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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 3 cut(s) | 37, 178, 190 |
| AclWI | GGATC | 2 cut(s) | 246, 265 |
| AcoI | YGGCCR | 2 cut(s) | 246, 363 |
| AcuI | CTGAAG | 1 cut(s) | 260 |
| AcyI | GRCGYC | 2 cut(s) | 14, 147 |
| AfaI | GTAC | 1 cut(s) | 182 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 70, 177, 235, 280, 361 |
| AflIII | ACRYGT | 1 cut(s) | 222 |
| AjnI | CCWGG | 2 cut(s) | 6, 27 |
| AluBI | AGCT | 4 cut(s) | 43, 160, 211, 266 |
| AluI | AGCT | 4 cut(s) | 43, 160, 211, 266 |
| Alw21I | GWGCWC | 1 cut(s) | 45 |
| AlwI | GGATC | 2 cut(s) | 246, 265 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 28 |
| AoxI | GGCC | 6 cut(s) | 61, 84, 126, 246, 352, 363 |
| ApeKI | GCWGC | 2 cut(s) | 232, 359 |
| AspS9I | GGNCC | 3 cut(s) | 61, 85, 352 |
| BanII | GRGCYC | 1 cut(s) | 45 |
| Bbv12I | GWGCWC | 1 cut(s) | 45 |
| BbvCI | CCTCAGC | 1 cut(s) | 345 |
| BbvI | GCAGC | 2 cut(s) | 219, 346 |
| BceAI | ACGGC | 1 cut(s) | 339 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 119, 153 |
| BciT130I | CCWGG | 2 cut(s) | 8, 29 |
| BfaI | CTAG | 1 cut(s) | 317 |
| BfmI | CTRYAG | 2 cut(s) | 65, 233 |
| BisI | GCNGC | 9 cut(s) | 12, 141, 233, 249, 314, 360, 363, 366, 369 |
| BlsI | GCNGC | 9 cut(s) | 13, 142, 234, 250, 315, 361, 364, 367, 370 |
| Bme1390I | CCNGG | 2 cut(s) | 8, 29 |
| BmgT120I | GGNCC | 3 cut(s) | 61, 85, 352 |
| BmiI | GGNNCC | 1 cut(s) | 353 |
| BmrFI | CCNGG | 2 cut(s) | 8, 29 |
| BmsI | GCATC | 1 cut(s) | 127 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 275, 307 |
| BpmI | CTGGAG | 1 cut(s) | 233 |
| Bpu10I | CCTNAGC | 2 cut(s) | 44, 345 |
| BsaHI | GRCGYC | 2 cut(s) | 14, 147 |
| BsaJI | CCNNGG | 3 cut(s) | 27, 151, 252 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 70, 177, 235, 280, 361 |
| BseBI | CCWGG | 2 cut(s) | 8, 29 |
| BseDI | CCNNGG | 3 cut(s) | 27, 151, 252 |
| BseGI | GGATG | 1 cut(s) | 328 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 70, 177, 235, 280, 361 |
| BseMII | CTCAG | 4 cut(s) | 58, 258, 294, 336 |
| BseX3I | CGGCCG | 1 cut(s) | 363 |
| BseXI | GCAGC | 2 cut(s) | 219, 346 |
| BseYI | CCCAGC | 1 cut(s) | 87 |
| Bsh1285I | CGRYCG | 1 cut(s) | 366 |
| BshFI | GGCC | 6 cut(s) | 63, 86, 128, 248, 354, 365 |
| BsiEI | CGRYCG | 1 cut(s) | 366 |
| BsiHKAI | GWGCWC | 1 cut(s) | 45 |
| BslFI | GGGAC | 2 cut(s) | 86, 211 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 70, 177, 235, 280, 361 |
| BsmFI | GGGAC | 2 cut(s) | 86, 211 |
| BsnI | GGCC | 6 cut(s) | 63, 86, 128, 248, 354, 365 |
| Bsp1286I | GDGCHC | 1 cut(s) | 45 |
| Bsp143I | GATC | 3 cut(s) | 238, 270, 306 |
| BspANI | GGCC | 6 cut(s) | 63, 86, 128, 248, 354, 365 |
| BspCNI | CTCAG | 4 cut(s) | 57, 259, 295, 337 |
| BspLI | GGNNCC | 1 cut(s) | 353 |
| BspMAI | CTGCAG | 1 cut(s) | 237 |
| BspPI | GGATC | 2 cut(s) | 246, 265 |
| BsrBI | CCGCTC | 3 cut(s) | 37, 178, 190 |
| BssECI | CCNNGG | 3 cut(s) | 27, 151, 252 |
| BssMI | GATC | 3 cut(s) | 238, 270, 306 |
| BssNI | GRCGYC | 2 cut(s) | 14, 147 |
| BssT1I | CCWWGG | 1 cut(s) | 252 |
| Bst2UI | CCWGG | 2 cut(s) | 8, 29 |
| Bst6I | CTCTTC | 1 cut(s) | 192 |
| BstACI | GRCGYC | 2 cut(s) | 14, 147 |
| BstC8I | GCNNGC | 3 cut(s) | 61, 158, 334 |
| BstDEI | CTNAG | 4 cut(s) | 44, 267, 303, 345 |
| BstDSI | CCRYGG | 1 cut(s) | 151 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 233 |
| BstF5I | GGATG | 1 cut(s) | 328 |
| BstKTI | GATC | 3 cut(s) | 241, 273, 309 |
| BstMBI | GATC | 3 cut(s) | 238, 270, 306 |
| BstMCI | CGRYCG | 1 cut(s) | 366 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 146, 365, 368 |
| BstNI | CCWGG | 2 cut(s) | 8, 29 |
| BstNSI | RCATGY | 1 cut(s) | 226 |
| BstSCI | CCNGG | 2 cut(s) | 6, 27 |
| BstSFI | CTRYAG | 2 cut(s) | 65, 233 |
| BstV1I | GCAGC | 2 cut(s) | 219, 346 |
| BstX2I | RGATCY | 1 cut(s) | 270 |
| BstYI | RGATCY | 1 cut(s) | 270 |
| BstZI | CGGCCG | 1 cut(s) | 363 |
| BsuRI | GGCC | 6 cut(s) | 63, 86, 128, 248, 354, 365 |
| BtgI | CCRYGG | 1 cut(s) | 151 |
| BtgZI | GCGATG | 1 cut(s) | 150 |
| BtsCI | GGATG | 1 cut(s) | 328 |
| Cac8I | GCNNGC | 3 cut(s) | 61, 158, 334 |
| CaiI | CAGNNNCTG | 1 cut(s) | 28 |
| CciNI | GCGGCCGC | 1 cut(s) | 363 |
| Cfr13I | GGNCC | 3 cut(s) | 61, 85, 352 |
| CseI | GACGC | 3 cut(s) | 3, 123, 155 |
| Csp6I | GTAC | 1 cut(s) | 181 |
| CviAII | CATG | 1 cut(s) | 223 |
| CviQI | GTAC | 1 cut(s) | 181 |
| DdeI | CTNAG | 4 cut(s) | 44, 267, 303, 345 |
| DpnI | GATC | 3 cut(s) | 240, 272, 308 |
| DpnII | GATC | 3 cut(s) | 238, 270, 306 |
| EaeI | YGGCCR | 2 cut(s) | 246, 363 |
| EagI | CGGCCG | 1 cut(s) | 363 |
| Eam1104I | CTCTTC | 1 cut(s) | 192 |
| EarI | CTCTTC | 1 cut(s) | 192 |
| Ecl136II | GAGCTC | 1 cut(s) | 43 |
| EclXI | CGGCCG | 1 cut(s) | 363 |
| Eco130I | CCWWGG | 1 cut(s) | 252 |
| Eco24I | GRGCYC | 1 cut(s) | 45 |
| Eco52I | CGGCCG | 1 cut(s) | 363 |
| Eco53kI | GAGCTC | 1 cut(s) | 43 |
| Eco57I | CTGAAG | 1 cut(s) | 260 |
| EcoICRI | GAGCTC | 1 cut(s) | 43 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 233 |
| EcoRII | CCWGG | 2 cut(s) | 6, 27 |
| EcoT14I | CCWWGG | 1 cut(s) | 252 |
| EcoT38I | GRGCYC | 1 cut(s) | 45 |
| ErhI | CCWWGG | 1 cut(s) | 252 |
| FaeI | CATG | 1 cut(s) | 226 |
| FaiI | YATR | 1 cut(s) | 224 |
| FaqI | GGGAC | 2 cut(s) | 86, 211 |
| FatI | CATG | 1 cut(s) | 222 |
| FauI | CCCGC | 3 cut(s) | 30, 52, 273 |
| Fnu4HI | GCNGC | 9 cut(s) | 12, 141, 233, 249, 314, 360, 363, 366, 369 |
| FokI | GGATG | 1 cut(s) | 335 |
| FriOI | GRGCYC | 1 cut(s) | 45 |
| Fsp4HI | GCNGC | 9 cut(s) | 12, 141, 233, 249, 314, 360, 363, 366, 369 |
| FspBI | CTAG | 1 cut(s) | 317 |
| GluI | GCNGC | 9 cut(s) | 12, 141, 233, 249, 314, 360, 363, 366, 369 |
| GsaI | CCCAGC | 1 cut(s) | 91 |
| GsuI | CTGGAG | 1 cut(s) | 233 |
| HaeIII | GGCC | 6 cut(s) | 63, 86, 128, 248, 354, 365 |
| HgaI | GACGC | 3 cut(s) | 3, 123, 155 |
| Hin1I | GRCGYC | 2 cut(s) | 14, 147 |
| Hin1II | CATG | 1 cut(s) | 226 |
| HindIII | AAGCTT | 1 cut(s) | 158 |
| HinfI | GANTC | 1 cut(s) | 284 |
| Hpy166II | GTNNAC | 1 cut(s) | 288 |
| Hpy8I | GTNNAC | 1 cut(s) | 288 |
| Hpy99I | CGWCG | 1 cut(s) | 117 |
| HpyAV | CCTTC | 2 cut(s) | 76, 284 |
| HpyCH4V | TGCA | 1 cut(s) | 235 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 146, 365, 368 |
| HpyF3I | CTNAG | 4 cut(s) | 44, 267, 303, 345 |
| Hsp92I | GRCGYC | 2 cut(s) | 14, 147 |
| Hsp92II | CATG | 1 cut(s) | 226 |
| Kzo9I | GATC | 3 cut(s) | 238, 270, 306 |
| LmnI | GCTCC | 3 cut(s) | 40, 187, 214 |
| Lsp1109I | GCAGC | 2 cut(s) | 219, 346 |
| LweI | GCATC | 1 cut(s) | 127 |
| MaeI | CTAG | 1 cut(s) | 317 |
| MalI | GATC | 3 cut(s) | 240, 272, 308 |
| MbiI | CCGCTC | 3 cut(s) | 37, 178, 190 |
| MboI | GATC | 3 cut(s) | 238, 270, 306 |
| MboII | GAAGA | 2 cut(s) | 209, 271 |
| MflI | RGATCY | 1 cut(s) | 270 |
| MhlI | GDGCHC | 1 cut(s) | 45 |
| MlyI | GAGTC | 1 cut(s) | 293 |
| MnlI | CCTC | 6 cut(s) | 43, 63, 301, 313, 334, 340 |
| MseI | TTAA | 1 cut(s) | 162 |
| MspA1I | CMGCKG | 2 cut(s) | 280, 371 |
| MspR9I | CCNGG | 2 cut(s) | 8, 29 |
| MvaI | CCWGG | 2 cut(s) | 8, 29 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 146, 365, 368 |
| NdeII | GATC | 3 cut(s) | 238, 270, 306 |
| NlaIII | CATG | 1 cut(s) | 226 |
| NlaIV | GGNNCC | 1 cut(s) | 353 |
| NotI | GCGGCCGC | 1 cut(s) | 363 |
| NspI | RCATGY | 1 cut(s) | 226 |
| PciI | ACATGT | 1 cut(s) | 222 |
| PkrI | GCNGC | 9 cut(s) | 13, 142, 234, 250, 315, 361, 364, 367, 370 |
| PleI | GAGTC | 1 cut(s) | 292 |
| PpsI | GAGTC | 1 cut(s) | 292 |
| PscI | ACATGT | 1 cut(s) | 222 |
| Psp124BI | GAGCTC | 1 cut(s) | 45 |
| Psp6I | CCWGG | 2 cut(s) | 6, 27 |
| PspFI | CCCAGC | 1 cut(s) | 87 |
| PspGI | CCWGG | 2 cut(s) | 6, 27 |
| PspN4I | GGNNCC | 1 cut(s) | 353 |
| PspPI | GGNCC | 3 cut(s) | 61, 85, 352 |
| PstI | CTGCAG | 1 cut(s) | 237 |
| PstNI | CAGNNNCTG | 1 cut(s) | 28 |
| PsuI | RGATCY | 1 cut(s) | 270 |
| RsaI | GTAC | 1 cut(s) | 182 |
| RsaNI | GTAC | 1 cut(s) | 181 |
| SacI | GAGCTC | 1 cut(s) | 45 |
| SaqAI | TTAA | 1 cut(s) | 162 |
| SatI | GCNGC | 9 cut(s) | 12, 141, 233, 249, 314, 360, 363, 366, 369 |
| Sau3AI | GATC | 3 cut(s) | 238, 270, 306 |
| Sau96I | GGNCC | 3 cut(s) | 61, 85, 352 |
| SchI | GAGTC | 1 cut(s) | 293 |
| ScrFI | CCNGG | 2 cut(s) | 8, 29 |
| SduI | GDGCHC | 1 cut(s) | 45 |
| SetI | ASST | 6 cut(s) | 45, 162, 213, 246, 268, 293 |
| SfaNI | GCATC | 1 cut(s) | 127 |
| SfcI | CTRYAG | 2 cut(s) | 65, 233 |
| SspMI | CTAG | 1 cut(s) | 317 |
| SstI | GAGCTC | 1 cut(s) | 45 |
| StyD4I | CCNGG | 2 cut(s) | 6, 27 |
| StyI | CCWWGG | 1 cut(s) | 252 |
| TaqI | TCGA | 1 cut(s) | 108 |
| TauI | GCSGC | 7 cut(s) | 14, 143, 251, 316, 365, 368, 371 |
| Tru1I | TTAA | 1 cut(s) | 162 |
| Tru9I | TTAA | 1 cut(s) | 162 |
| TseI | GCWGC | 2 cut(s) | 232, 359 |
| TspDTI | ATGAA | 1 cut(s) | 339 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 233 |
| XceI | RCATGY | 1 cut(s) | 226 |
| XspI | CTAG | 1 cut(s) | 317 |