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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 246 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 231 |
| AccBSI | CCGCTC | 1 cut(s) | 134 |
| AcsI | RAATTY | 2 cut(s) | 180, 353 |
| AcyI | GRCGYC | 2 cut(s) | 247, 264 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 231, 418 |
| AflIII | ACRYGT | 1 cut(s) | 228 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 364 |
| AluBI | AGCT | 1 cut(s) | 313 |
| AluI | AGCT | 1 cut(s) | 313 |
| AoxI | GGCC | 2 cut(s) | 17, 278 |
| ApeKI | GCWGC | 3 cut(s) | 238, 258, 337 |
| ApoI | RAATTY | 2 cut(s) | 180, 353 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 191, 223 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 297 |
| AspLEI | GCGC | 3 cut(s) | 249, 330, 377 |
| AspS9I | GGNCC | 2 cut(s) | 17, 278 |
| AsuC2I | CCSGG | 3 cut(s) | 66, 148, 332 |
| AsuHPI | GGTGA | 1 cut(s) | 164 |
| AsuNHI | GCTAGC | 1 cut(s) | 118 |
| BanI | GGYRCC | 1 cut(s) | 246 |
| BbvI | GCAGC | 3 cut(s) | 225, 245, 324 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 240, 274 |
| BcnI | CCSGG | 3 cut(s) | 66, 148, 332 |
| BfaI | CTAG | 1 cut(s) | 119 |
| BfmI | CTRYAG | 1 cut(s) | 12 |
| BfoI | RGCGCY | 2 cut(s) | 250, 331 |
| BisI | GCNGC | 6 cut(s) | 33, 132, 239, 259, 262, 338 |
| BlsI | GCNGC | 6 cut(s) | 34, 133, 240, 260, 263, 339 |
| Bme1390I | CCNGG | 3 cut(s) | 66, 148, 332 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 364 |
| BmgT120I | GGNCC | 2 cut(s) | 17, 278 |
| BmiI | GGNNCC | 1 cut(s) | 248 |
| BmrFI | CCNGG | 3 cut(s) | 66, 148, 332 |
| BmtI | GCTAGC | 1 cut(s) | 122 |
| BpuMI | CCSGG | 3 cut(s) | 66, 148, 332 |
| BsaHI | GRCGYC | 2 cut(s) | 247, 264 |
| BsaJI | CCNNGG | 4 cut(s) | 27, 147, 331, 379 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 231, 418 |
| BseDI | CCNNGG | 4 cut(s) | 27, 147, 331, 379 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 231, 418 |
| BseXI | GCAGC | 3 cut(s) | 225, 245, 324 |
| Bsh1285I | CGRYCG | 3 cut(s) | 45, 285, 388 |
| BshFI | GGCC | 2 cut(s) | 19, 280 |
| BshNI | GGYRCC | 1 cut(s) | 246 |
| BsiEI | CGRYCG | 3 cut(s) | 45, 285, 388 |
| BsiSI | CCGG | 3 cut(s) | 66, 147, 331 |
| BslFI | GGGAC | 1 cut(s) | 207 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 231, 418 |
| BsmFI | GGGAC | 1 cut(s) | 207 |
| BsnI | GGCC | 2 cut(s) | 19, 280 |
| Bsp143I | GATC | 3 cut(s) | 186, 282, 385 |
| BspANI | GGCC | 2 cut(s) | 19, 280 |
| BspLI | GGNNCC | 1 cut(s) | 248 |
| BspOI | GCTAGC | 1 cut(s) | 122 |
| BspT107I | GGYRCC | 1 cut(s) | 246 |
| BsrBI | CCGCTC | 1 cut(s) | 134 |
| BssECI | CCNNGG | 4 cut(s) | 27, 147, 331, 379 |
| BssMI | GATC | 3 cut(s) | 186, 282, 385 |
| BssNI | GRCGYC | 2 cut(s) | 247, 264 |
| BssT1I | CCWWGG | 1 cut(s) | 379 |
| Bst6I | CTCTTC | 1 cut(s) | 42 |
| BstACI | GRCGYC | 2 cut(s) | 247, 264 |
| BstC8I | GCNNGC | 2 cut(s) | 120, 420 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstH2I | RGCGCY | 2 cut(s) | 250, 331 |
| BstHHI | GCGC | 3 cut(s) | 249, 330, 377 |
| BstKTI | GATC | 3 cut(s) | 189, 285, 388 |
| BstMBI | GATC | 3 cut(s) | 186, 282, 385 |
| BstMCI | CGRYCG | 3 cut(s) | 45, 285, 388 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 128, 244, 255, 334, 381 |
| BstNSI | RCATGY | 1 cut(s) | 232 |
| BstSCI | CCNGG | 3 cut(s) | 64, 146, 330 |
| BstSFI | CTRYAG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 3 cut(s) | 225, 245, 324 |
| BsuRI | GGCC | 2 cut(s) | 19, 280 |
| BtgZI | GCGATG | 1 cut(s) | 111 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| Cac8I | GCNNGC | 2 cut(s) | 120, 420 |
| CfoI | GCGC | 3 cut(s) | 249, 330, 377 |
| Cfr13I | GGNCC | 2 cut(s) | 17, 278 |
| CseI | GACGC | 3 cut(s) | 71, 164, 253 |
| CviAII | CATG | 2 cut(s) | 229, 407 |
| CviJI | RGCY | 7 cut(s) | 11, 19, 238, 280, 313, 337, 422 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 19, 238, 280, 313, 337, 422 |
| DinI | GGCGCC | 1 cut(s) | 248 |
| DpnI | GATC | 3 cut(s) | 188, 284, 387 |
| DpnII | GATC | 3 cut(s) | 186, 282, 385 |
| DriI | GACNNNNNGTC | 1 cut(s) | 364 |
| Eam1104I | CTCTTC | 1 cut(s) | 42 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 364 |
| EarI | CTCTTC | 1 cut(s) | 42 |
| EciI | GGCGGA | 2 cut(s) | 75, 305 |
| Eco130I | CCWWGG | 1 cut(s) | 379 |
| EcoT14I | CCWWGG | 1 cut(s) | 379 |
| EgeI | GGCGCC | 1 cut(s) | 248 |
| EheI | GGCGCC | 1 cut(s) | 248 |
| ErhI | CCWWGG | 1 cut(s) | 379 |
| FaeI | CATG | 2 cut(s) | 232, 410 |
| FaiI | YATR | 7 cut(s) | 129, 230, 309, 319, 321, 408, 429 |
| FaqI | GGGAC | 1 cut(s) | 207 |
| FatI | CATG | 2 cut(s) | 228, 406 |
| FauI | CCCGC | 3 cut(s) | 115, 207, 411 |
| Fnu4HI | GCNGC | 6 cut(s) | 33, 132, 239, 259, 262, 338 |
| FokI | GGATG | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 6 cut(s) | 33, 132, 239, 259, 262, 338 |
| FspBI | CTAG | 1 cut(s) | 119 |
| GlaI | GCGC | 3 cut(s) | 248, 329, 376 |
| GluI | GCNGC | 6 cut(s) | 33, 132, 239, 259, 262, 338 |
| HaeII | RGCGCY | 2 cut(s) | 250, 331 |
| HaeIII | GGCC | 2 cut(s) | 19, 280 |
| HapII | CCGG | 3 cut(s) | 66, 147, 331 |
| HgaI | GACGC | 3 cut(s) | 71, 164, 253 |
| HhaI | GCGC | 3 cut(s) | 249, 330, 377 |
| Hin1I | GRCGYC | 2 cut(s) | 247, 264 |
| Hin1II | CATG | 2 cut(s) | 232, 410 |
| Hin6I | GCGC | 3 cut(s) | 247, 328, 375 |
| HinP1I | GCGC | 3 cut(s) | 247, 328, 375 |
| HinfI | GANTC | 3 cut(s) | 359, 402, 431 |
| HpaII | CCGG | 3 cut(s) | 66, 147, 331 |
| HphI | GGTGA | 1 cut(s) | 164 |
| Hpy188III | TCNNGA | 1 cut(s) | 389 |
| Hpy99I | CGWCG | 5 cut(s) | 94, 112, 269, 367, 370 |
| HpyAV | CCTTC | 3 cut(s) | 269, 392, 422 |
| HpyCH4IV | ACGT | 1 cut(s) | 107 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 128, 244, 255, 334, 381 |
| HpySE526I | ACGT | 1 cut(s) | 107 |
| Hsp92I | GRCGYC | 2 cut(s) | 247, 264 |
| Hsp92II | CATG | 2 cut(s) | 232, 410 |
| HspAI | GCGC | 3 cut(s) | 247, 328, 375 |
| KasI | GGCGCC | 1 cut(s) | 246 |
| Kzo9I | GATC | 3 cut(s) | 186, 282, 385 |
| LpnPI | CCDG | 3 cut(s) | 79, 160, 344 |
| Lsp1109I | GCAGC | 3 cut(s) | 225, 245, 324 |
| MaeI | CTAG | 1 cut(s) | 119 |
| MaeII | ACGT | 1 cut(s) | 107 |
| MaeIII | GTNAC | 1 cut(s) | 152 |
| MalI | GATC | 3 cut(s) | 188, 284, 387 |
| MbiI | CCGCTC | 1 cut(s) | 134 |
| MboI | GATC | 3 cut(s) | 186, 282, 385 |
| MboII | GAAGA | 2 cut(s) | 50, 59 |
| MluCI | AATT | 2 cut(s) | 180, 353 |
| Mly113I | GGCGCC | 1 cut(s) | 247 |
| MlyI | GAGTC | 2 cut(s) | 353, 425 |
| MnlI | CCTC | 4 cut(s) | 37, 43, 72, 185 |
| MroXI | GAANNNNTTC | 1 cut(s) | 297 |
| MslI | CAYNNNNRTG | 1 cut(s) | 306 |
| MspI | CCGG | 3 cut(s) | 66, 147, 331 |
| MspR9I | CCNGG | 3 cut(s) | 66, 148, 332 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 128, 244, 255, 334, 381 |
| NarI | GGCGCC | 1 cut(s) | 247 |
| NciI | CCSGG | 3 cut(s) | 66, 148, 332 |
| NdeII | GATC | 3 cut(s) | 186, 282, 385 |
| NheI | GCTAGC | 1 cut(s) | 118 |
| NlaIII | CATG | 2 cut(s) | 232, 410 |
| NlaIV | GGNNCC | 1 cut(s) | 248 |
| NmeAIII | GCCGAG | 1 cut(s) | 8 |
| NmuCI | GTSAC | 1 cut(s) | 152 |
| NspI | RCATGY | 1 cut(s) | 232 |
| PciI | ACATGT | 1 cut(s) | 228 |
| PdmI | GAANNNNTTC | 1 cut(s) | 297 |
| PfeI | GAWTC | 1 cut(s) | 402 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 231 |
| PkrI | GCNGC | 6 cut(s) | 34, 133, 240, 260, 263, 339 |
| Ple19I | CGATCG | 2 cut(s) | 285, 388 |
| PleI | GAGTC | 2 cut(s) | 353, 425 |
| PluTI | GGCGCC | 1 cut(s) | 250 |
| PpsI | GAGTC | 2 cut(s) | 353, 425 |
| PscI | ACATGT | 1 cut(s) | 228 |
| PspN4I | GGNNCC | 1 cut(s) | 248 |
| PspPI | GGNCC | 2 cut(s) | 17, 278 |
| PvuI | CGATCG | 2 cut(s) | 285, 388 |
| RseI | CAYNNNNRTG | 1 cut(s) | 306 |
| SatI | GCNGC | 6 cut(s) | 33, 132, 239, 259, 262, 338 |
| Sau3AI | GATC | 3 cut(s) | 186, 282, 385 |
| Sau96I | GGNCC | 2 cut(s) | 17, 278 |
| SchI | GAGTC | 2 cut(s) | 353, 425 |
| ScrFI | CCNGG | 3 cut(s) | 66, 148, 332 |
| SetI | ASST | 5 cut(s) | 29, 110, 177, 204, 315 |
| SfcI | CTRYAG | 1 cut(s) | 12 |
| SfoI | GGCGCC | 1 cut(s) | 248 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 306 |
| Sse9I | AATT | 2 cut(s) | 180, 353 |
| SspDI | GGCGCC | 1 cut(s) | 246 |
| SspMI | CTAG | 1 cut(s) | 119 |
| StyD4I | CCNGG | 3 cut(s) | 64, 146, 330 |
| StyI | CCWWGG | 1 cut(s) | 379 |
| TaiI | ACGT | 1 cut(s) | 110 |
| TaqI | TCGA | 2 cut(s) | 198, 388 |
| TaqII | GACCGA | 1 cut(s) | 59 |
| TasI | AATT | 2 cut(s) | 180, 353 |
| TauI | GCSGC | 3 cut(s) | 35, 134, 264 |
| TfiI | GAWTC | 1 cut(s) | 402 |
| TseFI | GTSAC | 1 cut(s) | 152 |
| TseI | GCWGC | 3 cut(s) | 238, 258, 337 |
| Tsp45I | GTSAC | 1 cut(s) | 152 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 231 |
| XapI | RAATTY | 2 cut(s) | 180, 353 |
| XceI | RCATGY | 1 cut(s) | 232 |
| XmnI | GAANNNNTTC | 1 cut(s) | 297 |
| XspI | CTAG | 1 cut(s) | 119 |