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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| AccB1I | GGYRCC | 3 cut(s) | 835, 1670, 1706 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 1716 |
| AccBSI | CCGCTC | 4 cut(s) | 1135, 1273, 1414, 1426 |
| AccI | GTMKAC | 1 cut(s) | 708 |
| AccII | CGCG | 6 cut(s) | 62, 180, 483, 577, 913, 987 |
| AclWI | GGATC | 2 cut(s) | 317, 570 |
| AcoI | YGGCCR | 4 cut(s) | 3, 1398, 1482, 1599 |
| AcsI | RAATTY | 2 cut(s) | 73, 1112 |
| AcuI | CTGAAG | 2 cut(s) | 66, 1180 |
| AcyI | GRCGYC | 5 cut(s) | 9, 618, 666, 836, 1250 |
| AfaI | GTAC | 6 cut(s) | 422, 455, 674, 1619, 1637, 1777 |
| AfeI | AGCGCT | 2 cut(s) | 855, 1579 |
| AflIII | ACRYGT | 2 cut(s) | 575, 1458 |
| AgsI | TTSAA | 3 cut(s) | 587, 888, 1505 |
| AjiI | CACGTC | 1 cut(s) | 1216 |
| AjnI | CCWGG | 5 cut(s) | 595, 1062, 1152, 1242, 1795 |
| AleI | CACNNNNGTG | 1 cut(s) | 914 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1098, 1130 |
| AluBI | AGCT | 6 cut(s) | 290, 754, 1013, 1279, 1396, 1552 |
| AluI | AGCT | 6 cut(s) | 290, 754, 1013, 1279, 1396, 1552 |
| Alw21I | GWGCWC | 1 cut(s) | 1281 |
| AlwI | GGATC | 2 cut(s) | 317, 570 |
| Aor51HI | AGCGCT | 2 cut(s) | 855, 1579 |
| ApaI | GGGCCC | 1 cut(s) | 985 |
| ApoI | RAATTY | 2 cut(s) | 73, 1112 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 919, 951 |
| AspLEI | GCGC | 8 cut(s) | 62, 182, 246, 295, 694, 838, 856, 1580 |
| AspS9I | GGNCC | 7 cut(s) | 403, 637, 742, 981, 982, 1297, 1891 |
| AsuC2I | CCSGG | 3 cut(s) | 277, 544, 614 |
| AsuHPI | GGTGA | 6 cut(s) | 296, 797, 1115, 1115, 1571, 1732 |
| AvaII | GGWCC | 4 cut(s) | 403, 637, 742, 1891 |
| BaeGI | GKGCMC | 2 cut(s) | 985, 1215 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 708, 741 |
| BanI | GGYRCC | 3 cut(s) | 835, 1670, 1706 |
| BanII | GRGCYC | 2 cut(s) | 985, 1281 |
| BauI | CACGAG | 2 cut(s) | 465, 1386 |
| BbsI | GAAGAC | 1 cut(s) | 1872 |
| Bbv12I | GWGCWC | 1 cut(s) | 1281 |
| BbvCI | CCTCAGC | 2 cut(s) | 1539, 1581 |
| BccI | CCATC | 4 cut(s) | 296, 500, 1300, 1718 |
| BceAI | ACGGC | 8 cut(s) | 566, 918, 1163, 1205, 1218, 1385, 1575, 1592 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 356, 390, 1716, 1750 |
| BciT130I | CCWGG | 5 cut(s) | 597, 1064, 1154, 1244, 1797 |
| BcnI | CCSGG | 3 cut(s) | 277, 544, 614 |
| BfaI | CTAG | 3 cut(s) | 131, 201, 248 |
| BfmI | CTRYAG | 6 cut(s) | 146, 894, 920, 1301, 1511, 1694 |
| BfoI | RGCGCY | 4 cut(s) | 247, 839, 857, 1581 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1535 |
| BglII | AGATCT | 1 cut(s) | 41 |
| BlpI | GCTNAGC | 2 cut(s) | 728, 1014 |
| Bme1390I | CCNGG | 8 cut(s) | 277, 544, 597, 614, 1064, 1154, 1244, 1797 |
| Bme18I | GGWCC | 4 cut(s) | 403, 637, 742, 1891 |
| BmgBI | CACGTC | 1 cut(s) | 1216 |
| BmgT120I | GGNCC | 7 cut(s) | 403, 637, 742, 981, 982, 1297, 1891 |
| BmrFI | CCNGG | 8 cut(s) | 277, 544, 597, 614, 1064, 1154, 1244, 1797 |
| BmrI | ACTGGG | 3 cut(s) | 987, 1726, 1870 |
| BmsI | GCATC | 3 cut(s) | 952, 1363, 1736 |
| BmuI | ACTGGG | 3 cut(s) | 987, 1726, 1870 |
| BpiI | GAAGAC | 1 cut(s) | 1872 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 303, 335, 1841, 1873 |
| BpmI | CTGGAG | 3 cut(s) | 931, 1175, 1574 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1280, 1488, 1539, 1574, 1581 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 728, 1014 |
| BpuEI | CTTGAG | 1 cut(s) | 1427 |
| BpuMI | CCSGG | 3 cut(s) | 277, 544, 614 |
| Bsa29I | ATCGAT | 1 cut(s) | 1730 |
| BsaHI | GRCGYC | 5 cut(s) | 9, 618, 666, 836, 1250 |
| BsaJI | CCNNGG | 7 cut(s) | 158, 596, 633, 839, 1020, 1608, 1674 |
| Bse118I | RCCGGY | 1 cut(s) | 1667 |
| Bse1I | ACTGG | 4 cut(s) | 443, 982, 1721, 1876 |
| Bse3DI | GCAATG | 2 cut(s) | 182, 1653 |
| BseBI | CCWGG | 5 cut(s) | 597, 1064, 1154, 1244, 1797 |
| BseCI | ATCGAT | 1 cut(s) | 1730 |
| BseDI | CCNNGG | 7 cut(s) | 158, 596, 633, 839, 1020, 1608, 1674 |
| BseGI | GGATG | 2 cut(s) | 967, 1891 |
| BseMI | GCAATG | 2 cut(s) | 182, 1653 |
| BseMII | CTCAG | 7 cut(s) | 719, 1028, 1294, 1530, 1565, 1572, 1874 |
| BseNI | ACTGG | 4 cut(s) | 443, 982, 1721, 1876 |
| BseRI | GAGGAG | 3 cut(s) | 324, 1301, 1844 |
| BseSI | GKGCMC | 2 cut(s) | 985, 1215 |
| BseX3I | CGGCCG | 1 cut(s) | 1599 |
| Bsh1236I | CGCG | 6 cut(s) | 62, 180, 483, 577, 913, 987 |
| Bsh1285I | CGRYCG | 3 cut(s) | 410, 1602, 1740 |
| BshNI | GGYRCC | 3 cut(s) | 835, 1670, 1706 |
| BshVI | ATCGAT | 1 cut(s) | 1730 |
| BsiEI | CGRYCG | 3 cut(s) | 410, 1602, 1740 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1281 |
| BsiSI | CCGG | 5 cut(s) | 277, 543, 613, 1668, 1847 |
| BslFI | GGGAC | 7 cut(s) | 176, 629, 728, 826, 1430, 1447, 1879 |
| BsmFI | GGGAC | 7 cut(s) | 176, 629, 728, 826, 1430, 1447, 1879 |
| Bsp120I | GGGCCC | 1 cut(s) | 981 |
| Bsp1286I | GDGCHC | 3 cut(s) | 985, 1215, 1281 |
| Bsp143I | GATC | 5 cut(s) | 41, 322, 407, 562, 648 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 728, 1014 |
| Bsp19I | CCATGG | 2 cut(s) | 633, 1674 |
| BspCNI | CTCAG | 7 cut(s) | 720, 1027, 1293, 1531, 1566, 1573, 1873 |
| BspDI | ATCGAT | 1 cut(s) | 1730 |
| BspFNI | CGCG | 6 cut(s) | 62, 180, 483, 577, 913, 987 |
| BspMAI | CTGCAG | 4 cut(s) | 898, 924, 1515, 1698 |
| BspPI | GGATC | 2 cut(s) | 317, 570 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BspT107I | GGYRCC | 3 cut(s) | 835, 1670, 1706 |
| BsrBI | CCGCTC | 4 cut(s) | 1135, 1273, 1414, 1426 |
| BsrDI | GCAATG | 2 cut(s) | 182, 1653 |
| BsrFI | RCCGGY | 1 cut(s) | 1667 |
| BsrI | ACTGG | 4 cut(s) | 443, 982, 1721, 1876 |
| BssAI | RCCGGY | 1 cut(s) | 1667 |
| BssECI | CCNNGG | 7 cut(s) | 158, 596, 633, 839, 1020, 1608, 1674 |
| BssMI | GATC | 5 cut(s) | 41, 322, 407, 562, 648 |
| BssNI | GRCGYC | 5 cut(s) | 9, 618, 666, 836, 1250 |
| BssSI | CACGAG | 2 cut(s) | 465, 1386 |
| BssT1I | CCWWGG | 3 cut(s) | 633, 1020, 1674 |
| Bst2BI | CACGAG | 2 cut(s) | 465, 1386 |
| Bst2UI | CCWGG | 5 cut(s) | 597, 1064, 1154, 1244, 1797 |
| Bst4CI | ACNGT | 5 cut(s) | 641, 703, 1103, 1370, 1437 |
| Bst6I | CTCTTC | 3 cut(s) | 234, 468, 951 |
| BstACI | GRCGYC | 5 cut(s) | 9, 618, 666, 836, 1250 |
| BstDSI | CCRYGG | 5 cut(s) | 158, 633, 839, 1608, 1674 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 737, 1514 |
| BstF5I | GGATG | 2 cut(s) | 967, 1891 |
| BstFNI | CGCG | 6 cut(s) | 62, 180, 483, 577, 913, 987 |
| BstH2I | RGCGCY | 4 cut(s) | 247, 839, 857, 1581 |
| BstHHI | GCGC | 8 cut(s) | 62, 182, 246, 295, 694, 838, 856, 1580 |
| BstKTI | GATC | 5 cut(s) | 44, 325, 410, 565, 651 |
| BstMBI | GATC | 5 cut(s) | 41, 322, 407, 562, 648 |
| BstMCI | CGRYCG | 3 cut(s) | 410, 1602, 1740 |
| BstNI | CCWGG | 5 cut(s) | 597, 1064, 1154, 1244, 1797 |
| BstNSI | RCATGY | 2 cut(s) | 1462, 1572 |
| BstSCI | CCNGG | 8 cut(s) | 275, 542, 595, 612, 1062, 1152, 1242, 1795 |
| BstSFI | CTRYAG | 6 cut(s) | 146, 894, 920, 1301, 1511, 1694 |
| BstSLI | GKGCMC | 2 cut(s) | 985, 1215 |
| BstUI | CGCG | 6 cut(s) | 62, 180, 483, 577, 913, 987 |
| BstV2I | GAAGAC | 1 cut(s) | 1872 |
| BstX2I | RGATCY | 1 cut(s) | 41 |
| BstYI | RGATCY | 1 cut(s) | 41 |
| BstZI | CGGCCG | 1 cut(s) | 1599 |
| Bsu15I | ATCGAT | 1 cut(s) | 1730 |
| BsuTUI | ATCGAT | 1 cut(s) | 1730 |
| BtgI | CCRYGG | 5 cut(s) | 158, 633, 839, 1608, 1674 |
| BtrI | CACGTC | 1 cut(s) | 1216 |
| BtsCI | GGATG | 2 cut(s) | 967, 1891 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 1788 |
| BtsIMutI | CAGTG | 4 cut(s) | 34, 116, 708, 1788 |
| CciNI | GCGGCCGC | 1 cut(s) | 1599 |
| CfoI | GCGC | 8 cut(s) | 62, 182, 246, 295, 694, 838, 856, 1580 |
| Cfr10I | RCCGGY | 1 cut(s) | 1667 |
| Cfr13I | GGNCC | 7 cut(s) | 403, 637, 742, 981, 982, 1297, 1891 |
| ClaI | ATCGAT | 1 cut(s) | 1730 |
| CseI | GACGC | 7 cut(s) | 80, 176, 583, 626, 674, 1239, 1391 |
| Csp6I | GTAC | 6 cut(s) | 421, 454, 673, 1618, 1636, 1776 |
| CviAII | CATG | 9 cut(s) | 104, 227, 634, 670, 1054, 1232, 1459, 1569, 1675 |
| CviQI | GTAC | 6 cut(s) | 421, 454, 673, 1618, 1636, 1776 |
| DinI | GGCGCC | 1 cut(s) | 837 |
| DpnI | GATC | 5 cut(s) | 43, 324, 409, 564, 650 |
| DpnII | GATC | 5 cut(s) | 41, 322, 407, 562, 648 |
| EaeI | YGGCCR | 4 cut(s) | 3, 1398, 1482, 1599 |
| EagI | CGGCCG | 1 cut(s) | 1599 |
| Eam1104I | CTCTTC | 3 cut(s) | 234, 468, 951 |
| EarI | CTCTTC | 3 cut(s) | 234, 468, 951 |
| EciI | GGCGGA | 8 cut(s) | 80, 430, 521, 523, 582, 1394, 1752, 1854 |
| Ecl136II | GAGCTC | 1 cut(s) | 1279 |
| EclXI | CGGCCG | 1 cut(s) | 1599 |
| Eco130I | CCWWGG | 3 cut(s) | 633, 1020, 1674 |
| Eco147I | AGGCCT | 2 cut(s) | 318, 892 |
| Eco24I | GRGCYC | 2 cut(s) | 985, 1281 |
| Eco47I | GGWCC | 4 cut(s) | 403, 637, 742, 1891 |
| Eco47III | AGCGCT | 2 cut(s) | 855, 1579 |
| Eco52I | CGGCCG | 1 cut(s) | 1599 |
| Eco53kI | GAGCTC | 1 cut(s) | 1279 |
| Eco57I | CTGAAG | 2 cut(s) | 66, 1180 |
| EcoICRI | GAGCTC | 1 cut(s) | 1279 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 737, 1514 |
| EcoO109I | RGGNCCY | 2 cut(s) | 742, 981 |
| EcoRI | GAATTC | 1 cut(s) | 1112 |
| EcoRII | CCWGG | 5 cut(s) | 595, 1062, 1152, 1242, 1795 |
| EcoT14I | CCWWGG | 3 cut(s) | 633, 1020, 1674 |
| EcoT38I | GRGCYC | 2 cut(s) | 985, 1281 |
| EgeI | GGCGCC | 1 cut(s) | 837 |
| EheI | GGCGCC | 1 cut(s) | 837 |
| ErhI | CCWWGG | 3 cut(s) | 633, 1020, 1674 |
| FaeI | CATG | 9 cut(s) | 107, 230, 637, 673, 1057, 1235, 1462, 1572, 1678 |
| FaqI | GGGAC | 7 cut(s) | 176, 629, 728, 826, 1430, 1447, 1879 |
| FatI | CATG | 9 cut(s) | 103, 226, 633, 669, 1053, 1231, 1458, 1568, 1674 |
| FblI | GTMKAC | 1 cut(s) | 708 |
| FokI | GGATG | 1 cut(s) | 974 |
| FriOI | GRGCYC | 2 cut(s) | 985, 1281 |
| FspBI | CTAG | 3 cut(s) | 131, 201, 248 |
| GlaI | GCGC | 8 cut(s) | 61, 181, 245, 294, 693, 837, 855, 1579 |
| GsuI | CTGGAG | 3 cut(s) | 931, 1175, 1574 |
| HaeII | RGCGCY | 4 cut(s) | 247, 839, 857, 1581 |
| HapII | CCGG | 5 cut(s) | 277, 543, 613, 1668, 1847 |
| HgaI | GACGC | 7 cut(s) | 80, 176, 583, 626, 674, 1239, 1391 |
| HhaI | GCGC | 8 cut(s) | 62, 182, 246, 295, 694, 838, 856, 1580 |
| Hin1I | GRCGYC | 5 cut(s) | 9, 618, 666, 836, 1250 |
| Hin1II | CATG | 9 cut(s) | 107, 230, 637, 673, 1057, 1235, 1462, 1572, 1678 |
| Hin6I | GCGC | 8 cut(s) | 60, 180, 244, 293, 692, 836, 854, 1578 |
| HinP1I | GCGC | 8 cut(s) | 60, 180, 244, 293, 692, 836, 854, 1578 |
| HincII | GTYRAC | 3 cut(s) | 938, 1173, 1183 |
| HindII | GTYRAC | 3 cut(s) | 938, 1173, 1183 |
| HinfI | GANTC | 8 cut(s) | 35, 83, 463, 511, 1067, 1520, 1613, 1867 |
| HpaI | GTTAAC | 1 cut(s) | 1183 |
| HpaII | CCGG | 5 cut(s) | 277, 543, 613, 1668, 1847 |
| HphI | GGTGA | 6 cut(s) | 296, 797, 1115, 1115, 1571, 1732 |
| Hpy166II | GTNNAC | 5 cut(s) | 709, 938, 1106, 1173, 1183 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 270, 497, 739, 1885 |
| Hpy188III | TCNNGA | 5 cut(s) | 39, 191, 467, 625, 1254 |
| Hpy8I | GTNNAC | 5 cut(s) | 709, 938, 1106, 1173, 1183 |
| Hpy99I | CGWCG | 3 cut(s) | 11, 880, 1220 |
| HpyCH4III | ACNGT | 5 cut(s) | 641, 703, 1103, 1370, 1437 |
| HpyCH4IV | ACGT | 2 cut(s) | 9, 1215 |
| HpyCH4V | TGCA | 7 cut(s) | 107, 896, 922, 1231, 1513, 1568, 1696 |
| HpySE526I | ACGT | 2 cut(s) | 9, 1215 |
| Hsp92I | GRCGYC | 5 cut(s) | 9, 618, 666, 836, 1250 |
| Hsp92II | CATG | 9 cut(s) | 107, 230, 637, 673, 1057, 1235, 1462, 1572, 1678 |
| HspAI | GCGC | 8 cut(s) | 60, 180, 244, 293, 692, 836, 854, 1578 |
| KasI | GGCGCC | 1 cut(s) | 835 |
| KspAI | GTTAAC | 1 cut(s) | 1183 |
| Kzo9I | GATC | 5 cut(s) | 41, 322, 407, 562, 648 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| LmnI | GCTCC | 8 cut(s) | 493, 868, 1030, 1276, 1423, 1450, 1587, 1798 |
| LweI | GCATC | 3 cut(s) | 952, 1363, 1736 |
| MaeI | CTAG | 3 cut(s) | 131, 201, 248 |
| MaeII | ACGT | 2 cut(s) | 9, 1215 |
| MaeIII | GTNAC | 3 cut(s) | 785, 1058, 1347 |
| MalI | GATC | 5 cut(s) | 43, 324, 409, 564, 650 |
| MbiI | CCGCTC | 4 cut(s) | 1135, 1273, 1414, 1426 |
| MboI | GATC | 5 cut(s) | 41, 322, 407, 562, 648 |
| MboII | GAAGA | 6 cut(s) | 251, 485, 968, 1009, 1765, 1872 |
| MflI | RGATCY | 1 cut(s) | 41 |
| MhlI | GDGCHC | 3 cut(s) | 985, 1215, 1281 |
| MluCI | AATT | 3 cut(s) | 73, 655, 1112 |
| MluI | ACGCGT | 1 cut(s) | 575 |
| Mly113I | GGCGCC | 1 cut(s) | 836 |
| MlyI | GAGTC | 5 cut(s) | 77, 457, 1061, 1622, 1861 |
| MmeI | TCCRAC | 3 cut(s) | 846, 1204, 1428 |
| MseI | TTAA | 1 cut(s) | 1182 |
| MslI | CAYNNNNRTG | 2 cut(s) | 780, 914 |
| MspA1I | CMGCKG | 5 cut(s) | 221, 333, 821, 1552, 1896 |
| MspI | CCGG | 5 cut(s) | 277, 543, 613, 1668, 1847 |
| MspR9I | CCNGG | 8 cut(s) | 277, 544, 597, 614, 1064, 1154, 1244, 1797 |
| MvaI | CCWGG | 5 cut(s) | 597, 1064, 1154, 1244, 1797 |
| MvnI | CGCG | 6 cut(s) | 62, 180, 483, 577, 913, 987 |
| NarI | GGCGCC | 1 cut(s) | 836 |
| NciI | CCSGG | 3 cut(s) | 277, 544, 614 |
| NcoI | CCATGG | 2 cut(s) | 633, 1674 |
| NdeII | GATC | 5 cut(s) | 41, 322, 407, 562, 648 |
| NlaIII | CATG | 9 cut(s) | 107, 230, 637, 673, 1057, 1235, 1462, 1572, 1678 |
| NmeAIII | GCCGAG | 2 cut(s) | 670, 1111 |
| NmuCI | GTSAC | 2 cut(s) | 785, 1058 |
| NotI | GCGGCCGC | 1 cut(s) | 1599 |
| NspI | RCATGY | 2 cut(s) | 1462, 1572 |
| OliI | CACNNNNGTG | 1 cut(s) | 914 |
| PaeI | GCATGC | 1 cut(s) | 1572 |
| PceI | AGGCCT | 2 cut(s) | 318, 892 |
| PciI | ACATGT | 1 cut(s) | 1458 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 92, 184 |
| PfeI | GAWTC | 3 cut(s) | 35, 511, 1520 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 1716 |
| Ple19I | CGATCG | 1 cut(s) | 410 |
| PleI | GAGTC | 5 cut(s) | 77, 457, 1061, 1621, 1861 |
| PluTI | GGCGCC | 1 cut(s) | 839 |
| PpsI | GAGTC | 5 cut(s) | 77, 457, 1061, 1621, 1861 |
| PpuMI | RGGWCCY | 1 cut(s) | 742 |
| PscI | ACATGT | 1 cut(s) | 1458 |
| Psp124BI | GAGCTC | 1 cut(s) | 1281 |
| Psp5II | RGGWCCY | 1 cut(s) | 742 |
| Psp6I | CCWGG | 5 cut(s) | 595, 1062, 1152, 1242, 1795 |
| PspGI | CCWGG | 5 cut(s) | 595, 1062, 1152, 1242, 1795 |
| PspOMI | GGGCCC | 1 cut(s) | 981 |
| PspPI | GGNCC | 7 cut(s) | 403, 637, 742, 981, 982, 1297, 1891 |
| PspPPI | RGGWCCY | 1 cut(s) | 742 |
| PstI | CTGCAG | 4 cut(s) | 898, 924, 1515, 1698 |
| PsuI | RGATCY | 1 cut(s) | 41 |
| PvuI | CGATCG | 1 cut(s) | 410 |
| PvuII | CAGCTG | 1 cut(s) | 1552 |
| RsaI | GTAC | 6 cut(s) | 422, 455, 674, 1619, 1637, 1777 |
| RsaNI | GTAC | 6 cut(s) | 421, 454, 673, 1618, 1636, 1776 |
| RseI | CAYNNNNRTG | 2 cut(s) | 780, 914 |
| SacI | GAGCTC | 1 cut(s) | 1281 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 1 cut(s) | 1182 |
| Sau3AI | GATC | 5 cut(s) | 41, 322, 407, 562, 648 |
| Sau96I | GGNCC | 7 cut(s) | 403, 637, 742, 981, 982, 1297, 1891 |
| SchI | GAGTC | 5 cut(s) | 77, 457, 1061, 1622, 1861 |
| ScrFI | CCNGG | 8 cut(s) | 277, 544, 597, 614, 1064, 1154, 1244, 1797 |
| SduI | GDGCHC | 3 cut(s) | 985, 1215, 1281 |
| SfaNI | GCATC | 3 cut(s) | 952, 1363, 1736 |
| SfcI | CTRYAG | 6 cut(s) | 146, 894, 920, 1301, 1511, 1694 |
| SfoI | GGCGCC | 1 cut(s) | 837 |
| SinI | GGWCC | 4 cut(s) | 403, 637, 742, 1891 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 780, 914 |
| SmlI | CTYRAG | 1 cut(s) | 1442 |
| SmoI | CTYRAG | 1 cut(s) | 1442 |
| SphI | GCATGC | 1 cut(s) | 1572 |
| Sse9I | AATT | 3 cut(s) | 73, 655, 1112 |
| SseBI | AGGCCT | 2 cut(s) | 318, 892 |
| SspDI | GGCGCC | 1 cut(s) | 835 |
| SspMI | CTAG | 3 cut(s) | 131, 201, 248 |
| SstI | GAGCTC | 1 cut(s) | 1281 |
| StuI | AGGCCT | 2 cut(s) | 318, 892 |
| StyD4I | CCNGG | 8 cut(s) | 275, 542, 595, 612, 1062, 1152, 1242, 1795 |
| StyI | CCWWGG | 3 cut(s) | 633, 1020, 1674 |
| TaaI | ACNGT | 5 cut(s) | 641, 703, 1103, 1370, 1437 |
| TaiI | ACGT | 2 cut(s) | 12, 1218 |
| TaqI | TCGA | 6 cut(s) | 23, 321, 651, 1344, 1713, 1730 |
| TaqII | GACCGA | 3 cut(s) | 420, 1667, 1726 |
| TasI | AATT | 3 cut(s) | 73, 655, 1112 |
| TatI | WGTACW | 1 cut(s) | 1635 |
| TfiI | GAWTC | 3 cut(s) | 35, 511, 1520 |
| Tru1I | TTAA | 1 cut(s) | 1182 |
| Tru9I | TTAA | 1 cut(s) | 1182 |
| TscAI | CASTG | 4 cut(s) | 34, 123, 708, 1795 |
| TseFI | GTSAC | 2 cut(s) | 785, 1058 |
| Tsp45I | GTSAC | 2 cut(s) | 785, 1058 |
| TspDTI | ATGAA | 2 cut(s) | 243, 1248 |
| TspGWI | ACGGA | 3 cut(s) | 84, 147, 856 |
| TspRI | CASTG | 4 cut(s) | 34, 123, 708, 1795 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 1716 |
| VpaK11BI | GGWCC | 4 cut(s) | 403, 637, 742, 1891 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 737, 1514 |
| XapI | RAATTY | 2 cut(s) | 73, 1112 |
| XceI | RCATGY | 2 cut(s) | 1462, 1572 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 776, 1681 |
| XmiI | GTMKAC | 1 cut(s) | 708 |
| XspI | CTAG | 3 cut(s) | 131, 201, 248 |
| ZraI | GACGTC | 1 cut(s) | 10 |