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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 685 |
| AatII | GACGTC | 1 cut(s) | 768 |
| AbsI | CCTCGAGG | 1 cut(s) | 703 |
| Acc36I | ACCTGC | 2 cut(s) | 384, 685 |
| Acc65I | GGTACC | 1 cut(s) | 256 |
| AccB1I | GGYRCC | 2 cut(s) | 151, 256 |
| AccBSI | CCGCTC | 1 cut(s) | 882 |
| AccII | CGCG | 4 cut(s) | 435, 498, 683, 794 |
| AcoI | YGGCCR | 1 cut(s) | 855 |
| AcsI | RAATTY | 1 cut(s) | 911 |
| AcyI | GRCGYC | 2 cut(s) | 152, 765 |
| AfaI | GTAC | 2 cut(s) | 258, 530 |
| AfeI | AGCGCT | 1 cut(s) | 21 |
| AflII | CTTAAG | 1 cut(s) | 133 |
| AgeI | ACCGGT | 1 cut(s) | 398 |
| AgsI | TTSAA | 1 cut(s) | 946 |
| AjnI | CCWGG | 1 cut(s) | 144 |
| AluBI | AGCT | 2 cut(s) | 464, 961 |
| AluI | AGCT | 2 cut(s) | 464, 961 |
| Alw26I | GTCTC | 3 cut(s) | 590, 791, 977 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 670 |
| Ama87I | CYCGRG | 2 cut(s) | 220, 703 |
| Aor51HI | AGCGCT | 1 cut(s) | 21 |
| AoxI | GGCC | 4 cut(s) | 56, 707, 732, 855 |
| ApeKI | GCWGC | 5 cut(s) | 117, 336, 357, 688, 958 |
| ApoI | RAATTY | 1 cut(s) | 911 |
| AsiGI | ACCGGT | 1 cut(s) | 398 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 75 |
| Asp718I | GGTACC | 1 cut(s) | 256 |
| AspLEI | GCGC | 6 cut(s) | 22, 154, 437, 500, 641, 902 |
| AspS9I | GGNCC | 3 cut(s) | 56, 493, 732 |
| AsuHPI | GGTGA | 5 cut(s) | 388, 595, 706, 709, 859 |
| AsuNHI | GCTAGC | 1 cut(s) | 464 |
| AvaI | CYCGRG | 2 cut(s) | 220, 703 |
| AvaII | GGWCC | 1 cut(s) | 493 |
| BanI | GGYRCC | 2 cut(s) | 151, 256 |
| BanII | GRGCYC | 1 cut(s) | 811 |
| BbsI | GAAGAC | 2 cut(s) | 383, 795 |
| BbvI | GCAGC | 5 cut(s) | 129, 323, 344, 675, 970 |
| BccI | CCATC | 2 cut(s) | 638, 809 |
| BceAI | ACGGC | 1 cut(s) | 719 |
| BciT130I | CCWGG | 1 cut(s) | 146 |
| BcoDI | GTCTC | 3 cut(s) | 590, 791, 977 |
| BfaI | CTAG | 4 cut(s) | 465, 887, 926, 962 |
| BfoI | RGCGCY | 3 cut(s) | 23, 155, 642 |
| BfrI | CTTAAG | 1 cut(s) | 133 |
| BfuAI | ACCTGC | 2 cut(s) | 384, 685 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 731 |
| BlpI | GCTNAGC | 1 cut(s) | 549 |
| Bme1390I | CCNGG | 1 cut(s) | 146 |
| Bme18I | GGWCC | 1 cut(s) | 493 |
| BmeT110I | CYCGRG | 2 cut(s) | 220, 703 |
| BmgT120I | GGNCC | 3 cut(s) | 56, 493, 732 |
| BmiI | GGNNCC | 3 cut(s) | 153, 202, 258 |
| BmrFI | CCNGG | 1 cut(s) | 146 |
| BmsI | GCATC | 1 cut(s) | 606 |
| BmtI | GCTAGC | 1 cut(s) | 468 |
| BoxI | GACNNNNGTC | 1 cut(s) | 387 |
| BpiI | GAAGAC | 2 cut(s) | 383, 795 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 549 |
| BpuEI | CTTGAG | 1 cut(s) | 344 |
| BsaHI | GRCGYC | 2 cut(s) | 152, 765 |
| BsaI | GGTCTC | 1 cut(s) | 791 |
| BsaJI | CCNNGG | 7 cut(s) | 63, 109, 145, 191, 219, 489, 603 |
| BsaWI | WCCGGW | 1 cut(s) | 398 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 512, 542 |
| Bse118I | RCCGGY | 1 cut(s) | 398 |
| Bse1I | ACTGG | 3 cut(s) | 589, 675, 720 |
| BseBI | CCWGG | 1 cut(s) | 146 |
| BseDI | CCNNGG | 7 cut(s) | 63, 109, 145, 191, 219, 489, 603 |
| BseGI | GGATG | 3 cut(s) | 53, 650, 985 |
| BseMII | CTCAG | 5 cut(s) | 270, 563, 584, 649, 689 |
| BseNI | ACTGG | 3 cut(s) | 589, 675, 720 |
| BseXI | GCAGC | 5 cut(s) | 129, 323, 344, 675, 970 |
| BseYI | CCCAGC | 1 cut(s) | 536 |
| BsgI | GTGCAG | 1 cut(s) | 893 |
| Bsh1236I | CGCG | 4 cut(s) | 435, 498, 683, 794 |
| BshFI | GGCC | 4 cut(s) | 58, 709, 734, 857 |
| BshNI | GGYRCC | 2 cut(s) | 151, 256 |
| BshTI | ACCGGT | 1 cut(s) | 398 |
| BsiHKCI | CYCGRG | 2 cut(s) | 220, 703 |
| BsiSI | CCGG | 1 cut(s) | 399 |
| BslFI | GGGAC | 2 cut(s) | 172, 256 |
| BsmAI | GTCTC | 3 cut(s) | 590, 791, 977 |
| BsmFI | GGGAC | 2 cut(s) | 172, 256 |
| BsnI | GGCC | 4 cut(s) | 58, 709, 734, 857 |
| Bso31I | GGTCTC | 1 cut(s) | 791 |
| BsoBI | CYCGRG | 2 cut(s) | 220, 703 |
| Bsp1286I | GDGCHC | 1 cut(s) | 811 |
| Bsp143I | GATC | 2 cut(s) | 418, 678 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 549 |
| Bsp19I | CCATGG | 1 cut(s) | 489 |
| BspANI | GGCC | 4 cut(s) | 58, 709, 734, 857 |
| BspCNI | CTCAG | 5 cut(s) | 271, 562, 583, 648, 688 |
| BspFNI | CGCG | 4 cut(s) | 435, 498, 683, 794 |
| BspLI | GGNNCC | 3 cut(s) | 153, 202, 258 |
| BspMI | ACCTGC | 2 cut(s) | 384, 685 |
| BspOI | GCTAGC | 1 cut(s) | 468 |
| BspT107I | GGYRCC | 2 cut(s) | 151, 256 |
| BspTI | CTTAAG | 1 cut(s) | 133 |
| BspTNI | GGTCTC | 1 cut(s) | 791 |
| BsrBI | CCGCTC | 1 cut(s) | 882 |
| BsrFI | RCCGGY | 1 cut(s) | 398 |
| BsrI | ACTGG | 3 cut(s) | 589, 675, 720 |
| BssAI | RCCGGY | 1 cut(s) | 398 |
| BssECI | CCNNGG | 7 cut(s) | 63, 109, 145, 191, 219, 489, 603 |
| BssMI | GATC | 2 cut(s) | 418, 678 |
| BssNI | GRCGYC | 2 cut(s) | 152, 765 |
| BssT1I | CCWWGG | 3 cut(s) | 109, 191, 489 |
| Bst2UI | CCWGG | 1 cut(s) | 146 |
| Bst4CI | ACNGT | 5 cut(s) | 64, 426, 559, 853, 988 |
| Bst6I | CTCTTC | 3 cut(s) | 324, 815, 947 |
| BstACI | GRCGYC | 2 cut(s) | 152, 765 |
| BstAFI | CTTAAG | 1 cut(s) | 133 |
| BstC8I | GCNNGC | 5 cut(s) | 122, 362, 466, 876, 880 |
| BstDEI | CTNAG | 5 cut(s) | 279, 549, 570, 635, 675 |
| BstDSI | CCRYGG | 3 cut(s) | 63, 489, 603 |
| BstEII | GGTNACC | 1 cut(s) | 697 |
| BstF5I | GGATG | 3 cut(s) | 53, 650, 985 |
| BstFNI | CGCG | 4 cut(s) | 435, 498, 683, 794 |
| BstH2I | RGCGCY | 3 cut(s) | 23, 155, 642 |
| BstHHI | GCGC | 6 cut(s) | 22, 154, 437, 500, 641, 902 |
| BstKTI | GATC | 2 cut(s) | 421, 681 |
| BstMAI | GTCTC | 3 cut(s) | 590, 791, 977 |
| BstMBI | GATC | 2 cut(s) | 418, 678 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 28, 114, 542, 616, 680, 731, 748, 833 |
| BstNI | CCWGG | 1 cut(s) | 146 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 387 |
| BstPI | GGTNACC | 1 cut(s) | 697 |
| BstSCI | CCNGG | 1 cut(s) | 144 |
| BstUI | CGCG | 4 cut(s) | 435, 498, 683, 794 |
| BstV1I | GCAGC | 5 cut(s) | 129, 323, 344, 675, 970 |
| BstV2I | GAAGAC | 2 cut(s) | 383, 795 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 490 |
| BsuRI | GGCC | 4 cut(s) | 58, 709, 734, 857 |
| BtgI | CCRYGG | 3 cut(s) | 63, 489, 603 |
| BtsCI | GGATG | 3 cut(s) | 53, 650, 985 |
| BtsIMutI | CAGTG | 1 cut(s) | 727 |
| BveI | ACCTGC | 2 cut(s) | 384, 685 |
| Cac8I | GCNNGC | 5 cut(s) | 122, 362, 466, 876, 880 |
| CaiI | CAGNNNCTG | 1 cut(s) | 670 |
| CfoI | GCGC | 6 cut(s) | 22, 154, 437, 500, 641, 902 |
| Cfr10I | RCCGGY | 1 cut(s) | 398 |
| Cfr13I | GGNCC | 3 cut(s) | 56, 493, 732 |
| CseI | GACGC | 2 cut(s) | 482, 800 |
| Csp6I | GTAC | 2 cut(s) | 257, 529 |
| CspAI | ACCGGT | 1 cut(s) | 398 |
| CviAII | CATG | 5 cut(s) | 184, 345, 470, 490, 729 |
| CviQI | GTAC | 2 cut(s) | 257, 529 |
| DdeI | CTNAG | 5 cut(s) | 279, 549, 570, 635, 675 |
| DinI | GGCGCC | 1 cut(s) | 153 |
| DpnI | GATC | 2 cut(s) | 420, 680 |
| DpnII | GATC | 2 cut(s) | 418, 678 |
| EaeI | YGGCCR | 1 cut(s) | 855 |
| Eam1104I | CTCTTC | 3 cut(s) | 324, 815, 947 |
| EarI | CTCTTC | 3 cut(s) | 324, 815, 947 |
| EciI | GGCGGA | 2 cut(s) | 83, 980 |
| Eco130I | CCWWGG | 3 cut(s) | 109, 191, 489 |
| Eco147I | AGGCCT | 1 cut(s) | 709 |
| Eco24I | GRGCYC | 1 cut(s) | 811 |
| Eco31I | GGTCTC | 1 cut(s) | 791 |
| Eco47I | GGWCC | 1 cut(s) | 493 |
| Eco47III | AGCGCT | 1 cut(s) | 21 |
| Eco88I | CYCGRG | 2 cut(s) | 220, 703 |
| Eco91I | GGTNACC | 1 cut(s) | 697 |
| EcoO109I | RGGNCCY | 1 cut(s) | 56 |
| EcoO65I | GGTNACC | 1 cut(s) | 697 |
| EcoRI | GAATTC | 1 cut(s) | 911 |
| EcoRII | CCWGG | 1 cut(s) | 144 |
| EcoT14I | CCWWGG | 3 cut(s) | 109, 191, 489 |
| EcoT38I | GRGCYC | 1 cut(s) | 811 |
| EgeI | GGCGCC | 1 cut(s) | 153 |
| EheI | GGCGCC | 1 cut(s) | 153 |
| ErhI | CCWWGG | 3 cut(s) | 109, 191, 489 |
| FaeI | CATG | 5 cut(s) | 187, 348, 473, 493, 732 |
| FaqI | GGGAC | 2 cut(s) | 172, 256 |
| FatI | CATG | 5 cut(s) | 183, 344, 469, 489, 728 |
| FauI | CCCGC | 4 cut(s) | 113, 189, 232, 676 |
| FauNDI | CATATG | 1 cut(s) | 904 |
| FokI | GGATG | 3 cut(s) | 60, 637, 992 |
| FriOI | GRGCYC | 1 cut(s) | 811 |
| FspBI | CTAG | 4 cut(s) | 465, 887, 926, 962 |
| GlaI | GCGC | 6 cut(s) | 21, 153, 436, 499, 640, 901 |
| GsaI | CCCAGC | 1 cut(s) | 540 |
| HaeII | RGCGCY | 3 cut(s) | 23, 155, 642 |
| HaeIII | GGCC | 4 cut(s) | 58, 709, 734, 857 |
| HapII | CCGG | 1 cut(s) | 399 |
| HgaI | GACGC | 2 cut(s) | 482, 800 |
| HhaI | GCGC | 6 cut(s) | 22, 154, 437, 500, 641, 902 |
| Hin1I | GRCGYC | 2 cut(s) | 152, 765 |
| Hin1II | CATG | 5 cut(s) | 187, 348, 473, 493, 732 |
| Hin6I | GCGC | 6 cut(s) | 20, 152, 435, 498, 639, 900 |
| HinP1I | GCGC | 6 cut(s) | 20, 152, 435, 498, 639, 900 |
| HincII | GTYRAC | 2 cut(s) | 508, 565 |
| HindII | GTYRAC | 2 cut(s) | 508, 565 |
| HinfI | GANTC | 5 cut(s) | 169, 179, 443, 598, 890 |
| HpaI | GTTAAC | 1 cut(s) | 508 |
| HpaII | CCGG | 1 cut(s) | 399 |
| HphI | GGTGA | 5 cut(s) | 388, 595, 706, 709, 859 |
| Hpy166II | GTNNAC | 5 cut(s) | 79, 130, 429, 508, 565 |
| Hpy188I | TCNGA | 5 cut(s) | 174, 280, 573, 595, 678 |
| Hpy188III | TCNNGA | 5 cut(s) | 45, 166, 268, 887, 916 |
| Hpy8I | GTNNAC | 5 cut(s) | 79, 130, 429, 508, 565 |
| Hpy99I | CGWCG | 3 cut(s) | 536, 563, 770 |
| HpyAV | CCTTC | 5 cut(s) | 47, 169, 214, 459, 838 |
| HpyCH4III | ACNGT | 5 cut(s) | 64, 426, 559, 853, 988 |
| HpyCH4IV | ACGT | 5 cut(s) | 249, 307, 388, 531, 765 |
| HpyCH4V | TGCA | 3 cut(s) | 117, 874, 1006 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 28, 114, 542, 616, 680, 731, 748, 833 |
| HpyF3I | CTNAG | 5 cut(s) | 279, 549, 570, 635, 675 |
| HpySE526I | ACGT | 5 cut(s) | 249, 307, 388, 531, 765 |
| Hsp92I | GRCGYC | 2 cut(s) | 152, 765 |
| Hsp92II | CATG | 5 cut(s) | 187, 348, 473, 493, 732 |
| HspAI | GCGC | 6 cut(s) | 20, 152, 435, 498, 639, 900 |
| KasI | GGCGCC | 1 cut(s) | 151 |
| KpnI | GGTACC | 1 cut(s) | 260 |
| KspAI | GTTAAC | 1 cut(s) | 508 |
| Kzo9I | GATC | 2 cut(s) | 418, 678 |
| Lsp1109I | GCAGC | 5 cut(s) | 129, 323, 344, 675, 970 |
| LweI | GCATC | 1 cut(s) | 606 |
| MaeI | CTAG | 4 cut(s) | 465, 887, 926, 962 |
| MaeII | ACGT | 5 cut(s) | 249, 307, 388, 531, 765 |
| MaeIII | GTNAC | 4 cut(s) | 455, 697, 712, 847 |
| MalI | GATC | 2 cut(s) | 420, 680 |
| MbiI | CCGCTC | 1 cut(s) | 882 |
| MboI | GATC | 2 cut(s) | 418, 678 |
| MboII | GAAGA | 8 cut(s) | 341, 383, 785, 794, 797, 800, 832, 934 |
| MhlI | GDGCHC | 1 cut(s) | 811 |
| MluCI | AATT | 4 cut(s) | 89, 407, 511, 911 |
| Mly113I | GGCGCC | 1 cut(s) | 152 |
| MlyI | GAGTC | 1 cut(s) | 592 |
| MmeI | TCCRAC | 2 cut(s) | 310, 957 |
| MroXI | GAANNNNTTC | 1 cut(s) | 75 |
| MseI | TTAA | 5 cut(s) | 134, 161, 273, 312, 507 |
| MslI | CAYNNNNRTG | 1 cut(s) | 84 |
| MspA1I | CMGCKG | 3 cut(s) | 120, 860, 1001 |
| MspCI | CTTAAG | 1 cut(s) | 133 |
| MspI | CCGG | 1 cut(s) | 399 |
| MspR9I | CCNGG | 1 cut(s) | 146 |
| MvaI | CCWGG | 1 cut(s) | 146 |
| MvnI | CGCG | 4 cut(s) | 435, 498, 683, 794 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 28, 114, 542, 616, 680, 731, 748, 833 |
| NarI | GGCGCC | 1 cut(s) | 152 |
| NcoI | CCATGG | 1 cut(s) | 489 |
| NdeI | CATATG | 1 cut(s) | 904 |
| NdeII | GATC | 2 cut(s) | 418, 678 |
| NheI | GCTAGC | 1 cut(s) | 464 |
| NlaIII | CATG | 5 cut(s) | 187, 348, 473, 493, 732 |
| NlaIV | GGNNCC | 3 cut(s) | 153, 202, 258 |
| NmuCI | GTSAC | 3 cut(s) | 697, 712, 847 |
| PaeR7I | CTCGAG | 1 cut(s) | 703 |
| PaqCI | CACCTGC | 1 cut(s) | 685 |
| PceI | AGGCCT | 1 cut(s) | 709 |
| PdmI | GAANNNNTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 4 cut(s) | 169, 179, 443, 890 |
| PinAI | ACCGGT | 1 cut(s) | 398 |
| PleI | GAGTC | 1 cut(s) | 592 |
| PluTI | GGCGCC | 1 cut(s) | 155 |
| PpsI | GAGTC | 1 cut(s) | 592 |
| PshAI | GACNNNNGTC | 1 cut(s) | 387 |
| Psp6I | CCWGG | 1 cut(s) | 144 |
| PspEI | GGTNACC | 1 cut(s) | 697 |
| PspFI | CCCAGC | 1 cut(s) | 536 |
| PspGI | CCWGG | 1 cut(s) | 144 |
| PspN4I | GGNNCC | 3 cut(s) | 153, 202, 258 |
| PspPI | GGNCC | 3 cut(s) | 56, 493, 732 |
| PspXI | VCTCGAGB | 1 cut(s) | 703 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 193, 225 |
| PstNI | CAGNNNCTG | 1 cut(s) | 670 |
| RsaI | GTAC | 2 cut(s) | 258, 530 |
| RsaNI | GTAC | 2 cut(s) | 257, 529 |
| RseI | CAYNNNNRTG | 1 cut(s) | 84 |
| SaqAI | TTAA | 5 cut(s) | 134, 161, 273, 312, 507 |
| Sau3AI | GATC | 2 cut(s) | 418, 678 |
| Sau96I | GGNCC | 3 cut(s) | 56, 493, 732 |
| SchI | GAGTC | 1 cut(s) | 592 |
| ScrFI | CCNGG | 1 cut(s) | 146 |
| SduI | GDGCHC | 1 cut(s) | 811 |
| SfaNI | GCATC | 1 cut(s) | 606 |
| SfoI | GGCGCC | 1 cut(s) | 153 |
| Sfr274I | CTCGAG | 1 cut(s) | 703 |
| SinI | GGWCC | 1 cut(s) | 493 |
| SlaI | CTCGAG | 1 cut(s) | 703 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 84 |
| SmlI | CTYRAG | 3 cut(s) | 133, 323, 703 |
| SmoI | CTYRAG | 3 cut(s) | 133, 323, 703 |
| Sse9I | AATT | 4 cut(s) | 89, 407, 511, 911 |
| SseBI | AGGCCT | 1 cut(s) | 709 |
| SspDI | GGCGCC | 1 cut(s) | 151 |
| SspMI | CTAG | 4 cut(s) | 465, 887, 926, 962 |
| StuI | AGGCCT | 1 cut(s) | 709 |
| StyD4I | CCNGG | 1 cut(s) | 144 |
| StyI | CCWWGG | 3 cut(s) | 109, 191, 489 |
| TaaI | ACNGT | 5 cut(s) | 64, 426, 559, 853, 988 |
| TaiI | ACGT | 5 cut(s) | 252, 310, 391, 534, 768 |
| TaqI | TCGA | 4 cut(s) | 165, 417, 704, 768 |
| TaqII | GACCGA | 1 cut(s) | 935 |
| TasI | AATT | 4 cut(s) | 89, 407, 511, 911 |
| TauI | GCSGC | 6 cut(s) | 141, 144, 548, 694, 754, 860 |
| TfiI | GAWTC | 4 cut(s) | 169, 179, 443, 890 |
| Tru1I | TTAA | 5 cut(s) | 134, 161, 273, 312, 507 |
| Tru9I | TTAA | 5 cut(s) | 134, 161, 273, 312, 507 |
| TscAI | CASTG | 1 cut(s) | 727 |
| TseFI | GTSAC | 3 cut(s) | 697, 712, 847 |
| TseI | GCWGC | 5 cut(s) | 117, 336, 357, 688, 958 |
| Tsp45I | GTSAC | 3 cut(s) | 697, 712, 847 |
| TspDTI | ATGAA | 3 cut(s) | 102, 639, 786 |
| TspGWI | ACGGA | 1 cut(s) | 643 |
| TspRI | CASTG | 1 cut(s) | 727 |
| Vha464I | CTTAAG | 1 cut(s) | 133 |
| VpaK11BI | GGWCC | 1 cut(s) | 493 |
| XapI | RAATTY | 1 cut(s) | 911 |
| XbaI | TCTAGA | 1 cut(s) | 886 |
| XhoI | CTCGAG | 1 cut(s) | 703 |
| XmnI | GAANNNNTTC | 1 cut(s) | 75 |
| XspI | CTAG | 4 cut(s) | 465, 887, 926, 962 |
| ZraI | GACGTC | 1 cut(s) | 766 |