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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| Acc36I | ACCTGC | 1 cut(s) | 540 |
| Acc65I | GGTACC | 1 cut(s) | 335 |
| AccB1I | GGYRCC | 9 cut(s) | 263, 335, 523, 1010, 1027, 1045, 1614, 1868, 1930 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 588, 1914 |
| AccBSI | CCGCTC | 3 cut(s) | 1471, 1612, 2028 |
| AccI | GTMKAC | 3 cut(s) | 314, 767, 1370 |
| AccIII | TCCGGA | 2 cut(s) | 38, 190 |
| AclWI | GGATC | 5 cut(s) | 49, 532, 1108, 1121, 1699 |
| AcoI | YGGCCR | 2 cut(s) | 3, 2008 |
| AcsI | RAATTY | 2 cut(s) | 73, 2051 |
| AcuI | CTGAAG | 6 cut(s) | 66, 410, 858, 1103, 1251, 1694 |
| AcyI | GRCGYC | 7 cut(s) | 9, 264, 903, 1011, 1028, 1046, 1448 |
| AdeI | CACNNNGTG | 1 cut(s) | 663 |
| AfaI | GTAC | 4 cut(s) | 337, 1835, 1941, 1975 |
| AflIII | ACRYGT | 4 cut(s) | 317, 585, 692, 1656 |
| AgsI | TTSAA | 4 cut(s) | 456, 817, 1811, 2018 |
| AjiI | CACGTC | 2 cut(s) | 318, 1414 |
| AleI | CACNNNNGTG | 1 cut(s) | 1326 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1296, 1328 |
| Alw21I | GWGCWC | 1 cut(s) | 486 |
| Alw26I | GTCTC | 3 cut(s) | 656, 773, 1048 |
| Alw44I | GTGCAC | 1 cut(s) | 482 |
| AlwI | GGATC | 5 cut(s) | 49, 532, 1108, 1121, 1699 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1462 |
| Ama87I | CYCGRG | 3 cut(s) | 1184, 1217, 2029 |
| Aor13HI | TCCGGA | 2 cut(s) | 38, 190 |
| ApaI | GGGCCC | 1 cut(s) | 1183 |
| ApaLI | GTGCAC | 1 cut(s) | 482 |
| ApoI | RAATTY | 2 cut(s) | 73, 2051 |
| Asp718I | GGTACC | 1 cut(s) | 335 |
| AspS9I | GGNCC | 8 cut(s) | 469, 829, 1005, 1179, 1180, 1519, 1672, 2068 |
| AsuC2I | CCSGG | 5 cut(s) | 411, 661, 789, 1177, 1676 |
| AsuHPI | GGTGA | 8 cut(s) | 430, 649, 1165, 1313, 1313, 1690, 1769, 2060 |
| AvaI | CYCGRG | 3 cut(s) | 1184, 1217, 2029 |
| AvaII | GGWCC | 4 cut(s) | 469, 829, 1005, 1672 |
| BaeGI | GKGCMC | 4 cut(s) | 486, 581, 1183, 1413 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 327, 360 |
| BalI | TGGCCA | 1 cut(s) | 2010 |
| BamHI | GGATCC | 1 cut(s) | 1113 |
| BanI | GGYRCC | 9 cut(s) | 263, 335, 523, 1010, 1027, 1045, 1614, 1868, 1930 |
| BanII | GRGCYC | 4 cut(s) | 926, 1183, 1428, 2026 |
| BauI | CACGAG | 2 cut(s) | 485, 1430 |
| Bbv12I | GWGCWC | 1 cut(s) | 486 |
| BbvCI | CCTCAGC | 2 cut(s) | 1478, 1779 |
| BccI | CCATC | 4 cut(s) | 886, 934, 1140, 1954 |
| BceAI | ACGGC | 7 cut(s) | 362, 745, 1073, 1361, 1582, 1773, 1992 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1553, 1587, 1908, 1942 |
| BciVI | GTATCC | 1 cut(s) | 298 |
| BcnI | CCSGG | 5 cut(s) | 411, 661, 789, 1177, 1676 |
| BcoDI | GTCTC | 3 cut(s) | 656, 773, 1048 |
| BfaI | CTAG | 2 cut(s) | 131, 248 |
| BfmI | CTRYAG | 4 cut(s) | 146, 533, 1239, 1892 |
| BfoI | RGCGCY | 8 cut(s) | 63, 247, 267, 608, 920, 1014, 1031, 1049 |
| BfuAI | ACCTGC | 1 cut(s) | 540 |
| BfuI | GTATCC | 1 cut(s) | 298 |
| BlpI | GCTNAGC | 1 cut(s) | 920 |
| Bme18I | GGWCC | 4 cut(s) | 469, 829, 1005, 1672 |
| BmeT110I | CYCGRG | 3 cut(s) | 1184, 1217, 2029 |
| BmgBI | CACGTC | 2 cut(s) | 318, 1414 |
| BmgT120I | GGNCC | 8 cut(s) | 469, 829, 1005, 1179, 1180, 1519, 1672, 2068 |
| BmrI | ACTGGG | 2 cut(s) | 1346, 1924 |
| BmsI | GCATC | 4 cut(s) | 567, 1561, 1570, 1878 |
| BmuI | ACTGGG | 2 cut(s) | 1346, 1924 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1376 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 498, 530 |
| BpmI | CTGGAG | 7 cut(s) | 875, 1129, 1373, 1484, 1640, 1772, 1793 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1478, 1779, 1873 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 920 |
| BpuMI | CCSGG | 5 cut(s) | 411, 661, 789, 1177, 1676 |
| BsaHI | GRCGYC | 7 cut(s) | 9, 264, 903, 1011, 1028, 1046, 1448 |
| BsaI | GGTCTC | 1 cut(s) | 773 |
| BsaWI | WCCGGW | 3 cut(s) | 38, 190, 402 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 848, 878, 1301, 1331 |
| Bse118I | RCCGGY | 7 cut(s) | 384, 463, 752, 1007, 1048, 1865, 1933 |
| Bse1I | ACTGG | 5 cut(s) | 645, 1146, 1341, 1919, 1971 |
| Bse3DI | GCAATG | 1 cut(s) | 831 |
| BseAI | TCCGGA | 2 cut(s) | 38, 190 |
| BseGI | GGATG | 1 cut(s) | 1946 |
| BseMI | GCAATG | 1 cut(s) | 831 |
| BseMII | CTCAG | 3 cut(s) | 911, 1469, 1770 |
| BseNI | ACTGG | 5 cut(s) | 645, 1146, 1341, 1919, 1971 |
| BseRI | GAGGAG | 4 cut(s) | 254, 458, 644, 1172 |
| BseSI | GKGCMC | 4 cut(s) | 486, 581, 1183, 1413 |
| BsgI | GTGCAG | 2 cut(s) | 126, 905 |
| Bsh1285I | CGRYCG | 4 cut(s) | 1107, 1370, 1374, 1938 |
| BshNI | GGYRCC | 9 cut(s) | 263, 335, 523, 1010, 1027, 1045, 1614, 1868, 1930 |
| BsiEI | CGRYCG | 4 cut(s) | 1107, 1370, 1374, 1938 |
| BsiHKAI | GWGCWC | 1 cut(s) | 486 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1184, 1217, 2029 |
| BslFI | GGGAC | 4 cut(s) | 1018, 1520, 1645, 1685 |
| BsmAI | GTCTC | 3 cut(s) | 656, 773, 1048 |
| BsmBI | CGTCTC | 2 cut(s) | 656, 1048 |
| BsmFI | GGGAC | 4 cut(s) | 1018, 1520, 1645, 1685 |
| Bso31I | GGTCTC | 1 cut(s) | 773 |
| BsoBI | CYCGRG | 3 cut(s) | 1184, 1217, 2029 |
| Bsp120I | GGGCCC | 1 cut(s) | 1179 |
| Bsp1286I | GDGCHC | 7 cut(s) | 486, 581, 926, 1183, 1413, 1428, 2026 |
| Bsp13I | TCCGGA | 2 cut(s) | 38, 190 |
| Bsp143I | GATC | 6 cut(s) | 41, 537, 1104, 1113, 1704, 1740 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 920 |
| BspCNI | CTCAG | 3 cut(s) | 912, 1470, 1771 |
| BspEI | TCCGGA | 2 cut(s) | 38, 190 |
| BspMAI | CTGCAG | 2 cut(s) | 537, 1896 |
| BspMI | ACCTGC | 1 cut(s) | 540 |
| BspPI | GGATC | 5 cut(s) | 49, 532, 1108, 1121, 1699 |
| BspT107I | GGYRCC | 9 cut(s) | 263, 335, 523, 1010, 1027, 1045, 1614, 1868, 1930 |
| BspTNI | GGTCTC | 1 cut(s) | 773 |
| BsrBI | CCGCTC | 3 cut(s) | 1471, 1612, 2028 |
| BsrDI | GCAATG | 1 cut(s) | 831 |
| BsrFI | RCCGGY | 7 cut(s) | 384, 463, 752, 1007, 1048, 1865, 1933 |
| BsrI | ACTGG | 5 cut(s) | 645, 1146, 1341, 1919, 1971 |
| BssAI | RCCGGY | 7 cut(s) | 384, 463, 752, 1007, 1048, 1865, 1933 |
| BssMI | GATC | 6 cut(s) | 41, 537, 1104, 1113, 1704, 1740 |
| BssNAI | GTATAC | 1 cut(s) | 768 |
| BssNI | GRCGYC | 7 cut(s) | 9, 264, 903, 1011, 1028, 1046, 1448 |
| BssSI | CACGAG | 2 cut(s) | 485, 1430 |
| BssT1I | CCWWGG | 2 cut(s) | 1641, 1950 |
| Bst1107I | GTATAC | 1 cut(s) | 768 |
| Bst2BI | CACGAG | 2 cut(s) | 485, 1430 |
| Bst4CI | ACNGT | 7 cut(s) | 335, 439, 481, 833, 1081, 1301, 1635 |
| Bst6I | CTCTTC | 1 cut(s) | 1149 |
| BstACI | GRCGYC | 7 cut(s) | 9, 264, 903, 1011, 1028, 1046, 1448 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 732 |
| BstDEI | CTNAG | 5 cut(s) | 292, 920, 1478, 1779, 1873 |
| BstDSI | CCRYGG | 3 cut(s) | 939, 1014, 1031 |
| BstEII | GGTNACC | 2 cut(s) | 1171, 1798 |
| BstF5I | GGATG | 1 cut(s) | 1946 |
| BstH2I | RGCGCY | 8 cut(s) | 63, 247, 267, 608, 920, 1014, 1031, 1049 |
| BstKTI | GATC | 6 cut(s) | 44, 540, 1107, 1116, 1707, 1743 |
| BstMAI | GTCTC | 3 cut(s) | 656, 773, 1048 |
| BstMBI | GATC | 6 cut(s) | 41, 537, 1104, 1113, 1704, 1740 |
| BstMCI | CGRYCG | 4 cut(s) | 1107, 1370, 1374, 1938 |
| BstNSI | RCATGY | 3 cut(s) | 589, 730, 1660 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1376 |
| BstPI | GGTNACC | 2 cut(s) | 1171, 1798 |
| BstSFI | CTRYAG | 4 cut(s) | 146, 533, 1239, 1892 |
| BstSLI | GKGCMC | 4 cut(s) | 486, 581, 1183, 1413 |
| BstX2I | RGATCY | 4 cut(s) | 41, 537, 1113, 1704 |
| BstYI | RGATCY | 4 cut(s) | 41, 537, 1113, 1704 |
| BstZ17I | GTATAC | 1 cut(s) | 768 |
| BsuI | GTATCC | 1 cut(s) | 298 |
| BtgI | CCRYGG | 3 cut(s) | 939, 1014, 1031 |
| BtgZI | GCGATG | 3 cut(s) | 544, 990, 1584 |
| BtrI | CACGTC | 2 cut(s) | 318, 1414 |
| BtsCI | GGATG | 1 cut(s) | 1946 |
| BtsI | GCAGTG | 4 cut(s) | 34, 116, 219, 1983 |
| BtsIMutI | CAGTG | 7 cut(s) | 34, 116, 219, 486, 1153, 1844, 1983 |
| BveI | ACCTGC | 1 cut(s) | 540 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1462 |
| Cfr10I | RCCGGY | 7 cut(s) | 384, 463, 752, 1007, 1048, 1865, 1933 |
| Cfr13I | GGNCC | 8 cut(s) | 469, 829, 1005, 1179, 1180, 1519, 1672, 2068 |
| Cfr42I | CCGCGG | 2 cut(s) | 1017, 1034 |
| CseI | GACGC | 7 cut(s) | 171, 176, 416, 730, 818, 911, 1437 |
| Csp6I | GTAC | 4 cut(s) | 336, 1834, 1940, 1974 |
| CviAII | CATG | 5 cut(s) | 236, 586, 727, 952, 1657 |
| CviQI | GTAC | 4 cut(s) | 336, 1834, 1940, 1974 |
| DdeI | CTNAG | 5 cut(s) | 292, 920, 1478, 1779, 1873 |
| DinI | GGCGCC | 4 cut(s) | 265, 1012, 1029, 1047 |
| DpnI | GATC | 6 cut(s) | 43, 539, 1106, 1115, 1706, 1742 |
| DpnII | GATC | 6 cut(s) | 41, 537, 1104, 1113, 1704, 1740 |
| DraIII | CACNNNGTG | 1 cut(s) | 663 |
| EaeI | YGGCCR | 2 cut(s) | 3, 2008 |
| Eam1104I | CTCTTC | 1 cut(s) | 1149 |
| EarI | CTCTTC | 1 cut(s) | 1149 |
| EciI | GGCGGA | 6 cut(s) | 420, 482, 1203, 1661, 1844, 1950 |
| Eco130I | CCWWGG | 2 cut(s) | 1641, 1950 |
| Eco24I | GRGCYC | 4 cut(s) | 926, 1183, 1428, 2026 |
| Eco31I | GGTCTC | 1 cut(s) | 773 |
| Eco47I | GGWCC | 4 cut(s) | 469, 829, 1005, 1672 |
| Eco57I | CTGAAG | 6 cut(s) | 66, 410, 858, 1103, 1251, 1694 |
| Eco88I | CYCGRG | 3 cut(s) | 1184, 1217, 2029 |
| Eco91I | GGTNACC | 2 cut(s) | 1171, 1798 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1179, 1180 |
| EcoO65I | GGTNACC | 2 cut(s) | 1171, 1798 |
| EcoRI | GAATTC | 1 cut(s) | 2051 |
| EcoT14I | CCWWGG | 2 cut(s) | 1641, 1950 |
| EcoT38I | GRGCYC | 4 cut(s) | 926, 1183, 1428, 2026 |
| EgeI | GGCGCC | 4 cut(s) | 265, 1012, 1029, 1047 |
| EheI | GGCGCC | 4 cut(s) | 265, 1012, 1029, 1047 |
| ErhI | CCWWGG | 2 cut(s) | 1641, 1950 |
| Esp3I | CGTCTC | 2 cut(s) | 656, 1048 |
| FaeI | CATG | 5 cut(s) | 239, 589, 730, 955, 1660 |
| FaqI | GGGAC | 4 cut(s) | 1018, 1520, 1645, 1685 |
| FatI | CATG | 5 cut(s) | 235, 585, 726, 951, 1656 |
| FblI | GTMKAC | 3 cut(s) | 314, 767, 1370 |
| FokI | GGATG | 1 cut(s) | 1933 |
| FriOI | GRGCYC | 4 cut(s) | 926, 1183, 1428, 2026 |
| FspBI | CTAG | 2 cut(s) | 131, 248 |
| GsuI | CTGGAG | 7 cut(s) | 875, 1129, 1373, 1484, 1640, 1772, 1793 |
| HaeII | RGCGCY | 8 cut(s) | 63, 247, 267, 608, 920, 1014, 1031, 1049 |
| HgaI | GACGC | 7 cut(s) | 171, 176, 416, 730, 818, 911, 1437 |
| Hin1I | GRCGYC | 7 cut(s) | 9, 264, 903, 1011, 1028, 1046, 1448 |
| Hin1II | CATG | 5 cut(s) | 239, 589, 730, 955, 1660 |
| HincII | GTYRAC | 4 cut(s) | 315, 346, 382, 1371 |
| HindII | GTYRAC | 4 cut(s) | 315, 346, 382, 1371 |
| HindIII | AAGCTT | 2 cut(s) | 450, 1923 |
| HinfI | GANTC | 8 cut(s) | 35, 83, 311, 1142, 1265, 1385, 1718, 1811 |
| HphI | GGTGA | 8 cut(s) | 430, 649, 1165, 1313, 1313, 1690, 1769, 2060 |
| Hpy166II | GTNNAC | 8 cut(s) | 315, 346, 382, 484, 768, 901, 1304, 1371 |
| Hpy188I | TCNGA | 2 cut(s) | 46, 931 |
| Hpy188III | TCNNGA | 5 cut(s) | 39, 191, 817, 1352, 1501 |
| Hpy8I | GTNNAC | 8 cut(s) | 315, 346, 382, 484, 768, 901, 1304, 1371 |
| Hpy99I | CGWCG | 9 cut(s) | 11, 187, 319, 439, 812, 1301, 1418, 1551, 1568 |
| HpyAV | CCTTC | 7 cut(s) | 1030, 1127, 1510, 1681, 1718, 1855, 2012 |
| HpyCH4III | ACNGT | 7 cut(s) | 335, 439, 481, 833, 1081, 1301, 1635 |
| HpyCH4IV | ACGT | 6 cut(s) | 9, 91, 317, 1413, 1549, 1599 |
| HpyCH4V | TGCA | 7 cut(s) | 107, 235, 484, 535, 726, 886, 1894 |
| HpyF3I | CTNAG | 5 cut(s) | 292, 920, 1478, 1779, 1873 |
| HpySE526I | ACGT | 6 cut(s) | 9, 91, 317, 1413, 1549, 1599 |
| Hsp92I | GRCGYC | 7 cut(s) | 9, 264, 903, 1011, 1028, 1046, 1448 |
| Hsp92II | CATG | 5 cut(s) | 239, 589, 730, 955, 1660 |
| KasI | GGCGCC | 4 cut(s) | 263, 1010, 1027, 1045 |
| Kpn2I | TCCGGA | 2 cut(s) | 38, 190 |
| KpnI | GGTACC | 1 cut(s) | 339 |
| KroI | GCCGGC | 2 cut(s) | 463, 1048 |
| KroNI | GCCGGC | 2 cut(s) | 465, 1050 |
| KspI | CCGCGG | 2 cut(s) | 1017, 1034 |
| Kzo9I | GATC | 6 cut(s) | 41, 537, 1104, 1113, 1704, 1740 |
| LweI | GCATC | 4 cut(s) | 567, 1561, 1570, 1878 |
| MaeI | CTAG | 2 cut(s) | 131, 248 |
| MaeII | ACGT | 6 cut(s) | 9, 91, 317, 1413, 1549, 1599 |
| MaeIII | GTNAC | 6 cut(s) | 87, 508, 1099, 1171, 1678, 1798 |
| MalI | GATC | 6 cut(s) | 43, 539, 1106, 1115, 1706, 1742 |
| MbiI | CCGCTC | 3 cut(s) | 1471, 1612, 2028 |
| MboI | GATC | 6 cut(s) | 41, 537, 1104, 1113, 1704, 1740 |
| MboII | GAAGA | 5 cut(s) | 176, 901, 1166, 1207, 1705 |
| MflI | RGATCY | 4 cut(s) | 41, 537, 1113, 1704 |
| MhlI | GDGCHC | 7 cut(s) | 486, 581, 926, 1183, 1413, 1428, 2026 |
| MlsI | TGGCCA | 1 cut(s) | 2010 |
| MluCI | AATT | 3 cut(s) | 73, 847, 2051 |
| MluI | ACGCGT | 1 cut(s) | 692 |
| MluNI | TGGCCA | 1 cut(s) | 2010 |
| Mly113I | GGCGCC | 4 cut(s) | 264, 1011, 1028, 1046 |
| MlyI | GAGTC | 4 cut(s) | 77, 320, 1136, 1727 |
| Mox20I | TGGCCA | 1 cut(s) | 2010 |
| MreI | CGCCGGCG | 1 cut(s) | 1048 |
| MroI | TCCGGA | 2 cut(s) | 38, 190 |
| MroNI | GCCGGC | 2 cut(s) | 463, 1048 |
| MscI | TGGCCA | 1 cut(s) | 2010 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1326 |
| Msp20I | TGGCCA | 1 cut(s) | 2010 |
| NaeI | GCCGGC | 2 cut(s) | 465, 1050 |
| NarI | GGCGCC | 4 cut(s) | 264, 1011, 1028, 1046 |
| NciI | CCSGG | 5 cut(s) | 411, 661, 789, 1177, 1676 |
| NdeII | GATC | 6 cut(s) | 41, 537, 1104, 1113, 1704, 1740 |
| NgoMIV | GCCGGC | 2 cut(s) | 463, 1048 |
| NlaIII | CATG | 5 cut(s) | 239, 589, 730, 955, 1660 |
| NmeAIII | GCCGAG | 1 cut(s) | 1309 |
| NmuCI | GTSAC | 3 cut(s) | 508, 1171, 1678 |
| NspI | RCATGY | 3 cut(s) | 589, 730, 1660 |
| OliI | CACNNNNGTG | 1 cut(s) | 1326 |
| PaeI | GCATGC | 1 cut(s) | 730 |
| PaeR7I | CTCGAG | 1 cut(s) | 1184 |
| PciI | ACATGT | 2 cut(s) | 585, 1656 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 92, 184, 987 |
| PdiI | GCCGGC | 2 cut(s) | 465, 1050 |
| PfeI | GAWTC | 4 cut(s) | 35, 1265, 1385, 1811 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 588, 1914 |
| PfoI | TCCNGGA | 1 cut(s) | 852 |
| Ple19I | CGATCG | 1 cut(s) | 1107 |
| PleI | GAGTC | 4 cut(s) | 77, 319, 1136, 1726 |
| PluTI | GGCGCC | 4 cut(s) | 267, 1014, 1031, 1049 |
| PpsI | GAGTC | 4 cut(s) | 77, 319, 1136, 1726 |
| PscI | ACATGT | 2 cut(s) | 585, 1656 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1376 |
| PspEI | GGTNACC | 2 cut(s) | 1171, 1798 |
| PspOMI | GGGCCC | 1 cut(s) | 1179 |
| PspPI | GGNCC | 8 cut(s) | 469, 829, 1005, 1179, 1180, 1519, 1672, 2068 |
| PspXI | VCTCGAGB | 1 cut(s) | 1184 |
| PstI | CTGCAG | 2 cut(s) | 537, 1896 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1462 |
| PsuI | RGATCY | 4 cut(s) | 41, 537, 1113, 1704 |
| PvuI | CGATCG | 1 cut(s) | 1107 |
| RsaI | GTAC | 4 cut(s) | 337, 1835, 1941, 1975 |
| RsaNI | GTAC | 4 cut(s) | 336, 1834, 1940, 1974 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1326 |
| SacII | CCGCGG | 2 cut(s) | 1017, 1034 |
| SalI | GTCGAC | 2 cut(s) | 313, 1369 |
| Sau3AI | GATC | 6 cut(s) | 41, 537, 1104, 1113, 1704, 1740 |
| Sau96I | GGNCC | 8 cut(s) | 469, 829, 1005, 1179, 1180, 1519, 1672, 2068 |
| SchI | GAGTC | 4 cut(s) | 77, 320, 1136, 1727 |
| SduI | GDGCHC | 7 cut(s) | 486, 581, 926, 1183, 1413, 1428, 2026 |
| SfaNI | GCATC | 4 cut(s) | 567, 1561, 1570, 1878 |
| SfcI | CTRYAG | 4 cut(s) | 146, 533, 1239, 1892 |
| SfoI | GGCGCC | 4 cut(s) | 265, 1012, 1029, 1047 |
| Sfr274I | CTCGAG | 1 cut(s) | 1184 |
| Sfr303I | CCGCGG | 2 cut(s) | 1017, 1034 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1048 |
| SgrBI | CCGCGG | 2 cut(s) | 1017, 1034 |
| SinI | GGWCC | 4 cut(s) | 469, 829, 1005, 1672 |
| SlaI | CTCGAG | 1 cut(s) | 1184 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1326 |
| SmlI | CTYRAG | 1 cut(s) | 1184 |
| SmoI | CTYRAG | 1 cut(s) | 1184 |
| SphI | GCATGC | 1 cut(s) | 730 |
| Sse9I | AATT | 3 cut(s) | 73, 847, 2051 |
| SspDI | GGCGCC | 4 cut(s) | 263, 1010, 1027, 1045 |
| SspI | AATATT | 1 cut(s) | 495 |
| SspMI | CTAG | 2 cut(s) | 131, 248 |
| StyI | CCWWGG | 2 cut(s) | 1641, 1950 |
| TaaI | ACNGT | 7 cut(s) | 335, 439, 481, 833, 1081, 1301, 1635 |
| TaiI | ACGT | 6 cut(s) | 12, 94, 320, 1416, 1552, 1602 |
| TaqI | TCGA | 8 cut(s) | 23, 138, 314, 327, 1185, 1193, 1370, 1542 |
| TaqII | GACCGA | 2 cut(s) | 1356, 1865 |
| TasI | AATT | 3 cut(s) | 73, 847, 2051 |
| TatI | WGTACW | 1 cut(s) | 1833 |
| TfiI | GAWTC | 4 cut(s) | 35, 1265, 1385, 1811 |
| TscAI | CASTG | 7 cut(s) | 34, 123, 226, 486, 1153, 1851, 1990 |
| TseFI | GTSAC | 3 cut(s) | 508, 1171, 1678 |
| Tsp45I | GTSAC | 3 cut(s) | 508, 1171, 1678 |
| TspDTI | ATGAA | 2 cut(s) | 1257, 1644 |
| TspGWI | ACGGA | 3 cut(s) | 84, 638, 1106 |
| TspRI | CASTG | 7 cut(s) | 34, 123, 226, 486, 1153, 1851, 1990 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 588, 1914 |
| VneI | GTGCAC | 1 cut(s) | 482 |
| VpaK11BI | GGWCC | 4 cut(s) | 469, 829, 1005, 1672 |
| XapI | RAATTY | 2 cut(s) | 73, 2051 |
| XceI | RCATGY | 3 cut(s) | 589, 730, 1660 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 968, 1459 |
| XhoI | CTCGAG | 1 cut(s) | 1184 |
| XmiI | GTMKAC | 3 cut(s) | 314, 767, 1370 |
| XspI | CTAG | 2 cut(s) | 131, 248 |
| ZraI | GACGTC | 1 cut(s) | 10 |