353, 1523, 2011 |
| Eco47III | AGCGCT | 2 cut(s) | 606, 738 |
| Eco52I | CGGCCG | 1 cut(s) | 1379 |
| Eco57I | CTGAAG | 5 cut(s) | 675, 761, 1412, 1604, 2025 |
| Eco72I | CACGTG | 1 cut(s) | 1019 |
| Eco88I | CYCGRG | 2 cut(s) | 2159, 2248 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1781, 1892, 1937 |
| EcoO109I | RGGNCCY | 4 cut(s) | 786, 1494, 2094, 2095 |
| EcoRII | CCWGG | 7 cut(s) | 1101, 1399, 1572, 1686, 1716, 1952, 2333 |
| EcoRV | GATATC | 1 cut(s) | 1930 |
| EcoT14I | CCWWGG | 6 cut(s) | 158, 171, 502, 694, 1219, 1911 |
| EcoT38I | GRGCYC | 3 cut(s) | 1317, 1498, 2098 |
| ErhI | CCWWGG | 6 cut(s) | 158, 171, 502, 694, 1219, 1911 |
| Esp3I | CGTCTC | 1 cut(s) | 1100 |
| FaeI | CATG | 8 cut(s) | 107, 175, 589, 772, 1606, 1862, 1885, 2221 |
| FaqI | GGGAC | 9 cut(s) | 654, 776, 799, 1366, 1853, 1870, 2024, 2137, 2186 |
| FatI | CATG | 8 cut(s) | 103, 171, 585, 768, 1602, 1858, 1881, 2217 |
| FblI | GTMKAC | 2 cut(s) | 1002, 1283 |
| FokI | GGATG | 4 cut(s) | 376, 409, 1384, 1487 |
| FriOI | GRGCYC | 3 cut(s) | 1317, 1498, 2098 |
| FspBI | CTAG | 6 cut(s) | 131, 201, 248, 252, 602, 2099 |
| GlaI | GCGC | 9 cut(s) | 61, 606, 692, 738, 893, 1296, 1515, 2017, 2131 |
| GsaI | CCCAGC | 5 cut(s) | 1254, 1371, 2094, 2158, 2293 |
| GsuI | CTGGAG | 4 cut(s) | 1124, 1184, 1892, 1913 |
| HaeII | RGCGCY | 4 cut(s) | 608, 694, 740, 2133 |
| HgaI | GACGC | 8 cut(s) | 80, 176, 913, 1067, 1201, 1427, 1662, 2139 |
| HhaI | GCGC | 9 cut(s) | 62, 607, 693, 739, 894, 1297, 1516, 2018, 2132 |
| Hin1I | GRCGYC | 3 cut(s) | 1059, 1673, 2150 |
| Hin1II | CATG | 8 cut(s) | 107, 175, 589, 772, 1606, 1862, 1885, 2221 |
| Hin6I | GCGC | 9 cut(s) | 60, 605, 691, 737, 892, 1295, 1514, 2016, 2130 |
| HinP1I | GCGC | 9 cut(s) | 60, 605, 691, 737, 892, 1295, 1514, 2016, 2130 |
| HincII | GTYRAC | 3 cut(s) | 346, 1003, 1445 |
| HindII | GTYRAC | 3 cut(s) | 346, 1003, 1445 |
| HphI | GGTGA | 7 cut(s) | 724, 973, 1159, 1201, 1978, 1994, 2294 |
| Hpy166II | GTNNAC | 6 cut(s) | 346, 442, 484, 1003, 1284, 1445 |
| Hpy188I | TCNGA | 8 cut(s) | 46, 331, 435, 759, 865, 938, 1180, 1338 |
| Hpy188III | TCNNGA | 6 cut(s) | 191, 751, 1154, 1603, 1724, 2271 |
| Hpy8I | GTNNAC | 6 cut(s) | 346, 442, 484, 1003, 1284, 1445 |
| Hpy99I | CGWCG | 7 cut(s) | 377, 439, 850, 1061, 1244, 1329, 1443 |
| HpyCH4III | ACNGT | 9 cut(s) | 260, 335, 439, 481, 627, 649, 1082, 1144, 2049 |
| HpyCH4IV | ACGT | 7 cut(s) | 9, 48, 848, 1018, 1479, 1842, 2106 |
| HpyF3I | CTNAG | 8 cut(s) | 192, 758, 1134, 1335, 1677, 1703, 1997, 2175 |
| HpySE526I | ACGT | 7 cut(s) | 9, 48, 848, 1018, 1479, 1842, 2106 |
| Hsp92I | GRCGYC | 3 cut(s) | 1059, 1673, 2150 |
| Hsp92II | CATG | 8 cut(s) | 107, 175, 589, 772, 1606, 1862, 1885, 2221 |
| HspAI | GCGC | 9 cut(s) | 60, 605, 691, 737, 892, 1295, 1514, 2016, 2130 |
| Kpn2I | TCCGGA | 1 cut(s) | 1153 |
| KpnI | GGTACC | 1 cut(s) | 339 |
| KroI | GCCGGC | 2 cut(s) | 1381, 2206 |
| KroNI | GCCGGC | 2 cut(s) | 1383, 2208 |
| KspI | CCGCGG | 1 cut(s) | 1566 |
| Kzo9I | GATC | 3 cut(s) | 747, 1713, 1923 |
| LguI | GCTCTTC | 1 cut(s) | 2207 |
| LmnI | GCTCC | 6 cut(s) | 734, 841, 1312, 1375, 1540, 1873 |
| LweI | GCATC | 6 cut(s) | 447, 461, 1216, 1786, 1795, 2103 |
| MaeI | CTAG | 6 cut(s) | 131, 201, 248, 252, 602, 2099 |
| MaeII | ACGT | 7 cut(s) | 9, 48, 848, 1018, 1479, 1842, 2106 |
| MaeIII | GTNAC | 7 cut(s) | 236, 254, 508, 1040, 1189, 1635, 2282 |
| MalI | GATC | 3 cut(s) | 749, 1715, 1925 |
| MbiI | CCGCTC | 6 cut(s) | 244, 884, 1349, 1378, 1528, 1696 |
| MboI | GATC | 3 cut(s) | 747, 1713, 1923 |
| MboII | GAAGA | 9 cut(s) | 422, 923, 926, 1288, 1478, 1519, 1981, 2206, 2224 |
| MfeI | CAATTG | 1 cut(s) | 386 |
| MflI | RGATCY | 1 cut(s) | 1713 |
| MhlI | GDGCHC | 6 cut(s) | 486, 528, 1317, 1498, 2098, 2245 |
| MlsI | TGGCCA | 2 cut(s) | 800, 1829 |
| MluCI | AATT | 6 cut(s) | 386, 537, 573, 715, 1096, 1754 |
| MluI | ACGCGT | 1 cut(s) | 905 |
| MluNI | TGGCCA | 2 cut(s) | 800, 1829 |
| MlyI | GAGTC | 9 cut(s) | 77, 320, 730, 758, 1400, 1445, 1952, 2279, 2290 |
| MmeI | TCCRAC | 4 cut(s) | 458, 843, 855, 2292 |
| Mox20I | TGGCCA | 2 cut(s) | 800, 1829 |
| MreI | CGCCGGCG | 1 cut(s) | 2206 |
| MroI | TCCGGA | 1 cut(s) | 1153 |
| MroNI | GCCGGC | 2 cut(s) | 1381, 2206 |
| MscI | TGGCCA | 2 cut(s) | 800, 1829 |
| MseI | TTAA | 2 cut(s) | 596, 858 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1421 |
| Msp20I | TGGCCA | 2 cut(s) | 800, 1829 |
| MspA1I | CMGCKG | 6 cut(s) | 1367, 1541, 1565, 1837, 2030, 2293 |
| MunI | CAATTG | 1 cut(s) | 386 |
| Mva1269I | GAATGC | 3 cut(s) | 1629, 2039, 2071 |
| MvaI | CCWGG | 7 cut(s) | 1103, 1401, 1574, 1688, 1718, 1954, 2335 |
| NaeI | GCCGGC | 2 cut(s) | 1383, 2208 |
| NciI | CCSGG | 4 cut(s) | 40, 411, 1038, 1123 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeII | GATC | 3 cut(s) | 747, 1713, 1923 |
| NgoMIV | GCCGGC | 2 cut(s) | 1381, 2206 |
| NheI | GCTAGC | 2 cut(s) | 247, 601 |
| NlaIII | CATG | 8 cut(s) | 107, 175, 589, 772, 1606, 1862, 1885, 2221 |
| NmeAIII | GCCGAG | 1 cut(s) | 1605 |
| NmuCI | GTSAC | 5 cut(s) | 236, 508, 1189, 1635, 2282 |
| NspI | RCATGY | 2 cut(s) | 589, 1885 |
| OliI | CACNNNNGTG | 1 cut(s) | 1421 |
| PagI | TCATGA | 1 cut(s) | 1602 |
| PaqCI | CACCTGC | 2 cut(s) | 344, 700 |
| PceI | AGGCCT | 1 cut(s) | 1399 |
| PciI | ACATGT | 1 cut(s) | 585 |
| PciSI | GCTCTTC | 1 cut(s) | 2207 |
| PcsI | WCGNNNNNNNCGW | 8 cut(s) | 92, 184, 831, 928, 1015, 1236, 1455, 1586 |
| PctI | GAATGC | 3 cut(s) | 1629, 2039, 2071 |
| PdiI | GCCGGC | 2 cut(s) | 1383, 2208 |
| PfeI | GAWTC | 5 cut(s) | 35, 754, 952, 1150, 1577 |
| Pfl23II | CGTACG | 1 cut(s) | 1590 |
| PflFI | GACNNNGTC | 2 cut(s) | 1521, 1859 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 588 |
| PfoI | TCCNGGA | 1 cut(s) | 1101 |
| PinAI | ACCGGT | 2 cut(s) | 402, 983 |
| PleI | GAGTC | 9 cut(s) | 77, 319, 729, 758, 1399, 1445, 1951, 2279, 2290 |
| PmaCI | CACGTG | 1 cut(s) | 1019 |
| PmlI | CACGTG | 1 cut(s) | 1019 |
| PpsI | GAGTC | 9 cut(s) | 77, 319, 729, 758, 1399, 1445, 1951, 2279, 2290 |
| Ppu21I | YACGTR | 1 cut(s) | 1019 |
| PpuMI | RGGWCCY | 1 cut(s) | 786 |
| PscI | ACATGT | 1 cut(s) | 585 |
| Psp5II | RGGWCCY | 1 cut(s) | 786 |
| Psp6I | CCWGG | 7 cut(s) | 1101, 1399, 1572, 1686, 1716, 1952, 2333 |
| PspCI | CACGTG | 1 cut(s) | 1019 |
| PspFI | CCCAGC | 5 cut(s) | 1250, 1367, 2090, 2154, 2289 |
| PspGI | CCWGG | 7 cut(s) | 1101, 1399, 1572, 1686, 1716, 1952, 2333 |
| PspLI | CGTACG | 1 cut(s) | 1590 |
| PspOMI | GGGCCC | 2 cut(s) | 1494, 2094 |
| PspPPI | RGGWCCY | 1 cut(s) | 786 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1583, 1615 |
| PstI | CTGCAG | 4 cut(s) | 704, 808, 1804, 1938 |
| PstNI | CAGNNNCTG | 2 cut(s) | 942, 1687 |
| PsuI | RGATCY | 1 cut(s) | 1713 |
| PsyI | GACNNNGTC | 2 cut(s) | 1521, 1859 |
| RsaI | GTAC | 3 cut(s) | 337, 401, 1592 |
| RsaNI | GTAC | 3 cut(s) | 336, 400, 1591 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1421 |
| SacII | CCGCGG | 1 cut(s) | 1566 |
| SalI | GTCGAC | 1 cut(s) | 1001 |
| SapI | GCTCTTC | 1 cut(s) | 2207 |
| SaqAI | TTAA | 2 cut(s) | 596, 858 |
| Sau3AI | GATC | 3 cut(s) | 747, 1713, 1923 |
| SchI | GAGTC | 9 cut(s) | 77, 320, 730, 758, 1400, 1445, 1952, 2279, 2290 |
| SduI | GDGCHC | 6 cut(s) | 486, 528, 1317, 1498, 2098, 2245 |
| SfaNI | GCATC | 6 cut(s) | 447, 461, 1216, 1786, 1795, 2103 |
| SfcI | CTRYAG | 4 cut(s) | 700, 804, 1800, 1934 |
| Sfr303I | CCGCGG | 1 cut(s) | 1566 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2206 |
| SgrBI | CCGCGG | 1 cut(s) | 1566 |
| SinI | GGWCC | 7 cut(s) | 641, 786, 828, 1078, 1353, 1523, 2011 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1421 |
| SmlI | CTYRAG | 3 cut(s) | 1529, 1724, 2348 |
| SmoI | CTYRAG | 3 cut(s) | 1529, 1724, 2348 |
| Sse9I | AATT | 6 cut(s) | 386, 537, 573, 715, 1096, 1754 |
| SseBI | AGGCCT | 1 cut(s) | 1399 |
| SspI | AATATT | 2 cut(s) | 75, 1663 |
| SspMI | CTAG | 6 cut(s) | 131, 201, 248, 252, 602, 2099 |
| StuI | AGGCCT | 1 cut(s) | 1399 |
| StyI | CCWWGG | 6 cut(s) | 158, 171, 502, 694, 1219, 1911 |
| TaaI | ACNGT | 9 cut(s) | 260, 335, 439, 481, 627, 649, 1082, 1144, 2049 |
| TaiI | ACGT | 7 cut(s) | 12, 51, 851, 1021, 1482, 1845, 2109 |
| TaqI | TCGA | 8 cut(s) | 23, 455, 750, 880, 1002, 1394, 1926, 2272 |
| TaqII | GACCGA | 1 cut(s) | 1623 |
| TasI | AATT | 6 cut(s) | 386, 537, 573, 715, 1096, 1754 |
| TfiI | GAWTC | 5 cut(s) | 35, 754, 952, 1150, 1577 |
| Tru1I | TTAA | 2 cut(s) | 596, 858 |
| Tru9I | TTAA | 2 cut(s) | 596, 858 |
| TscAI | CASTG | 6 cut(s) | 34, 265, 274, 525, 808, 1366 |
| TseFI | GTSAC | 5 cut(s) | 236, 508, 1189, 1635, 2282 |
| Tsp45I | GTSAC | 5 cut(s) | 236, 508, 1189, 1635, 2282 |
| TspDTI | ATGAA | 2 cut(s) | 1591, 2087 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| TspRI | CASTG | 6 cut(s) | 34, 265, 274, 525, 808, 1366 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1521, 1859 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 588 |
| VneI | GTGCAC | 1 cut(s) | 482 |
| VpaK11BI | GGWCC | 7 cut(s) | 641, 786, 828, 1078, 1353, 1523, 2011 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1781, 1892, 1937 |
| XapI | RAATTY | 3 cut(s) | 537, 573, 715 |
| XceI | RCATGY | 2 cut(s) | 589, 1885 |
| XmiI | GTMKAC | 2 cut(s) | 1002, 1283 |
| XspI | CTAG | 6 cut(s) | 131, 201, 248, 252, 602, 2099 |