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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 549, 651 |
| AccBSI | CCGCTC | 4 cut(s) | 233, 371, 383, 546 |
| AccII | CGCG | 1 cut(s) | 85 |
| AclWI | GGATC | 1 cut(s) | 439 |
| AcoI | YGGCCR | 1 cut(s) | 136 |
| AcuI | CTGAAG | 1 cut(s) | 453 |
| AcyI | GRCGYC | 2 cut(s) | 550, 726 |
| AfaI | GTAC | 2 cut(s) | 152, 617 |
| AfeI | AGCGCT | 1 cut(s) | 309 |
| AflIII | ACRYGT | 1 cut(s) | 415 |
| AgsI | TTSAA | 2 cut(s) | 462, 648 |
| AjiI | CACGTC | 1 cut(s) | 134 |
| AjnI | CCWGG | 4 cut(s) | 160, 250, 280, 635 |
| AleI | CACNNNNGTG | 1 cut(s) | 9 |
| Alw26I | GTCTC | 1 cut(s) | 771 |
| AlwI | GGATC | 1 cut(s) | 439 |
| Ama87I | CYCGRG | 3 cut(s) | 117, 659, 757 |
| Aor51HI | AGCGCT | 1 cut(s) | 309 |
| AoxI | GGCC | 5 cut(s) | 79, 136, 248, 277, 319 |
| ApaI | GGGCCC | 1 cut(s) | 83 |
| ApeKI | GCWGC | 3 cut(s) | 174, 305, 425 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 14, 46 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 466 |
| AspLEI | GCGC | 2 cut(s) | 310, 552 |
| AspS9I | GGNCC | 4 cut(s) | 79, 80, 278, 374 |
| AsuC2I | CCSGG | 4 cut(s) | 77, 687, 758, 759 |
| AsuHPI | GGTGA | 3 cut(s) | 213, 213, 528 |
| AvaI | CYCGRG | 3 cut(s) | 117, 659, 757 |
| AvaII | GGWCC | 1 cut(s) | 374 |
| BaeGI | GKGCMC | 1 cut(s) | 83 |
| BalI | TGGCCA | 1 cut(s) | 138 |
| BanI | GGYRCC | 2 cut(s) | 549, 651 |
| BanII | GRGCYC | 1 cut(s) | 83 |
| BauI | CACGAG | 2 cut(s) | 5, 343 |
| BbsI | GAAGAC | 1 cut(s) | 67 |
| BbvI | GCAGC | 3 cut(s) | 161, 317, 412 |
| BccI | CCATC | 3 cut(s) | 192, 561, 759 |
| BceAI | ACGGC | 1 cut(s) | 522 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 108, 142 |
| BciT130I | CCWGG | 4 cut(s) | 162, 252, 282, 637 |
| BcnI | CCSGG | 4 cut(s) | 77, 687, 758, 759 |
| BcoDI | GTCTC | 1 cut(s) | 771 |
| BfaI | CTAG | 2 cut(s) | 378, 744 |
| BfoI | RGCGCY | 2 cut(s) | 311, 553 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 144 |
| BisI | GCNGC | 6 cut(s) | 145, 175, 248, 306, 426, 484 |
| BlsI | GCNGC | 6 cut(s) | 146, 176, 249, 307, 427, 485 |
| BmcAI | AGTACT | 1 cut(s) | 617 |
| Bme1390I | CCNGG | 8 cut(s) | 77, 162, 252, 282, 637, 687, 758, 759 |
| Bme18I | GGWCC | 1 cut(s) | 374 |
| BmeT110I | CYCGRG | 3 cut(s) | 117, 659, 757 |
| BmgBI | CACGTC | 1 cut(s) | 134 |
| BmgT120I | GGNCC | 4 cut(s) | 79, 80, 278, 374 |
| BmiI | GGNNCC | 8 cut(s) | 80, 81, 112, 124, 375, 551, 653, 741 |
| BmrFI | CCNGG | 8 cut(s) | 77, 162, 252, 282, 637, 687, 758, 759 |
| BmrI | ACTGGG | 1 cut(s) | 710 |
| BmsI | GCATC | 1 cut(s) | 565 |
| BmuI | ACTGGG | 1 cut(s) | 710 |
| BpiI | GAAGAC | 1 cut(s) | 67 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 681, 713 |
| BpmI | CTGGAG | 2 cut(s) | 273, 531 |
| Bpu10I | CCTNAGC | 1 cut(s) | 445 |
| BpuMI | CCSGG | 4 cut(s) | 77, 687, 758, 759 |
| BsaHI | GRCGYC | 2 cut(s) | 550, 726 |
| BsaI | GGTCTC | 1 cut(s) | 771 |
| BsaJI | CCNNGG | 7 cut(s) | 76, 118, 280, 281, 635, 721, 757 |
| Bse118I | RCCGGY | 1 cut(s) | 578 |
| Bse1I | ACTGG | 1 cut(s) | 716 |
| BseBI | CCWGG | 4 cut(s) | 162, 252, 282, 637 |
| BseDI | CCNNGG | 7 cut(s) | 76, 118, 280, 281, 635, 721, 757 |
| BseGI | GGATG | 1 cut(s) | 770 |
| BseMII | CTCAG | 3 cut(s) | 522, 528, 714 |
| BseNI | ACTGG | 1 cut(s) | 716 |
| BseRI | GAGGAG | 4 cut(s) | 66, 69, 285, 554 |
| BseSI | GKGCMC | 1 cut(s) | 83 |
| BseXI | GCAGC | 3 cut(s) | 161, 317, 412 |
| BseYI | CCCAGC | 1 cut(s) | 735 |
| Bsh1236I | CGCG | 1 cut(s) | 85 |
| Bsh1285I | CGRYCG | 1 cut(s) | 583 |
| BshFI | GGCC | 5 cut(s) | 81, 138, 250, 279, 321 |
| BshNI | GGYRCC | 2 cut(s) | 549, 651 |
| BsiEI | CGRYCG | 1 cut(s) | 583 |
| BsiHKCI | CYCGRG | 3 cut(s) | 117, 659, 757 |
| BsiSI | CCGG | 5 cut(s) | 43, 76, 579, 687, 758 |
| BslFI | GGGAC | 4 cut(s) | 387, 404, 684, 713 |
| BsmAI | GTCTC | 1 cut(s) | 771 |
| BsmFI | GGGAC | 4 cut(s) | 387, 404, 684, 713 |
| BsnI | GGCC | 5 cut(s) | 81, 138, 250, 279, 321 |
| Bso31I | GGTCTC | 1 cut(s) | 771 |
| BsoBI | CYCGRG | 3 cut(s) | 117, 659, 757 |
| Bsp120I | GGGCCC | 1 cut(s) | 79 |
| Bsp1286I | GDGCHC | 1 cut(s) | 83 |
| Bsp143I | GATC | 1 cut(s) | 431 |
| BspANI | GGCC | 5 cut(s) | 81, 138, 250, 279, 321 |
| BspCNI | CTCAG | 3 cut(s) | 523, 529, 713 |
| BspFNI | CGCG | 1 cut(s) | 85 |
| BspLI | GGNNCC | 8 cut(s) | 80, 81, 112, 124, 375, 551, 653, 741 |
| BspPI | GGATC | 1 cut(s) | 439 |
| BspT107I | GGYRCC | 2 cut(s) | 549, 651 |
| BspTNI | GGTCTC | 1 cut(s) | 771 |
| BsrBI | CCGCTC | 4 cut(s) | 233, 371, 383, 546 |
| BsrFI | RCCGGY | 1 cut(s) | 578 |
| BsrI | ACTGG | 1 cut(s) | 716 |
| BssAI | RCCGGY | 1 cut(s) | 578 |
| BssECI | CCNNGG | 7 cut(s) | 76, 118, 280, 281, 635, 721, 757 |
| BssMI | GATC | 1 cut(s) | 431 |
| BssNI | GRCGYC | 2 cut(s) | 550, 726 |
| BssSI | CACGAG | 2 cut(s) | 5, 343 |
| BssT1I | CCWWGG | 1 cut(s) | 721 |
| Bst2BI | CACGAG | 2 cut(s) | 5, 343 |
| Bst2UI | CCWGG | 4 cut(s) | 162, 252, 282, 637 |
| Bst4CI | ACNGT | 3 cut(s) | 327, 394, 675 |
| BstACI | GRCGYC | 2 cut(s) | 550, 726 |
| BstC8I | GCNNGC | 7 cut(s) | 83, 87, 109, 231, 527, 548, 656 |
| BstDEI | CTNAG | 4 cut(s) | 445, 531, 537, 700 |
| BstF5I | GGATG | 1 cut(s) | 770 |
| BstFNI | CGCG | 1 cut(s) | 85 |
| BstH2I | RGCGCY | 2 cut(s) | 311, 553 |
| BstHHI | GCGC | 2 cut(s) | 310, 552 |
| BstKTI | GATC | 1 cut(s) | 434 |
| BstMAI | GTCTC | 1 cut(s) | 771 |
| BstMBI | GATC | 1 cut(s) | 431 |
| BstMCI | CGRYCG | 1 cut(s) | 583 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 113, 135, 144, 180, 584, 732 |
| BstNI | CCWGG | 4 cut(s) | 162, 252, 282, 637 |
| BstNSI | RCATGY | 1 cut(s) | 419 |
| BstSCI | CCNGG | 8 cut(s) | 75, 160, 250, 280, 635, 685, 756, 757 |
| BstSLI | GKGCMC | 1 cut(s) | 83 |
| BstUI | CGCG | 1 cut(s) | 85 |
| BstV1I | GCAGC | 3 cut(s) | 161, 317, 412 |
| BstV2I | GAAGAC | 1 cut(s) | 67 |
| BsuRI | GGCC | 5 cut(s) | 81, 138, 250, 279, 321 |
| BtrI | CACGTC | 1 cut(s) | 134 |
| BtsCI | GGATG | 1 cut(s) | 770 |
| BtsIMutI | CAGTG | 2 cut(s) | 606, 680 |
| Cac8I | GCNNGC | 7 cut(s) | 83, 87, 109, 231, 527, 548, 656 |
| CfoI | GCGC | 2 cut(s) | 310, 552 |
| Cfr10I | RCCGGY | 1 cut(s) | 578 |
| Cfr13I | GGNCC | 4 cut(s) | 79, 80, 278, 374 |
| Cfr9I | CCCGGG | 1 cut(s) | 757 |
| CseI | GACGC | 2 cut(s) | 348, 715 |
| Csp6I | GTAC | 2 cut(s) | 151, 616 |
| CviAII | CATG | 1 cut(s) | 416 |
| CviQI | GTAC | 2 cut(s) | 151, 616 |
| DdeI | CTNAG | 4 cut(s) | 445, 531, 537, 700 |
| DinI | GGCGCC | 1 cut(s) | 551 |
| DpnI | GATC | 1 cut(s) | 433 |
| DpnII | GATC | 1 cut(s) | 431 |
| EaeI | YGGCCR | 1 cut(s) | 136 |
| EciI | GGCGGA | 3 cut(s) | 103, 694, 777 |
| Eco130I | CCWWGG | 1 cut(s) | 721 |
| Eco24I | GRGCYC | 1 cut(s) | 83 |
| Eco31I | GGTCTC | 1 cut(s) | 771 |
| Eco47I | GGWCC | 1 cut(s) | 374 |
| Eco47III | AGCGCT | 1 cut(s) | 309 |
| Eco57I | CTGAAG | 1 cut(s) | 453 |
| Eco88I | CYCGRG | 3 cut(s) | 117, 659, 757 |
| EcoO109I | RGGNCCY | 2 cut(s) | 79, 374 |
| EcoRII | CCWGG | 4 cut(s) | 160, 250, 280, 635 |
| EcoT14I | CCWWGG | 1 cut(s) | 721 |
| EcoT38I | GRGCYC | 1 cut(s) | 83 |
| EgeI | GGCGCC | 1 cut(s) | 551 |
| EheI | GGCGCC | 1 cut(s) | 551 |
| ErhI | CCWWGG | 1 cut(s) | 721 |
| FaeI | CATG | 1 cut(s) | 419 |
| FaiI | YATR | 3 cut(s) | 218, 417, 706 |
| FaqI | GGGAC | 4 cut(s) | 387, 404, 684, 713 |
| FatI | CATG | 1 cut(s) | 415 |
| FauI | CCCGC | 9 cut(s) | 39, 90, 140, 259, 364, 421, 466, 534, 539 |
| Fnu4HI | GCNGC | 6 cut(s) | 145, 175, 248, 306, 426, 484 |
| FokI | GGATG | 1 cut(s) | 777 |
| FriOI | GRGCYC | 1 cut(s) | 83 |
| Fsp4HI | GCNGC | 6 cut(s) | 145, 175, 248, 306, 426, 484 |
| FspBI | CTAG | 2 cut(s) | 378, 744 |
| GlaI | GCGC | 2 cut(s) | 309, 551 |
| GluI | GCNGC | 6 cut(s) | 145, 175, 248, 306, 426, 484 |
| GsaI | CCCAGC | 1 cut(s) | 739 |
| GsuI | CTGGAG | 2 cut(s) | 273, 531 |
| HaeII | RGCGCY | 2 cut(s) | 311, 553 |
| HaeIII | GGCC | 5 cut(s) | 81, 138, 250, 279, 321 |
| HapII | CCGG | 5 cut(s) | 43, 76, 579, 687, 758 |
| HgaI | GACGC | 2 cut(s) | 348, 715 |
| HhaI | GCGC | 2 cut(s) | 310, 552 |
| Hin1I | GRCGYC | 2 cut(s) | 550, 726 |
| Hin1II | CATG | 1 cut(s) | 419 |
| Hin6I | GCGC | 2 cut(s) | 308, 550 |
| HinP1I | GCGC | 2 cut(s) | 308, 550 |
| HincII | GTYRAC | 1 cut(s) | 33 |
| HindII | GTYRAC | 1 cut(s) | 33 |
| HinfI | GANTC | 6 cut(s) | 39, 165, 477, 533, 682, 696 |
| HpaII | CCGG | 5 cut(s) | 43, 76, 579, 687, 758 |
| HphI | GGTGA | 3 cut(s) | 213, 213, 528 |
| Hpy166II | GTNNAC | 1 cut(s) | 33 |
| Hpy188I | TCNGA | 1 cut(s) | 538 |
| Hpy188III | TCNNGA | 1 cut(s) | 191 |
| Hpy8I | GTNNAC | 1 cut(s) | 33 |
| HpyAV | CCTTC | 6 cut(s) | 280, 449, 477, 560, 590, 642 |
| HpyCH4III | ACNGT | 3 cut(s) | 327, 394, 675 |
| HpyCH4IV | ACGT | 2 cut(s) | 64, 133 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 113, 135, 144, 180, 584, 732 |
| HpyF3I | CTNAG | 4 cut(s) | 445, 531, 537, 700 |
| HpySE526I | ACGT | 2 cut(s) | 64, 133 |
| Hsp92I | GRCGYC | 2 cut(s) | 550, 726 |
| Hsp92II | CATG | 1 cut(s) | 419 |
| HspAI | GCGC | 2 cut(s) | 308, 550 |
| KasI | GGCGCC | 1 cut(s) | 549 |
| Kzo9I | GATC | 1 cut(s) | 431 |
| LmnI | GCTCC | 4 cut(s) | 116, 128, 302, 407 |
| Lsp1109I | GCAGC | 3 cut(s) | 161, 317, 412 |
| LweI | GCATC | 1 cut(s) | 565 |
| MaeI | CTAG | 2 cut(s) | 378, 744 |
| MaeII | ACGT | 2 cut(s) | 64, 133 |
| MalI | GATC | 1 cut(s) | 433 |
| MbiI | CCGCTC | 4 cut(s) | 233, 371, 383, 546 |
| MboI | GATC | 1 cut(s) | 431 |
| MboII | GAAGA | 2 cut(s) | 72, 107 |
| MhlI | GDGCHC | 1 cut(s) | 83 |
| MlsI | TGGCCA | 1 cut(s) | 138 |
| MluNI | TGGCCA | 1 cut(s) | 138 |
| Mly113I | GGCGCC | 1 cut(s) | 550 |
| MlyI | GAGTC | 6 cut(s) | 33, 159, 486, 542, 676, 690 |
| MmeI | TCCRAC | 3 cut(s) | 385, 615, 735 |
| Mox20I | TGGCCA | 1 cut(s) | 138 |
| MroXI | GAANNNNTTC | 1 cut(s) | 466 |
| MscI | TGGCCA | 1 cut(s) | 138 |
| MseI | TTAA | 2 cut(s) | 312, 502 |
| MslI | CAYNNNNRTG | 1 cut(s) | 9 |
| Msp20I | TGGCCA | 1 cut(s) | 138 |
| MspA1I | CMGCKG | 1 cut(s) | 473 |
| MspI | CCGG | 5 cut(s) | 43, 76, 579, 687, 758 |
| MspR9I | CCNGG | 8 cut(s) | 77, 162, 252, 282, 637, 687, 758, 759 |
| MvaI | CCWGG | 4 cut(s) | 162, 252, 282, 637 |
| MvnI | CGCG | 1 cut(s) | 85 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 113, 135, 144, 180, 584, 732 |
| NarI | GGCGCC | 1 cut(s) | 550 |
| NciI | CCSGG | 4 cut(s) | 77, 687, 758, 759 |
| NdeII | GATC | 1 cut(s) | 431 |
| NlaIII | CATG | 1 cut(s) | 419 |
| NlaIV | GGNNCC | 8 cut(s) | 80, 81, 112, 124, 375, 551, 653, 741 |
| NmeAIII | GCCGAG | 1 cut(s) | 209 |
| NspI | RCATGY | 1 cut(s) | 419 |
| OliI | CACNNNNGTG | 1 cut(s) | 9 |
| PasI | CCCWGGG | 1 cut(s) | 281 |
| PciI | ACATGT | 1 cut(s) | 415 |
| PdmI | GAANNNNTTC | 1 cut(s) | 466 |
| PfoI | TCCNGGA | 1 cut(s) | 685 |
| PkrI | GCNGC | 6 cut(s) | 146, 176, 249, 307, 427, 485 |
| PleI | GAGTC | 6 cut(s) | 33, 159, 485, 541, 676, 690 |
| PluTI | GGCGCC | 1 cut(s) | 553 |
| PpsI | GAGTC | 6 cut(s) | 33, 159, 485, 541, 676, 690 |
| PpuMI | RGGWCCY | 1 cut(s) | 374 |
| PscI | ACATGT | 1 cut(s) | 415 |
| Psp5II | RGGWCCY | 1 cut(s) | 374 |
| Psp6I | CCWGG | 4 cut(s) | 160, 250, 280, 635 |
| PspFI | CCCAGC | 1 cut(s) | 735 |
| PspGI | CCWGG | 4 cut(s) | 160, 250, 280, 635 |
| PspN4I | GGNNCC | 8 cut(s) | 80, 81, 112, 124, 375, 551, 653, 741 |
| PspOMI | GGGCCC | 1 cut(s) | 79 |
| PspPI | GGNCC | 4 cut(s) | 79, 80, 278, 374 |
| PspPPI | RGGWCCY | 1 cut(s) | 374 |
| RsaI | GTAC | 2 cut(s) | 152, 617 |
| RsaNI | GTAC | 2 cut(s) | 151, 616 |
| RseI | CAYNNNNRTG | 1 cut(s) | 9 |
| SaqAI | TTAA | 2 cut(s) | 312, 502 |
| SatI | GCNGC | 6 cut(s) | 145, 175, 248, 306, 426, 484 |
| Sau3AI | GATC | 1 cut(s) | 431 |
| Sau96I | GGNCC | 4 cut(s) | 79, 80, 278, 374 |
| ScaI | AGTACT | 1 cut(s) | 617 |
| SchI | GAGTC | 6 cut(s) | 33, 159, 486, 542, 676, 690 |
| ScrFI | CCNGG | 8 cut(s) | 77, 162, 252, 282, 637, 687, 758, 759 |
| SduI | GDGCHC | 1 cut(s) | 83 |
| SfaNI | GCATC | 1 cut(s) | 565 |
| SfoI | GGCGCC | 1 cut(s) | 551 |
| SinI | GGWCC | 1 cut(s) | 374 |
| SmaI | CCCGGG | 1 cut(s) | 759 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 9 |
| SspDI | GGCGCC | 1 cut(s) | 549 |
| SspMI | CTAG | 2 cut(s) | 378, 744 |
| StyD4I | CCNGG | 8 cut(s) | 75, 160, 250, 280, 635, 685, 756, 757 |
| StyI | CCWWGG | 1 cut(s) | 721 |
| TaaI | ACNGT | 3 cut(s) | 327, 394, 675 |
| TaiI | ACGT | 2 cut(s) | 67, 136 |
| TaqI | TCGA | 4 cut(s) | 93, 496, 556, 573 |
| TatI | WGTACW | 1 cut(s) | 615 |
| TauI | GCSGC | 3 cut(s) | 147, 250, 486 |
| Tru1I | TTAA | 2 cut(s) | 312, 502 |
| Tru9I | TTAA | 2 cut(s) | 312, 502 |
| TscAI | CASTG | 2 cut(s) | 613, 680 |
| TseI | GCWGC | 3 cut(s) | 174, 305, 425 |
| TspMI | CCCGGG | 1 cut(s) | 757 |
| TspRI | CASTG | 2 cut(s) | 613, 680 |
| VpaK11BI | GGWCC | 1 cut(s) | 374 |
| XceI | RCATGY | 1 cut(s) | 419 |
| XmaI | CCCGGG | 1 cut(s) | 757 |
| XmnI | GAANNNNTTC | 1 cut(s) | 466 |
| XspI | CTAG | 2 cut(s) | 378, 744 |
| ZrmI | AGTACT | 1 cut(s) | 617 |