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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 491 |
| AccBSI | CCGCTC | 2 cut(s) | 328, 355 |
| AccII | CGCG | 2 cut(s) | 198, 477 |
| AclWI | GGATC | 2 cut(s) | 570, 589 |
| AcuI | CTGAAG | 2 cut(s) | 578, 584 |
| AcyI | GRCGYC | 1 cut(s) | 388 |
| AdeI | CACNNNGTG | 1 cut(s) | 88 |
| AfaI | GTAC | 1 cut(s) | 501 |
| AfeI | AGCGCT | 1 cut(s) | 129 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 328, 604 |
| AgsI | TTSAA | 2 cut(s) | 9, 258 |
| AleI | CACNNNNGTG | 1 cut(s) | 348 |
| AluBI | AGCT | 6 cut(s) | 395, 417, 450, 484, 514, 535 |
| AluI | AGCT | 6 cut(s) | 395, 417, 450, 484, 514, 535 |
| Alw26I | GTCTC | 6 cut(s) | 86, 132, 185, 239, 294, 442 |
| AlwI | GGATC | 2 cut(s) | 570, 589 |
| Ama87I | CYCGRG | 2 cut(s) | 323, 509 |
| Aor51HI | AGCGCT | 1 cut(s) | 129 |
| ApeKI | GCWGC | 2 cut(s) | 414, 464 |
| AspLEI | GCGC | 2 cut(s) | 130, 237 |
| AsuHPI | GGTGA | 1 cut(s) | 335 |
| AsuNHI | GCTAGC | 5 cut(s) | 70, 124, 169, 223, 395 |
| AvaI | CYCGRG | 2 cut(s) | 323, 509 |
| BanI | GGYRCC | 1 cut(s) | 491 |
| BbvI | GCAGC | 2 cut(s) | 426, 451 |
| BccI | CCATC | 1 cut(s) | 503 |
| BcoDI | GTCTC | 6 cut(s) | 86, 132, 185, 239, 294, 442 |
| BfaI | CTAG | 7 cut(s) | 71, 125, 170, 224, 279, 396, 503 |
| BfoI | RGCGCY | 1 cut(s) | 131 |
| BisI | GCNGC | 5 cut(s) | 356, 415, 465, 478, 573 |
| BlpI | GCTNAGC | 3 cut(s) | 31, 131, 238 |
| BlsI | GCNGC | 5 cut(s) | 357, 416, 466, 479, 574 |
| BmeT110I | CYCGRG | 2 cut(s) | 323, 509 |
| BmiI | GGNNCC | 1 cut(s) | 493 |
| BmsI | GCATC | 2 cut(s) | 451, 460 |
| BmtI | GCTAGC | 5 cut(s) | 74, 128, 173, 227, 399 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 384, 416 |
| BpmI | CTGGAG | 2 cut(s) | 424, 557 |
| Bpu10I | CCTNAGC | 1 cut(s) | 418 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 31, 131, 238 |
| BpuEI | CTTGAG | 2 cut(s) | 395, 611 |
| BsaHI | GRCGYC | 1 cut(s) | 388 |
| BsaI | GGTCTC | 1 cut(s) | 442 |
| BsaJI | CCNNGG | 3 cut(s) | 400, 475, 624 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 83, 113 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 328, 604 |
| Bse1I | ACTGG | 1 cut(s) | 573 |
| BseDI | CCNNGG | 3 cut(s) | 400, 475, 624 |
| BseGI | GGATG | 1 cut(s) | 634 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 328, 604 |
| BseMII | CTCAG | 1 cut(s) | 398 |
| BseNI | ACTGG | 1 cut(s) | 573 |
| BseRI | GAGGAG | 3 cut(s) | 297, 439, 613 |
| BseXI | GCAGC | 2 cut(s) | 426, 451 |
| BseYI | CCCAGC | 3 cut(s) | 358, 450, 531 |
| Bsh1236I | CGCG | 2 cut(s) | 198, 477 |
| BshNI | GGYRCC | 1 cut(s) | 491 |
| BsiHKCI | CYCGRG | 2 cut(s) | 323, 509 |
| BslFI | GGGAC | 1 cut(s) | 514 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 328, 604 |
| BsmAI | GTCTC | 6 cut(s) | 86, 132, 185, 239, 294, 442 |
| BsmFI | GGGAC | 1 cut(s) | 514 |
| Bso31I | GGTCTC | 1 cut(s) | 442 |
| BsoBI | CYCGRG | 2 cut(s) | 323, 509 |
| Bsp143I | GATC | 4 cut(s) | 520, 562, 579, 594 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 31, 131, 238 |
| BspCNI | CTCAG | 1 cut(s) | 399 |
| BspFNI | CGCG | 2 cut(s) | 198, 477 |
| BspLI | GGNNCC | 1 cut(s) | 493 |
| BspOI | GCTAGC | 5 cut(s) | 74, 128, 173, 227, 399 |
| BspPI | GGATC | 2 cut(s) | 570, 589 |
| BspT107I | GGYRCC | 1 cut(s) | 491 |
| BspTNI | GGTCTC | 1 cut(s) | 442 |
| BsrBI | CCGCTC | 2 cut(s) | 328, 355 |
| BsrI | ACTGG | 1 cut(s) | 573 |
| BssECI | CCNNGG | 3 cut(s) | 400, 475, 624 |
| BssMI | GATC | 4 cut(s) | 520, 562, 579, 594 |
| BssNI | GRCGYC | 1 cut(s) | 388 |
| BstACI | GRCGYC | 1 cut(s) | 388 |
| BstDEI | CTNAG | 7 cut(s) | 31, 85, 131, 238, 293, 407, 418 |
| BstDSI | CCRYGG | 1 cut(s) | 475 |
| BstF5I | GGATG | 1 cut(s) | 634 |
| BstFNI | CGCG | 2 cut(s) | 198, 477 |
| BstH2I | RGCGCY | 1 cut(s) | 131 |
| BstHHI | GCGC | 2 cut(s) | 130, 237 |
| BstKTI | GATC | 4 cut(s) | 523, 565, 582, 597 |
| BstMAI | GTCTC | 6 cut(s) | 86, 132, 185, 239, 294, 442 |
| BstMBI | GATC | 4 cut(s) | 520, 562, 579, 594 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 456, 470 |
| BstUI | CGCG | 2 cut(s) | 198, 477 |
| BstV1I | GCAGC | 2 cut(s) | 426, 451 |
| BstX2I | RGATCY | 1 cut(s) | 594 |
| BstYI | RGATCY | 1 cut(s) | 594 |
| BtgI | CCRYGG | 1 cut(s) | 475 |
| BtgZI | GCGATG | 1 cut(s) | 474 |
| BtsCI | GGATG | 1 cut(s) | 634 |
| CfoI | GCGC | 2 cut(s) | 130, 237 |
| Cfr42I | CCGCGG | 1 cut(s) | 478 |
| CseI | GACGC | 1 cut(s) | 377 |
| Csp6I | GTAC | 1 cut(s) | 500 |
| CviAII | CATG | 1 cut(s) | 547 |
| CviJI | RGCY | 9 cut(s) | 358, 395, 399, 417, 450, 484, 514, 535, 551 |
| CviKI_1 | RGCY | 9 cut(s) | 358, 395, 399, 417, 450, 484, 514, 535, 551 |
| CviQI | GTAC | 1 cut(s) | 500 |
| DdeI | CTNAG | 7 cut(s) | 31, 85, 131, 238, 293, 407, 418 |
| DpnI | GATC | 4 cut(s) | 522, 564, 581, 596 |
| DpnII | GATC | 4 cut(s) | 520, 562, 579, 594 |
| DraIII | CACNNNGTG | 1 cut(s) | 88 |
| Eco31I | GGTCTC | 1 cut(s) | 442 |
| Eco47III | AGCGCT | 1 cut(s) | 129 |
| Eco57I | CTGAAG | 2 cut(s) | 578, 584 |
| Eco88I | CYCGRG | 2 cut(s) | 323, 509 |
| FaeI | CATG | 1 cut(s) | 550 |
| FaiI | YATR | 2 cut(s) | 17, 548 |
| FaqI | GGGAC | 1 cut(s) | 514 |
| FatI | CATG | 1 cut(s) | 546 |
| FauI | CCCGC | 3 cut(s) | 321, 482, 597 |
| Fnu4HI | GCNGC | 5 cut(s) | 356, 415, 465, 478, 573 |
| Fsp4HI | GCNGC | 5 cut(s) | 356, 415, 465, 478, 573 |
| FspBI | CTAG | 7 cut(s) | 71, 125, 170, 224, 279, 396, 503 |
| GlaI | GCGC | 2 cut(s) | 129, 236 |
| GluI | GCNGC | 5 cut(s) | 356, 415, 465, 478, 573 |
| GsaI | CCCAGC | 3 cut(s) | 362, 454, 535 |
| GsuI | CTGGAG | 2 cut(s) | 424, 557 |
| HaeII | RGCGCY | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 377 |
| HhaI | GCGC | 2 cut(s) | 130, 237 |
| Hin1I | GRCGYC | 1 cut(s) | 388 |
| Hin1II | CATG | 1 cut(s) | 550 |
| Hin6I | GCGC | 2 cut(s) | 128, 235 |
| HinP1I | GCGC | 2 cut(s) | 128, 235 |
| HinfI | GANTC | 7 cut(s) | 40, 94, 140, 193, 247, 302, 608 |
| HphI | GGTGA | 1 cut(s) | 335 |
| Hpy188I | TCNGA | 2 cut(s) | 404, 628 |
| Hpy188III | TCNNGA | 5 cut(s) | 258, 313, 374, 441, 583 |
| Hpy99I | CGWCG | 1 cut(s) | 393 |
| HpyAV | CCTTC | 2 cut(s) | 553, 608 |
| HpyCH4V | TGCA | 5 cut(s) | 49, 82, 103, 149, 202 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 456, 470 |
| HpyF3I | CTNAG | 7 cut(s) | 31, 85, 131, 238, 293, 407, 418 |
| Hsp92I | GRCGYC | 1 cut(s) | 388 |
| Hsp92II | CATG | 1 cut(s) | 550 |
| HspAI | GCGC | 2 cut(s) | 128, 235 |
| KspI | CCGCGG | 1 cut(s) | 478 |
| Kzo9I | GATC | 4 cut(s) | 520, 562, 579, 594 |
| LmnI | GCTCC | 2 cut(s) | 447, 538 |
| LpnPI | CCDG | 7 cut(s) | 326, 344, 436, 454, 521, 545, 554 |
| Lsp1109I | GCAGC | 2 cut(s) | 426, 451 |
| LweI | GCATC | 2 cut(s) | 451, 460 |
| MaeI | CTAG | 7 cut(s) | 71, 125, 170, 224, 279, 396, 503 |
| MaeIII | GTNAC | 1 cut(s) | 24 |
| MalI | GATC | 4 cut(s) | 522, 564, 581, 596 |
| MbiI | CCGCTC | 2 cut(s) | 328, 355 |
| MboI | GATC | 4 cut(s) | 520, 562, 579, 594 |
| MboII | GAAGA | 3 cut(s) | 65, 165, 218 |
| MflI | RGATCY | 1 cut(s) | 594 |
| MluCI | AATT | 1 cut(s) | 9 |
| MlyI | GAGTC | 6 cut(s) | 49, 88, 134, 187, 241, 296 |
| MnlI | CCTC | 8 cut(s) | 254, 275, 370, 410, 417, 437, 518, 634 |
| MslI | CAYNNNNRTG | 1 cut(s) | 348 |
| MspA1I | CMGCKG | 3 cut(s) | 477, 535, 604 |
| MvnI | CGCG | 2 cut(s) | 198, 477 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 456, 470 |
| NdeII | GATC | 4 cut(s) | 520, 562, 579, 594 |
| NheI | GCTAGC | 5 cut(s) | 70, 124, 169, 223, 395 |
| NlaIII | CATG | 1 cut(s) | 550 |
| NlaIV | GGNNCC | 1 cut(s) | 493 |
| OliI | CACNNNNGTG | 1 cut(s) | 348 |
| PaeR7I | CTCGAG | 1 cut(s) | 509 |
| PfeI | GAWTC | 1 cut(s) | 608 |
| PkrI | GCNGC | 5 cut(s) | 357, 416, 466, 479, 574 |
| PleI | GAGTC | 6 cut(s) | 48, 88, 134, 187, 241, 296 |
| PpsI | GAGTC | 6 cut(s) | 48, 88, 134, 187, 241, 296 |
| PspFI | CCCAGC | 3 cut(s) | 358, 450, 531 |
| PspN4I | GGNNCC | 1 cut(s) | 493 |
| PspXI | VCTCGAGB | 1 cut(s) | 509 |
| PsuI | RGATCY | 1 cut(s) | 594 |
| PvuII | CAGCTG | 1 cut(s) | 535 |
| RsaI | GTAC | 1 cut(s) | 501 |
| RsaNI | GTAC | 1 cut(s) | 500 |
| RseI | CAYNNNNRTG | 1 cut(s) | 348 |
| SacII | CCGCGG | 1 cut(s) | 478 |
| SatI | GCNGC | 5 cut(s) | 356, 415, 465, 478, 573 |
| Sau3AI | GATC | 4 cut(s) | 520, 562, 579, 594 |
| SchI | GAGTC | 6 cut(s) | 49, 88, 134, 187, 241, 296 |
| SetI | ASST | 8 cut(s) | 348, 397, 419, 452, 486, 510, 516, 537 |
| SfaNI | GCATC | 2 cut(s) | 451, 460 |
| Sfr274I | CTCGAG | 1 cut(s) | 509 |
| Sfr303I | CCGCGG | 1 cut(s) | 478 |
| SgrBI | CCGCGG | 1 cut(s) | 478 |
| SlaI | CTCGAG | 1 cut(s) | 509 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 348 |
| SmlI | CTYRAG | 3 cut(s) | 374, 509, 590 |
| SmoI | CTYRAG | 3 cut(s) | 374, 509, 590 |
| Sse9I | AATT | 1 cut(s) | 9 |
| SspMI | CTAG | 7 cut(s) | 71, 125, 170, 224, 279, 396, 503 |
| TaqI | TCGA | 2 cut(s) | 391, 510 |
| TasI | AATT | 1 cut(s) | 9 |
| TauI | GCSGC | 3 cut(s) | 358, 480, 575 |
| TfiI | GAWTC | 1 cut(s) | 608 |
| TseI | GCWGC | 2 cut(s) | 414, 464 |
| TspGWI | ACGGA | 1 cut(s) | 35 |
| XhoI | CTCGAG | 1 cut(s) | 509 |
| XspI | CTAG | 7 cut(s) | 71, 125, 170, 224, 279, 396, 503 |