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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1115 |
| Acc65I | GGTACC | 1 cut(s) | 1112 |
| AccB1I | GGYRCC | 5 cut(s) | 148, 187, 879, 989, 1112 |
| AccBSI | CCGCTC | 4 cut(s) | 550, 703, 856, 1139 |
| AccII | CGCG | 3 cut(s) | 666, 698, 959 |
| AclWI | GGATC | 2 cut(s) | 84, 759 |
| AcoI | YGGCCR | 3 cut(s) | 321, 886, 1089 |
| AcuI | CTGAAG | 3 cut(s) | 158, 767, 1005 |
| AcyI | GRCGYC | 1 cut(s) | 188 |
| AfaI | GTAC | 2 cut(s) | 273, 1114 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 233, 379, 637, 748, 1143 |
| AgsI | TTSAA | 2 cut(s) | 379, 461 |
| AjiI | CACGTC | 1 cut(s) | 310 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 889, 921 |
| AluBI | AGCT | 7 cut(s) | 101, 136, 477, 556, 589, 673, 724 |
| AluI | AGCT | 7 cut(s) | 101, 136, 477, 556, 589, 673, 724 |
| Alw21I | GWGCWC | 2 cut(s) | 447, 492 |
| Alw26I | GTCTC | 6 cut(s) | 77, 283, 581, 590, 721, 1075 |
| AlwI | GGATC | 2 cut(s) | 84, 759 |
| AoxI | GGCC | 7 cut(s) | 50, 57, 321, 369, 398, 886, 1089 |
| ApeKI | GCWGC | 6 cut(s) | 133, 392, 524, 535, 553, 841 |
| Asp718I | GGTACC | 1 cut(s) | 1112 |
| AspLEI | GCGC | 4 cut(s) | 127, 190, 691, 1079 |
| AspS9I | GGNCC | 6 cut(s) | 4, 50, 58, 370, 398, 1044 |
| AsuHPI | GGTGA | 2 cut(s) | 832, 1019 |
| AvaII | GGWCC | 2 cut(s) | 4, 1044 |
| AxyI | CCTNAGG | 1 cut(s) | 158 |
| BaeGI | GKGCMC | 1 cut(s) | 994 |
| BalI | TGGCCA | 2 cut(s) | 888, 1091 |
| BanI | GGYRCC | 5 cut(s) | 148, 187, 879, 989, 1112 |
| BauI | CACGAG | 1 cut(s) | 1140 |
| Bbv12I | GWGCWC | 2 cut(s) | 447, 492 |
| BbvCI | CCTCAGC | 2 cut(s) | 816, 978 |
| BbvI | GCAGC | 6 cut(s) | 145, 379, 536, 547, 565, 828 |
| BccI | CCATC | 2 cut(s) | 226, 566 |
| BcoDI | GTCTC | 6 cut(s) | 77, 283, 581, 590, 721, 1075 |
| BfaI | CTAG | 4 cut(s) | 431, 542, 725, 1153 |
| BfmI | CTRYAG | 1 cut(s) | 472 |
| BfoI | RGCGCY | 1 cut(s) | 191 |
| BglII | AGATCT | 1 cut(s) | 783 |
| BlpI | GCTNAGC | 1 cut(s) | 478 |
| Bme18I | GGWCC | 2 cut(s) | 4, 1044 |
| BmgBI | CACGTC | 1 cut(s) | 310 |
| BmgT120I | GGNCC | 6 cut(s) | 4, 50, 58, 370, 398, 1044 |
| BmsI | GCATC | 4 cut(s) | 307, 607, 640, 926 |
| BpmI | CTGGAG | 4 cut(s) | 50, 117, 242, 563 |
| Bpu10I | CCTNAGC | 4 cut(s) | 557, 816, 978, 997 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 478 |
| BsaHI | GRCGYC | 1 cut(s) | 188 |
| BsaI | GGTCTC | 3 cut(s) | 581, 590, 1075 |
| BsaJI | CCNNGG | 6 cut(s) | 195, 600, 636, 664, 883, 1065 |
| BsaWI | WCCGGW | 1 cut(s) | 254 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 701, 731, 1036, 1066 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 233, 379, 637, 748, 1143 |
| Bse118I | RCCGGY | 1 cut(s) | 52 |
| Bse1I | ACTGG | 1 cut(s) | 203 |
| Bse21I | CCTNAGG | 1 cut(s) | 158 |
| Bse3DI | GCAATG | 2 cut(s) | 118, 128 |
| BseDI | CCNNGG | 6 cut(s) | 195, 600, 636, 664, 883, 1065 |
| BseGI | GGATG | 5 cut(s) | 319, 622, 840, 917, 970 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 233, 379, 637, 748, 1143 |
| BseMI | GCAATG | 2 cut(s) | 118, 128 |
| BseMII | CTCAG | 5 cut(s) | 492, 571, 807, 969, 1052 |
| BseNI | ACTGG | 1 cut(s) | 203 |
| BseRI | GAGGAG | 2 cut(s) | 578, 1041 |
| BseSI | GKGCMC | 1 cut(s) | 994 |
| BseX3I | CGGCCG | 1 cut(s) | 321 |
| BseXI | GCAGC | 6 cut(s) | 145, 379, 536, 547, 565, 828 |
| BseYI | CCCAGC | 4 cut(s) | 395, 829, 921, 929 |
| Bsh1236I | CGCG | 3 cut(s) | 666, 698, 959 |
| Bsh1285I | CGRYCG | 2 cut(s) | 306, 324 |
| BshFI | GGCC | 7 cut(s) | 52, 59, 323, 371, 400, 888, 1091 |
| BshNI | GGYRCC | 5 cut(s) | 148, 187, 879, 989, 1112 |
| BsiEI | CGRYCG | 2 cut(s) | 306, 324 |
| BsiHKAI | GWGCWC | 2 cut(s) | 447, 492 |
| BsiSI | CCGG | 4 cut(s) | 53, 255, 401, 1025 |
| BslFI | GGGAC | 1 cut(s) | 101 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 233, 379, 637, 748, 1143 |
| BsmAI | GTCTC | 6 cut(s) | 77, 283, 581, 590, 721, 1075 |
| BsmFI | GGGAC | 1 cut(s) | 101 |
| BsmI | GAATGC | 1 cut(s) | 952 |
| BsnI | GGCC | 7 cut(s) | 52, 59, 323, 371, 400, 888, 1091 |
| Bso31I | GGTCTC | 3 cut(s) | 581, 590, 1075 |
| Bsp1286I | GDGCHC | 3 cut(s) | 447, 492, 994 |
| Bsp143I | GATC | 5 cut(s) | 15, 76, 303, 751, 783 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 478 |
| Bsp19I | CCATGG | 1 cut(s) | 883 |
| BspANI | GGCC | 7 cut(s) | 52, 59, 323, 371, 400, 888, 1091 |
| BspCNI | CTCAG | 6 cut(s) | 4, 491, 570, 808, 970, 1051 |
| BspFNI | CGCG | 3 cut(s) | 666, 698, 959 |
| BspPI | GGATC | 2 cut(s) | 84, 759 |
| BspT107I | GGYRCC | 5 cut(s) | 148, 187, 879, 989, 1112 |
| BspTNI | GGTCTC | 3 cut(s) | 581, 590, 1075 |
| BsrBI | CCGCTC | 4 cut(s) | 550, 703, 856, 1139 |
| BsrDI | GCAATG | 2 cut(s) | 118, 128 |
| BsrFI | RCCGGY | 1 cut(s) | 52 |
| BsrI | ACTGG | 1 cut(s) | 203 |
| BssAI | RCCGGY | 1 cut(s) | 52 |
| BssECI | CCNNGG | 6 cut(s) | 195, 600, 636, 664, 883, 1065 |
| BssMI | GATC | 5 cut(s) | 15, 76, 303, 751, 783 |
| BssNI | GRCGYC | 1 cut(s) | 188 |
| BssSI | CACGAG | 1 cut(s) | 1140 |
| BssT1I | CCWWGG | 4 cut(s) | 195, 600, 636, 883 |
| Bst2BI | CACGAG | 1 cut(s) | 1140 |
| Bst4CI | ACNGT | 6 cut(s) | 8, 70, 267, 1062, 1112, 1117 |
| Bst6I | CTCTTC | 1 cut(s) | 818 |
| BstACI | GRCGYC | 1 cut(s) | 188 |
| BstDEI | CTNAG | 9 cut(s) | 12, 158, 478, 557, 807, 816, 978, 997, 1038 |
| BstDSI | CCRYGG | 2 cut(s) | 664, 883 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 635, 746 |
| BstF5I | GGATG | 5 cut(s) | 319, 622, 840, 917, 970 |
| BstFNI | CGCG | 3 cut(s) | 666, 698, 959 |
| BstH2I | RGCGCY | 1 cut(s) | 191 |
| BstHHI | GCGC | 4 cut(s) | 127, 190, 691, 1079 |
| BstKTI | GATC | 5 cut(s) | 18, 79, 306, 754, 786 |
| BstMAI | GTCTC | 6 cut(s) | 77, 283, 581, 590, 721, 1075 |
| BstMBI | GATC | 5 cut(s) | 15, 76, 303, 751, 783 |
| BstMCI | CGRYCG | 2 cut(s) | 306, 324 |
| BstSFI | CTRYAG | 1 cut(s) | 472 |
| BstSLI | GKGCMC | 1 cut(s) | 994 |
| BstUI | CGCG | 3 cut(s) | 666, 698, 959 |
| BstV1I | GCAGC | 6 cut(s) | 145, 379, 536, 547, 565, 828 |
| BstX2I | RGATCY | 1 cut(s) | 783 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 929 |
| BstYI | RGATCY | 1 cut(s) | 783 |
| BstZI | CGGCCG | 1 cut(s) | 321 |
| Bsu36I | CCTNAGG | 1 cut(s) | 158 |
| BsuRI | GGCC | 7 cut(s) | 52, 59, 323, 371, 400, 888, 1091 |
| BtgI | CCRYGG | 2 cut(s) | 664, 883 |
| BtrI | CACGTC | 1 cut(s) | 310 |
| BtsCI | GGATG | 5 cut(s) | 319, 622, 840, 917, 970 |
| BtsIMutI | CAGTG | 1 cut(s) | 210 |
| CfoI | GCGC | 4 cut(s) | 127, 190, 691, 1079 |
| Cfr10I | RCCGGY | 1 cut(s) | 52 |
| Cfr13I | GGNCC | 6 cut(s) | 4, 50, 58, 370, 398, 1044 |
| Cfr42I | CCGCGG | 1 cut(s) | 667 |
| CseI | GACGC | 3 cut(s) | 704, 856, 1010 |
| Csp6I | GTAC | 2 cut(s) | 272, 1113 |
| CviAII | CATG | 3 cut(s) | 509, 713, 884 |
| CviQI | GTAC | 2 cut(s) | 272, 1113 |
| DdeI | CTNAG | 9 cut(s) | 12, 158, 478, 557, 807, 816, 978, 997, 1038 |
| DinI | GGCGCC | 1 cut(s) | 189 |
| DpnI | GATC | 5 cut(s) | 17, 78, 305, 753, 785 |
| DpnII | GATC | 5 cut(s) | 15, 76, 303, 751, 783 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1115 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1115 |
| EaeI | YGGCCR | 3 cut(s) | 321, 886, 1089 |
| EagI | CGGCCG | 1 cut(s) | 321 |
| Eam1104I | CTCTTC | 1 cut(s) | 818 |
| EarI | CTCTTC | 1 cut(s) | 818 |
| EciI | GGCGGA | 1 cut(s) | 1043 |
| EclXI | CGGCCG | 1 cut(s) | 321 |
| Eco130I | CCWWGG | 4 cut(s) | 195, 600, 636, 883 |
| Eco31I | GGTCTC | 3 cut(s) | 581, 590, 1075 |
| Eco47I | GGWCC | 2 cut(s) | 4, 1044 |
| Eco52I | CGGCCG | 1 cut(s) | 321 |
| Eco57I | CTGAAG | 3 cut(s) | 158, 767, 1005 |
| Eco81I | CCTNAGG | 1 cut(s) | 158 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 635, 746 |
| EcoO109I | RGGNCCY | 1 cut(s) | 370 |
| EcoT14I | CCWWGG | 4 cut(s) | 195, 600, 636, 883 |
| EgeI | GGCGCC | 1 cut(s) | 189 |
| EheI | GGCGCC | 1 cut(s) | 189 |
| ErhI | CCWWGG | 4 cut(s) | 195, 600, 636, 883 |
| FaeI | CATG | 3 cut(s) | 512, 716, 887 |
| FaqI | GGGAC | 1 cut(s) | 101 |
| FatI | CATG | 3 cut(s) | 508, 712, 883 |
| FauI | CCCGC | 5 cut(s) | 786, 869, 964, 982, 1001 |
| FokI | GGATG | 5 cut(s) | 326, 629, 847, 904, 977 |
| FspBI | CTAG | 4 cut(s) | 431, 542, 725, 1153 |
| GlaI | GCGC | 4 cut(s) | 126, 189, 690, 1078 |
| GsaI | CCCAGC | 4 cut(s) | 399, 833, 925, 933 |
| GsuI | CTGGAG | 4 cut(s) | 50, 117, 242, 563 |
| HaeII | RGCGCY | 1 cut(s) | 191 |
| HaeIII | GGCC | 7 cut(s) | 52, 59, 323, 371, 400, 888, 1091 |
| HapII | CCGG | 4 cut(s) | 53, 255, 401, 1025 |
| HgaI | GACGC | 3 cut(s) | 704, 856, 1010 |
| HhaI | GCGC | 4 cut(s) | 127, 190, 691, 1079 |
| Hin1I | GRCGYC | 1 cut(s) | 188 |
| Hin1II | CATG | 3 cut(s) | 512, 716, 887 |
| Hin6I | GCGC | 4 cut(s) | 125, 188, 689, 1077 |
| HinP1I | GCGC | 4 cut(s) | 125, 188, 689, 1077 |
| HinfI | GANTC | 4 cut(s) | 425, 438, 1034, 1129 |
| HpaII | CCGG | 4 cut(s) | 53, 255, 401, 1025 |
| HphI | GGTGA | 2 cut(s) | 832, 1019 |
| Hpy188I | TCNGA | 3 cut(s) | 945, 1066, 1150 |
| Hpy188III | TCNNGA | 3 cut(s) | 29, 80, 580 |
| Hpy99I | CGWCG | 3 cut(s) | 311, 872, 940 |
| HpyAV | CCTTC | 9 cut(s) | 133, 169, 352, 373, 493, 742, 853, 866, 980 |
| HpyCH4III | ACNGT | 6 cut(s) | 8, 70, 267, 1062, 1112, 1117 |
| HpyCH4IV | ACGT | 1 cut(s) | 309 |
| HpyCH4V | TGCA | 5 cut(s) | 36, 133, 409, 620, 950 |
| HpyF3I | CTNAG | 9 cut(s) | 12, 158, 478, 557, 807, 816, 978, 997, 1038 |
| HpySE526I | ACGT | 1 cut(s) | 309 |
| Hsp92I | GRCGYC | 1 cut(s) | 188 |
| Hsp92II | CATG | 3 cut(s) | 512, 716, 887 |
| HspAI | GCGC | 4 cut(s) | 125, 188, 689, 1077 |
| KasI | GGCGCC | 1 cut(s) | 187 |
| KpnI | GGTACC | 1 cut(s) | 1116 |
| KroI | GCCGGC | 1 cut(s) | 52 |
| KroNI | GCCGGC | 1 cut(s) | 54 |
| KspI | CCGCGG | 1 cut(s) | 667 |
| Kzo9I | GATC | 5 cut(s) | 15, 76, 303, 751, 783 |
| LmnI | GCTCC | 7 cut(s) | 98, 199, 223, 547, 586, 700, 853 |
| Lsp1109I | GCAGC | 6 cut(s) | 145, 379, 536, 547, 565, 828 |
| LweI | GCATC | 4 cut(s) | 307, 607, 640, 926 |
| MaeI | CTAG | 4 cut(s) | 431, 542, 725, 1153 |
| MaeII | ACGT | 1 cut(s) | 309 |
| MaeIII | GTNAC | 3 cut(s) | 205, 259, 416 |
| MalI | GATC | 5 cut(s) | 17, 78, 305, 753, 785 |
| MbiI | CCGCTC | 4 cut(s) | 550, 703, 856, 1139 |
| MboI | GATC | 5 cut(s) | 15, 76, 303, 751, 783 |
| MboII | GAAGA | 4 cut(s) | 341, 367, 835, 1043 |
| MfeI | CAATTG | 1 cut(s) | 384 |
| MflI | RGATCY | 1 cut(s) | 783 |
| MhlI | GDGCHC | 3 cut(s) | 447, 492, 994 |
| MlsI | TGGCCA | 2 cut(s) | 888, 1091 |
| MluCI | AATT | 3 cut(s) | 22, 384, 464 |
| MluNI | TGGCCA | 2 cut(s) | 888, 1091 |
| Mly113I | GGCGCC | 1 cut(s) | 188 |
| MlyI | GAGTC | 2 cut(s) | 419, 1138 |
| Mox20I | TGGCCA | 2 cut(s) | 888, 1091 |
| MroNI | GCCGGC | 1 cut(s) | 52 |
| MscI | TGGCCA | 2 cut(s) | 888, 1091 |
| Msp20I | TGGCCA | 2 cut(s) | 888, 1091 |
| MspA1I | CMGCKG | 7 cut(s) | 136, 352, 656, 666, 793, 977, 1042 |
| MspI | CCGG | 4 cut(s) | 53, 255, 401, 1025 |
| MunI | CAATTG | 1 cut(s) | 384 |
| Mva1269I | GAATGC | 1 cut(s) | 952 |
| MvnI | CGCG | 3 cut(s) | 666, 698, 959 |
| NaeI | GCCGGC | 1 cut(s) | 54 |
| NarI | GGCGCC | 1 cut(s) | 188 |
| NcoI | CCATGG | 1 cut(s) | 883 |
| NdeII | GATC | 5 cut(s) | 15, 76, 303, 751, 783 |
| NgoMIV | GCCGGC | 1 cut(s) | 52 |
| NlaIII | CATG | 3 cut(s) | 512, 716, 887 |
| NmuCI | GTSAC | 3 cut(s) | 205, 259, 416 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 303 |
| PctI | GAATGC | 1 cut(s) | 952 |
| PdiI | GCCGGC | 1 cut(s) | 54 |
| PfeI | GAWTC | 2 cut(s) | 438, 1034 |
| PflFI | GACNNNGTC | 1 cut(s) | 713 |
| Ple19I | CGATCG | 1 cut(s) | 306 |
| PleI | GAGTC | 2 cut(s) | 419, 1137 |
| PluTI | GGCGCC | 1 cut(s) | 191 |
| PpsI | GAGTC | 2 cut(s) | 419, 1137 |
| PspFI | CCCAGC | 4 cut(s) | 395, 829, 921, 929 |
| PspPI | GGNCC | 6 cut(s) | 4, 50, 58, 370, 398, 1044 |
| PsuI | RGATCY | 1 cut(s) | 783 |
| PsyI | GACNNNGTC | 1 cut(s) | 713 |
| PvuI | CGATCG | 1 cut(s) | 306 |
| PvuII | CAGCTG | 1 cut(s) | 136 |
| RsaI | GTAC | 2 cut(s) | 273, 1114 |
| RsaNI | GTAC | 2 cut(s) | 272, 1113 |
| SacII | CCGCGG | 1 cut(s) | 667 |
| Sau3AI | GATC | 5 cut(s) | 15, 76, 303, 751, 783 |
| Sau96I | GGNCC | 6 cut(s) | 4, 50, 58, 370, 398, 1044 |
| SchI | GAGTC | 2 cut(s) | 419, 1138 |
| SduI | GDGCHC | 3 cut(s) | 447, 492, 994 |
| SfaNI | GCATC | 4 cut(s) | 307, 607, 640, 926 |
| SfcI | CTRYAG | 1 cut(s) | 472 |
| SfoI | GGCGCC | 1 cut(s) | 189 |
| Sfr303I | CCGCGG | 1 cut(s) | 667 |
| SgrBI | CCGCGG | 1 cut(s) | 667 |
| SinI | GGWCC | 2 cut(s) | 4, 1044 |
| Sse9I | AATT | 3 cut(s) | 22, 384, 464 |
| SspDI | GGCGCC | 1 cut(s) | 187 |
| SspMI | CTAG | 4 cut(s) | 431, 542, 725, 1153 |
| StyI | CCWWGG | 4 cut(s) | 195, 600, 636, 883 |
| TaaI | ACNGT | 6 cut(s) | 8, 70, 267, 1062, 1112, 1117 |
| TaiI | ACGT | 1 cut(s) | 312 |
| TaqI | TCGA | 4 cut(s) | 306, 423, 486, 870 |
| TasI | AATT | 3 cut(s) | 22, 384, 464 |
| TauI | GCSGC | 9 cut(s) | 59, 95, 229, 323, 553, 656, 669, 764, 806 |
| TfiI | GAWTC | 2 cut(s) | 438, 1034 |
| TscAI | CASTG | 1 cut(s) | 210 |
| TseFI | GTSAC | 3 cut(s) | 205, 259, 416 |
| TseI | GCWGC | 6 cut(s) | 133, 392, 524, 535, 553, 841 |
| Tsp45I | GTSAC | 3 cut(s) | 205, 259, 416 |
| TspDTI | ATGAA | 1 cut(s) | 342 |
| TspGWI | ACGGA | 1 cut(s) | 608 |
| TspRI | CASTG | 1 cut(s) | 210 |
| Tth111I | GACNNNGTC | 1 cut(s) | 713 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 1044 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 635, 746 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 68, 607, 890 |
| XspI | CTAG | 4 cut(s) | 431, 542, 725, 1153 |