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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 195 |
| AccBSI | CCGCTC | 2 cut(s) | 118, 193 |
| AccII | CGCG | 2 cut(s) | 13, 224 |
| AciI | CCGC | 9 cut(s) | 21, 92, 118, 182, 193, 222, 224, 234, 259 |
| AclI | AACGTT | 1 cut(s) | 83 |
| AclWI | GGATC | 1 cut(s) | 322 |
| AcoI | YGGCCR | 2 cut(s) | 249, 322 |
| AcuI | CTGAAG | 1 cut(s) | 25 |
| AcyI | GRCGYC | 2 cut(s) | 95, 196 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 181, 205, 258, 311 |
| AjiI | CACGTC | 1 cut(s) | 265 |
| AjnI | CCWGG | 1 cut(s) | 106 |
| AluBI | AGCT | 5 cut(s) | 45, 124, 157, 241, 292 |
| AluI | AGCT | 5 cut(s) | 45, 124, 157, 241, 292 |
| Alw21I | GWGCWC | 1 cut(s) | 126 |
| Alw26I | GTCTC | 2 cut(s) | 149, 289 |
| AlwI | GGATC | 1 cut(s) | 322 |
| AoxI | GGCC | 4 cut(s) | 48, 172, 249, 322 |
| ApeKI | GCWGC | 2 cut(s) | 73, 103 |
| AspLEI | GCGC | 2 cut(s) | 15, 198 |
| AspS9I | GGNCC | 1 cut(s) | 172 |
| AsuNHI | GCTAGC | 2 cut(s) | 178, 230 |
| BanI | GGYRCC | 1 cut(s) | 195 |
| BanII | GRGCYC | 1 cut(s) | 126 |
| Bbv12I | GWGCWC | 1 cut(s) | 126 |
| BbvI | GCAGC | 2 cut(s) | 60, 115 |
| BceAI | ACGGC | 2 cut(s) | 236, 309 |
| BciT130I | CCWGG | 1 cut(s) | 108 |
| BclI | TGATCA | 1 cut(s) | 277 |
| BcoDI | GTCTC | 2 cut(s) | 149, 289 |
| BfaI | CTAG | 3 cut(s) | 168, 179, 231 |
| BfmI | CTRYAG | 1 cut(s) | 309 |
| BfoI | RGCGCY | 1 cut(s) | 199 |
| BisI | GCNGC | 6 cut(s) | 74, 93, 104, 194, 222, 235 |
| BlsI | GCNGC | 6 cut(s) | 75, 94, 105, 195, 223, 236 |
| Bme1390I | CCNGG | 1 cut(s) | 108 |
| BmgBI | CACGTC | 1 cut(s) | 265 |
| BmgT120I | GGNCC | 1 cut(s) | 172 |
| BmiI | GGNNCC | 2 cut(s) | 173, 197 |
| BmrFI | CCNGG | 1 cut(s) | 108 |
| BmsI | GCATC | 2 cut(s) | 208, 217 |
| BmtI | GCTAGC | 2 cut(s) | 182, 234 |
| BpmI | CTGGAG | 3 cut(s) | 129, 131, 314 |
| BsaHI | GRCGYC | 2 cut(s) | 95, 196 |
| BsaI | GGTCTC | 1 cut(s) | 149 |
| BsaJI | CCNNGG | 2 cut(s) | 204, 222 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 181, 205, 258, 311 |
| Bse118I | RCCGGY | 1 cut(s) | 174 |
| Bse1I | ACTGG | 1 cut(s) | 31 |
| Bse3DI | GCAATG | 1 cut(s) | 252 |
| BseBI | CCWGG | 1 cut(s) | 108 |
| BseDI | CCNNGG | 2 cut(s) | 204, 222 |
| BseGI | GGATG | 1 cut(s) | 232 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 181, 205, 258, 311 |
| BseMI | GCAATG | 1 cut(s) | 252 |
| BseNI | ACTGG | 1 cut(s) | 31 |
| BseRI | GAGGAG | 1 cut(s) | 146 |
| BseXI | GCAGC | 2 cut(s) | 60, 115 |
| BsgI | GTGCAG | 1 cut(s) | 59 |
| Bsh1236I | CGCG | 2 cut(s) | 13, 224 |
| BshFI | GGCC | 4 cut(s) | 50, 174, 251, 324 |
| BshNI | GGYRCC | 1 cut(s) | 195 |
| BsiHKAI | GWGCWC | 1 cut(s) | 126 |
| BsiSI | CCGG | 1 cut(s) | 175 |
| BslFI | GGGAC | 2 cut(s) | 275, 287 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 181, 205, 258, 311 |
| BsmAI | GTCTC | 2 cut(s) | 149, 289 |
| BsmFI | GGGAC | 2 cut(s) | 275, 287 |
| BsnI | GGCC | 4 cut(s) | 50, 174, 251, 324 |
| Bso31I | GGTCTC | 1 cut(s) | 149 |
| Bsp1286I | GDGCHC | 1 cut(s) | 126 |
| Bsp143I | GATC | 3 cut(s) | 135, 277, 314 |
| BspACI | CCGC | 9 cut(s) | 21, 92, 118, 182, 193, 222, 224, 234, 259 |
| BspANI | GGCC | 4 cut(s) | 50, 174, 251, 324 |
| BspFNI | CGCG | 2 cut(s) | 13, 224 |
| BspLI | GGNNCC | 2 cut(s) | 173, 197 |
| BspOI | GCTAGC | 2 cut(s) | 182, 234 |
| BspPI | GGATC | 1 cut(s) | 322 |
| BspT107I | GGYRCC | 1 cut(s) | 195 |
| BspTNI | GGTCTC | 1 cut(s) | 149 |
| BsrBI | CCGCTC | 2 cut(s) | 118, 193 |
| BsrDI | GCAATG | 1 cut(s) | 252 |
| BsrFI | RCCGGY | 1 cut(s) | 174 |
| BsrI | ACTGG | 1 cut(s) | 31 |
| BssAI | RCCGGY | 1 cut(s) | 174 |
| BssECI | CCNNGG | 2 cut(s) | 204, 222 |
| BssMI | GATC | 3 cut(s) | 135, 277, 314 |
| BssNI | GRCGYC | 2 cut(s) | 95, 196 |
| BssT1I | CCWWGG | 1 cut(s) | 204 |
| Bst2UI | CCWGG | 1 cut(s) | 108 |
| BstACI | GRCGYC | 2 cut(s) | 95, 196 |
| BstC8I | GCNNGC | 5 cut(s) | 176, 180, 232, 239, 243 |
| BstDEI | CTNAG | 2 cut(s) | 99, 288 |
| BstDSI | CCRYGG | 1 cut(s) | 222 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 203, 309 |
| BstF5I | GGATG | 1 cut(s) | 232 |
| BstFNI | CGCG | 2 cut(s) | 13, 224 |
| BstH2I | RGCGCY | 1 cut(s) | 199 |
| BstHHI | GCGC | 2 cut(s) | 15, 198 |
| BstKTI | GATC | 3 cut(s) | 138, 280, 317 |
| BstMAI | GTCTC | 2 cut(s) | 149, 289 |
| BstMBI | GATC | 3 cut(s) | 135, 277, 314 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 227 |
| BstNI | CCWGG | 1 cut(s) | 108 |
| BstSCI | CCNGG | 1 cut(s) | 106 |
| BstSFI | CTRYAG | 1 cut(s) | 309 |
| BstUI | CGCG | 2 cut(s) | 13, 224 |
| BstV1I | GCAGC | 2 cut(s) | 60, 115 |
| BsuRI | GGCC | 4 cut(s) | 50, 174, 251, 324 |
| BtgI | CCRYGG | 1 cut(s) | 222 |
| BtrI | CACGTC | 1 cut(s) | 265 |
| BtsCI | GGATG | 1 cut(s) | 232 |
| Cac8I | GCNNGC | 5 cut(s) | 176, 180, 232, 239, 243 |
| CfoI | GCGC | 2 cut(s) | 15, 198 |
| Cfr10I | RCCGGY | 1 cut(s) | 174 |
| Cfr13I | GGNCC | 1 cut(s) | 172 |
| Cfr42I | CCGCGG | 1 cut(s) | 225 |
| CseI | GACGC | 1 cut(s) | 84 |
| CviAII | CATG | 1 cut(s) | 281 |
| DdeI | CTNAG | 2 cut(s) | 99, 288 |
| DinI | GGCGCC | 1 cut(s) | 197 |
| DpnI | GATC | 3 cut(s) | 137, 279, 316 |
| DpnII | GATC | 3 cut(s) | 135, 277, 314 |
| EaeI | YGGCCR | 2 cut(s) | 249, 322 |
| Ecl136II | GAGCTC | 1 cut(s) | 124 |
| Eco130I | CCWWGG | 1 cut(s) | 204 |
| Eco24I | GRGCYC | 1 cut(s) | 126 |
| Eco31I | GGTCTC | 1 cut(s) | 149 |
| Eco53kI | GAGCTC | 1 cut(s) | 124 |
| Eco57I | CTGAAG | 1 cut(s) | 25 |
| EcoICRI | GAGCTC | 1 cut(s) | 124 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 203, 309 |
| EcoRII | CCWGG | 1 cut(s) | 106 |
| EcoT14I | CCWWGG | 1 cut(s) | 204 |
| EcoT38I | GRGCYC | 1 cut(s) | 126 |
| EgeI | GGCGCC | 1 cut(s) | 197 |
| EheI | GGCGCC | 1 cut(s) | 197 |
| ErhI | CCWWGG | 1 cut(s) | 204 |
| FaeI | CATG | 1 cut(s) | 284 |
| FaiI | YATR | 1 cut(s) | 282 |
| FaqI | GGGAC | 2 cut(s) | 275, 287 |
| FatI | CATG | 1 cut(s) | 280 |
| FauI | CCCGC | 2 cut(s) | 111, 252 |
| FbaI | TGATCA | 1 cut(s) | 277 |
| Fnu4HI | GCNGC | 6 cut(s) | 74, 93, 104, 194, 222, 235 |
| FokI | GGATG | 1 cut(s) | 239 |
| FriOI | GRGCYC | 1 cut(s) | 126 |
| Fsp4HI | GCNGC | 6 cut(s) | 74, 93, 104, 194, 222, 235 |
| FspBI | CTAG | 3 cut(s) | 168, 179, 231 |
| GlaI | GCGC | 2 cut(s) | 14, 197 |
| GluI | GCNGC | 6 cut(s) | 74, 93, 104, 194, 222, 235 |
| GsuI | CTGGAG | 3 cut(s) | 129, 131, 314 |
| HaeII | RGCGCY | 1 cut(s) | 199 |
| HaeIII | GGCC | 4 cut(s) | 50, 174, 251, 324 |
| HapII | CCGG | 1 cut(s) | 175 |
| HgaI | GACGC | 1 cut(s) | 84 |
| HhaI | GCGC | 2 cut(s) | 15, 198 |
| Hin1I | GRCGYC | 2 cut(s) | 95, 196 |
| Hin1II | CATG | 1 cut(s) | 284 |
| Hin6I | GCGC | 2 cut(s) | 13, 196 |
| HinP1I | GCGC | 2 cut(s) | 13, 196 |
| HpaII | CCGG | 1 cut(s) | 175 |
| Hpy188I | TCNGA | 1 cut(s) | 128 |
| Hpy188III | TCNNGA | 1 cut(s) | 148 |
| HpyAV | CCTTC | 2 cut(s) | 49, 61 |
| HpyCH4IV | ACGT | 2 cut(s) | 83, 264 |
| HpyCH4V | TGCA | 1 cut(s) | 76 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 227 |
| HpyF3I | CTNAG | 2 cut(s) | 99, 288 |
| HpySE526I | ACGT | 2 cut(s) | 83, 264 |
| Hsp92I | GRCGYC | 2 cut(s) | 95, 196 |
| Hsp92II | CATG | 1 cut(s) | 284 |
| HspAI | GCGC | 2 cut(s) | 13, 196 |
| KasI | GGCGCC | 1 cut(s) | 195 |
| KroI | GCCGGC | 1 cut(s) | 174 |
| KroNI | GCCGGC | 1 cut(s) | 176 |
| Ksp22I | TGATCA | 1 cut(s) | 277 |
| KspI | CCGCGG | 1 cut(s) | 225 |
| Kzo9I | GATC | 3 cut(s) | 135, 277, 314 |
| LmnI | GCTCC | 4 cut(s) | 121, 129, 190, 295 |
| Lsp1109I | GCAGC | 2 cut(s) | 60, 115 |
| LweI | GCATC | 2 cut(s) | 208, 217 |
| MaeI | CTAG | 3 cut(s) | 168, 179, 231 |
| MaeII | ACGT | 2 cut(s) | 83, 264 |
| MalI | GATC | 3 cut(s) | 137, 279, 316 |
| MbiI | CCGCTC | 2 cut(s) | 118, 193 |
| MboI | GATC | 3 cut(s) | 135, 277, 314 |
| MhlI | GDGCHC | 1 cut(s) | 126 |
| Mly113I | GGCGCC | 1 cut(s) | 196 |
| MnlI | CCTC | 4 cut(s) | 124, 133, 157, 178 |
| MroNI | GCCGGC | 1 cut(s) | 174 |
| MspA1I | CMGCKG | 2 cut(s) | 224, 259 |
| MspI | CCGG | 1 cut(s) | 175 |
| MspR9I | CCNGG | 1 cut(s) | 108 |
| MvaI | CCWGG | 1 cut(s) | 108 |
| MvnI | CGCG | 2 cut(s) | 13, 224 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 227 |
| NaeI | GCCGGC | 1 cut(s) | 176 |
| NarI | GGCGCC | 1 cut(s) | 196 |
| NdeII | GATC | 3 cut(s) | 135, 277, 314 |
| NgoMIV | GCCGGC | 1 cut(s) | 174 |
| NheI | GCTAGC | 2 cut(s) | 178, 230 |
| NlaIII | CATG | 1 cut(s) | 284 |
| NlaIV | GGNNCC | 2 cut(s) | 173, 197 |
| NmeAIII | GCCGAG | 1 cut(s) | 26 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 84 |
| PdiI | GCCGGC | 1 cut(s) | 176 |
| PkrI | GCNGC | 6 cut(s) | 75, 94, 105, 195, 223, 236 |
| PluTI | GGCGCC | 1 cut(s) | 199 |
| Psp124BI | GAGCTC | 1 cut(s) | 126 |
| Psp1406I | AACGTT | 1 cut(s) | 83 |
| Psp6I | CCWGG | 1 cut(s) | 106 |
| PspGI | CCWGG | 1 cut(s) | 106 |
| PspN4I | GGNNCC | 2 cut(s) | 173, 197 |
| PspPI | GGNCC | 1 cut(s) | 172 |
| SacI | GAGCTC | 1 cut(s) | 126 |
| SacII | CCGCGG | 1 cut(s) | 225 |
| SatI | GCNGC | 6 cut(s) | 74, 93, 104, 194, 222, 235 |
| Sau3AI | GATC | 3 cut(s) | 135, 277, 314 |
| Sau96I | GGNCC | 1 cut(s) | 172 |
| ScrFI | CCNGG | 1 cut(s) | 108 |
| SduI | GDGCHC | 1 cut(s) | 126 |
| SetI | ASST | 8 cut(s) | 47, 86, 126, 159, 189, 243, 267, 294 |
| SfaNI | GCATC | 2 cut(s) | 208, 217 |
| SfcI | CTRYAG | 1 cut(s) | 309 |
| SfoI | GGCGCC | 1 cut(s) | 197 |
| Sfr303I | CCGCGG | 1 cut(s) | 225 |
| SgrBI | CCGCGG | 1 cut(s) | 225 |
| SsiI | CCGC | 9 cut(s) | 21, 92, 118, 182, 193, 222, 224, 234, 259 |
| SspDI | GGCGCC | 1 cut(s) | 195 |
| SspMI | CTAG | 3 cut(s) | 168, 179, 231 |
| SstI | GAGCTC | 1 cut(s) | 126 |
| StyD4I | CCNGG | 1 cut(s) | 106 |
| StyI | CCWWGG | 1 cut(s) | 204 |
| TaiI | ACGT | 2 cut(s) | 86, 267 |
| TaqI | TCGA | 1 cut(s) | 138 |
| TaqII | GACCGA | 1 cut(s) | 44 |
| TauI | GCSGC | 4 cut(s) | 95, 196, 224, 237 |
| TseI | GCWGC | 2 cut(s) | 73, 103 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 203, 309 |
| XspI | CTAG | 3 cut(s) | 168, 179, 231 |