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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 752, 839 |
| AccBSI | CCGCTC | 6 cut(s) | 61, 88, 367, 864, 935, 968 |
| AccII | CGCG | 2 cut(s) | 432, 722 |
| AclWI | GGATC | 2 cut(s) | 435, 454 |
| AcoI | YGGCCR | 2 cut(s) | 309, 630 |
| AcuI | CTGAAG | 2 cut(s) | 133, 449 |
| AcyI | GRCGYC | 1 cut(s) | 304 |
| AfaI | GTAC | 1 cut(s) | 943 |
| AfeI | AGCGCT | 1 cut(s) | 778 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 202, 259, 366, 423, 469, 972 |
| AgsI | TTSAA | 1 cut(s) | 649 |
| AjnI | CCWGG | 7 cut(s) | 105, 195, 255, 306, 372, 482, 525 |
| AluBI | AGCT | 7 cut(s) | 153, 232, 265, 400, 476, 505, 533 |
| AluI | AGCT | 7 cut(s) | 153, 232, 265, 400, 476, 505, 533 |
| Alw21I | GWGCWC | 2 cut(s) | 125, 234 |
| Alw26I | GTCTC | 4 cut(s) | 13, 397, 904, 1019 |
| AlwI | GGATC | 2 cut(s) | 435, 454 |
| Ama87I | CYCGRG | 4 cut(s) | 92, 216, 233, 930 |
| Aor51HI | AGCGCT | 1 cut(s) | 778 |
| AoxI | GGCC | 8 cut(s) | 156, 250, 309, 597, 618, 630, 695, 782 |
| ApeKI | GCWGC | 4 cut(s) | 102, 421, 554, 740 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 339, 371 |
| AspLEI | GCGC | 1 cut(s) | 779 |
| AspS9I | GGNCC | 7 cut(s) | 30, 250, 370, 486, 695, 782, 975 |
| AsuC2I | CCSGG | 2 cut(s) | 217, 218 |
| AsuHPI | GGTGA | 1 cut(s) | 508 |
| AvaI | CYCGRG | 4 cut(s) | 92, 216, 233, 930 |
| AvaII | GGWCC | 4 cut(s) | 30, 370, 486, 975 |
| BaeGI | GKGCMC | 2 cut(s) | 757, 844 |
| BalI | TGGCCA | 2 cut(s) | 311, 632 |
| BanI | GGYRCC | 2 cut(s) | 752, 839 |
| BanII | GRGCYC | 2 cut(s) | 234, 962 |
| BauI | CACGAG | 1 cut(s) | 339 |
| Bbv12I | GWGCWC | 2 cut(s) | 125, 234 |
| BbvCI | CCTCAGC | 3 cut(s) | 492, 534, 747 |
| BbvI | GCAGC | 4 cut(s) | 89, 408, 541, 727 |
| BccI | CCATC | 4 cut(s) | 41, 706, 793, 999 |
| BceAI | ACGGC | 1 cut(s) | 344 |
| BciT130I | CCWGG | 7 cut(s) | 107, 197, 257, 308, 374, 484, 527 |
| BcnI | CCSGG | 2 cut(s) | 217, 218 |
| BcoDI | GTCTC | 4 cut(s) | 13, 397, 904, 1019 |
| BfaI | CTAG | 1 cut(s) | 401 |
| BfoI | RGCGCY | 1 cut(s) | 780 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 694 |
| Bme1390I | CCNGG | 9 cut(s) | 107, 197, 217, 218, 257, 308, 374, 484, 527 |
| Bme18I | GGWCC | 4 cut(s) | 30, 370, 486, 975 |
| BmeT110I | CYCGRG | 4 cut(s) | 92, 216, 233, 930 |
| BmgT120I | GGNCC | 7 cut(s) | 30, 250, 370, 486, 695, 782, 975 |
| BmiI | GGNNCC | 6 cut(s) | 31, 371, 735, 754, 822, 841 |
| BmrFI | CCNGG | 9 cut(s) | 107, 197, 217, 218, 257, 308, 374, 484, 527 |
| BmsI | GCATC | 3 cut(s) | 316, 325, 689 |
| BpmI | CTGGAG | 4 cut(s) | 128, 239, 395, 527 |
| Bpu10I | CCTNAGC | 6 cut(s) | 57, 276, 492, 534, 747, 760 |
| BpuMI | CCSGG | 2 cut(s) | 217, 218 |
| Bsa29I | ATCGAT | 1 cut(s) | 666 |
| BsaHI | GRCGYC | 1 cut(s) | 304 |
| BsaI | GGTCTC | 2 cut(s) | 13, 904 |
| BsaJI | CCNNGG | 5 cut(s) | 216, 256, 526, 606, 627 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 377, 407 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 202, 259, 366, 423, 469, 972 |
| Bse1I | ACTGG | 2 cut(s) | 291, 621 |
| BseBI | CCWGG | 7 cut(s) | 107, 197, 257, 308, 374, 484, 527 |
| BseCI | ATCGAT | 1 cut(s) | 666 |
| BseDI | CCNNGG | 5 cut(s) | 216, 256, 526, 606, 627 |
| BseGI | GGATG | 4 cut(s) | 298, 680, 733, 820 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 202, 259, 366, 423, 469, 972 |
| BseMII | CTCAG | 7 cut(s) | 48, 483, 525, 738, 861, 902, 990 |
| BseNI | ACTGG | 2 cut(s) | 291, 621 |
| BseRI | GAGGAG | 1 cut(s) | 254 |
| BseSI | GKGCMC | 2 cut(s) | 757, 844 |
| BseXI | GCAGC | 4 cut(s) | 89, 408, 541, 727 |
| BseYI | CCCAGC | 3 cut(s) | 265, 684, 779 |
| Bsh1236I | CGCG | 2 cut(s) | 432, 722 |
| BshFI | GGCC | 8 cut(s) | 158, 252, 311, 599, 620, 632, 697, 784 |
| BshNI | GGYRCC | 2 cut(s) | 752, 839 |
| BshVI | ATCGAT | 1 cut(s) | 666 |
| BsiHKAI | GWGCWC | 2 cut(s) | 125, 234 |
| BsiHKCI | CYCGRG | 4 cut(s) | 92, 216, 233, 930 |
| BsiSI | CCGG | 1 cut(s) | 217 |
| BslFI | GGGAC | 2 cut(s) | 199, 383 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 202, 259, 366, 423, 469, 972 |
| BsmAI | GTCTC | 4 cut(s) | 13, 397, 904, 1019 |
| BsmBI | CGTCTC | 1 cut(s) | 397 |
| BsmFI | GGGAC | 2 cut(s) | 199, 383 |
| BsnI | GGCC | 8 cut(s) | 158, 252, 311, 599, 620, 632, 697, 784 |
| Bso31I | GGTCTC | 2 cut(s) | 13, 904 |
| BsoBI | CYCGRG | 4 cut(s) | 92, 216, 233, 930 |
| Bsp1286I | GDGCHC | 5 cut(s) | 125, 234, 757, 844, 962 |
| Bsp143I | GATC | 3 cut(s) | 243, 427, 459 |
| Bsp19I | CCATGG | 1 cut(s) | 627 |
| BspANI | GGCC | 8 cut(s) | 158, 252, 311, 599, 620, 632, 697, 784 |
| BspCNI | CTCAG | 7 cut(s) | 49, 484, 526, 739, 860, 901, 991 |
| BspDI | ATCGAT | 1 cut(s) | 666 |
| BspFNI | CGCG | 2 cut(s) | 432, 722 |
| BspLI | GGNNCC | 6 cut(s) | 31, 371, 735, 754, 822, 841 |
| BspPI | GGATC | 2 cut(s) | 435, 454 |
| BspT107I | GGYRCC | 2 cut(s) | 752, 839 |
| BspTNI | GGTCTC | 2 cut(s) | 13, 904 |
| BsrBI | CCGCTC | 6 cut(s) | 61, 88, 367, 864, 935, 968 |
| BsrI | ACTGG | 2 cut(s) | 291, 621 |
| BssECI | CCNNGG | 5 cut(s) | 216, 256, 526, 606, 627 |
| BssMI | GATC | 3 cut(s) | 243, 427, 459 |
| BssNI | GRCGYC | 1 cut(s) | 304 |
| BssSI | CACGAG | 1 cut(s) | 339 |
| BssT1I | CCWWGG | 1 cut(s) | 627 |
| Bst2BI | CACGAG | 1 cut(s) | 339 |
| Bst2UI | CCWGG | 7 cut(s) | 107, 197, 257, 308, 374, 484, 527 |
| Bst4CI | ACNGT | 4 cut(s) | 213, 323, 941, 1011 |
| BstACI | GRCGYC | 1 cut(s) | 304 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 335 |
| BstC8I | GCNNGC | 7 cut(s) | 86, 523, 720, 757, 807, 910, 970 |
| BstDSI | CCRYGG | 1 cut(s) | 627 |
| BstF5I | GGATG | 4 cut(s) | 298, 680, 733, 820 |
| BstFNI | CGCG | 2 cut(s) | 432, 722 |
| BstH2I | RGCGCY | 1 cut(s) | 780 |
| BstHHI | GCGC | 1 cut(s) | 779 |
| BstKTI | GATC | 3 cut(s) | 246, 430, 462 |
| BstMAI | GTCTC | 4 cut(s) | 13, 397, 904, 1019 |
| BstMBI | GATC | 3 cut(s) | 243, 427, 459 |
| BstNI | CCWGG | 7 cut(s) | 107, 197, 257, 308, 374, 484, 527 |
| BstSCI | CCNGG | 9 cut(s) | 105, 195, 215, 216, 255, 306, 372, 482, 525 |
| BstSLI | GKGCMC | 2 cut(s) | 757, 844 |
| BstUI | CGCG | 2 cut(s) | 432, 722 |
| BstV1I | GCAGC | 4 cut(s) | 89, 408, 541, 727 |
| BstX2I | RGATCY | 1 cut(s) | 459 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 628, 692 |
| BstYI | RGATCY | 1 cut(s) | 459 |
| Bsu15I | ATCGAT | 1 cut(s) | 666 |
| BsuRI | GGCC | 8 cut(s) | 158, 252, 311, 599, 620, 632, 697, 784 |
| BsuTUI | ATCGAT | 1 cut(s) | 666 |
| BtgI | CCRYGG | 1 cut(s) | 627 |
| BtsCI | GGATG | 4 cut(s) | 298, 680, 733, 820 |
| BtsIMutI | CAGTG | 1 cut(s) | 628 |
| Cac8I | GCNNGC | 7 cut(s) | 86, 523, 720, 757, 807, 910, 970 |
| CfoI | GCGC | 1 cut(s) | 779 |
| Cfr13I | GGNCC | 7 cut(s) | 30, 250, 370, 486, 695, 782, 975 |
| Cfr9I | CCCGGG | 1 cut(s) | 216 |
| ClaI | ATCGAT | 1 cut(s) | 666 |
| CseI | GACGC | 3 cut(s) | 13, 312, 860 |
| Csp6I | GTAC | 1 cut(s) | 942 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 798, 833 |
| CviAII | CATG | 2 cut(s) | 601, 628 |
| CviQI | GTAC | 1 cut(s) | 942 |
| DpnI | GATC | 3 cut(s) | 245, 429, 461 |
| DpnII | GATC | 3 cut(s) | 243, 427, 459 |
| EaeI | YGGCCR | 2 cut(s) | 309, 630 |
| EciI | GGCGGA | 2 cut(s) | 305, 599 |
| Ecl136II | GAGCTC | 1 cut(s) | 232 |
| Eco130I | CCWWGG | 1 cut(s) | 627 |
| Eco24I | GRGCYC | 2 cut(s) | 234, 962 |
| Eco31I | GGTCTC | 2 cut(s) | 13, 904 |
| Eco47I | GGWCC | 4 cut(s) | 30, 370, 486, 975 |
| Eco47III | AGCGCT | 1 cut(s) | 778 |
| Eco53kI | GAGCTC | 1 cut(s) | 232 |
| Eco57I | CTGAAG | 2 cut(s) | 133, 449 |
| Eco88I | CYCGRG | 4 cut(s) | 92, 216, 233, 930 |
| EcoICRI | GAGCTC | 1 cut(s) | 232 |
| EcoO109I | RGGNCCY | 2 cut(s) | 250, 370 |
| EcoRII | CCWGG | 7 cut(s) | 105, 195, 255, 306, 372, 482, 525 |
| EcoT14I | CCWWGG | 1 cut(s) | 627 |
| EcoT38I | GRGCYC | 2 cut(s) | 234, 962 |
| ErhI | CCWWGG | 1 cut(s) | 627 |
| Esp3I | CGTCTC | 1 cut(s) | 397 |
| FaeI | CATG | 2 cut(s) | 604, 631 |
| FaiI | YATR | 4 cut(s) | 413, 602, 629, 869 |
| FaqI | GGGAC | 2 cut(s) | 199, 383 |
| FatI | CATG | 2 cut(s) | 600, 627 |
| FauI | CCCGC | 7 cut(s) | 54, 360, 417, 462, 727, 745, 764 |
| FokI | GGATG | 4 cut(s) | 305, 667, 740, 827 |
| FriOI | GRGCYC | 2 cut(s) | 234, 962 |
| FspBI | CTAG | 1 cut(s) | 401 |
| GlaI | GCGC | 1 cut(s) | 778 |
| GsaI | CCCAGC | 3 cut(s) | 269, 688, 783 |
| GsuI | CTGGAG | 4 cut(s) | 128, 239, 395, 527 |
| HaeII | RGCGCY | 1 cut(s) | 780 |
| HaeIII | GGCC | 8 cut(s) | 158, 252, 311, 599, 620, 632, 697, 784 |
| HapII | CCGG | 1 cut(s) | 217 |
| HgaI | GACGC | 3 cut(s) | 13, 312, 860 |
| HhaI | GCGC | 1 cut(s) | 779 |
| Hin1I | GRCGYC | 1 cut(s) | 304 |
| Hin1II | CATG | 2 cut(s) | 604, 631 |
| Hin6I | GCGC | 1 cut(s) | 777 |
| HinP1I | GCGC | 1 cut(s) | 777 |
| HinfI | GANTC | 2 cut(s) | 649, 884 |
| HpaII | CCGG | 1 cut(s) | 217 |
| HphI | GGTGA | 1 cut(s) | 508 |
| Hpy188I | TCNGA | 5 cut(s) | 654, 850, 895, 984, 1000 |
| Hpy99I | CGWCG | 1 cut(s) | 306 |
| HpyAV | CCTTC | 5 cut(s) | 39, 157, 473, 589, 610 |
| HpyCH4III | ACNGT | 4 cut(s) | 213, 323, 941, 1011 |
| HpyCH4IV | ACGT | 1 cut(s) | 544 |
| HpyCH4V | TGCA | 3 cut(s) | 329, 713, 800 |
| HpySE526I | ACGT | 1 cut(s) | 544 |
| Hsp92I | GRCGYC | 1 cut(s) | 304 |
| Hsp92II | CATG | 2 cut(s) | 604, 631 |
| HspAI | GCGC | 1 cut(s) | 777 |
| Kzo9I | GATC | 3 cut(s) | 243, 427, 459 |
| LmnI | GCTCC | 5 cut(s) | 229, 262, 298, 376, 530 |
| Lsp1109I | GCAGC | 4 cut(s) | 89, 408, 541, 727 |
| LweI | GCATC | 3 cut(s) | 316, 325, 689 |
| MaeI | CTAG | 1 cut(s) | 401 |
| MaeII | ACGT | 1 cut(s) | 544 |
| MalI | GATC | 3 cut(s) | 245, 429, 461 |
| MbiI | CCGCTC | 6 cut(s) | 61, 88, 367, 864, 935, 968 |
| MboI | GATC | 3 cut(s) | 243, 427, 459 |
| MboII | GAAGA | 3 cut(s) | 54, 64, 511 |
| MfeI | CAATTG | 1 cut(s) | 578 |
| MflI | RGATCY | 1 cut(s) | 459 |
| MhlI | GDGCHC | 5 cut(s) | 125, 234, 757, 844, 962 |
| MlsI | TGGCCA | 2 cut(s) | 311, 632 |
| MluCI | AATT | 4 cut(s) | 188, 347, 578, 641 |
| MluNI | TGGCCA | 2 cut(s) | 311, 632 |
| Mox20I | TGGCCA | 2 cut(s) | 311, 632 |
| MscI | TGGCCA | 2 cut(s) | 311, 632 |
| MseI | TTAA | 3 cut(s) | 135, 573, 950 |
| MslI | CAYNNNNRTG | 1 cut(s) | 950 |
| Msp20I | TGGCCA | 2 cut(s) | 311, 632 |
| MspA1I | CMGCKG | 6 cut(s) | 39, 469, 491, 560, 740, 746 |
| MspI | CCGG | 1 cut(s) | 217 |
| MspR9I | CCNGG | 9 cut(s) | 107, 197, 217, 218, 257, 308, 374, 484, 527 |
| MunI | CAATTG | 1 cut(s) | 578 |
| MvaI | CCWGG | 7 cut(s) | 107, 197, 257, 308, 374, 484, 527 |
| MvnI | CGCG | 2 cut(s) | 432, 722 |
| NciI | CCSGG | 2 cut(s) | 217, 218 |
| NcoI | CCATGG | 1 cut(s) | 627 |
| NdeII | GATC | 3 cut(s) | 243, 427, 459 |
| NlaIII | CATG | 2 cut(s) | 604, 631 |
| NlaIV | GGNNCC | 6 cut(s) | 31, 371, 735, 754, 822, 841 |
| NmeAIII | GCCGAG | 2 cut(s) | 134, 981 |
| PfeI | GAWTC | 2 cut(s) | 649, 884 |
| PflFI | GACNNNGTC | 1 cut(s) | 389 |
| PpuMI | RGGWCCY | 1 cut(s) | 370 |
| Psp124BI | GAGCTC | 1 cut(s) | 234 |
| Psp5II | RGGWCCY | 1 cut(s) | 370 |
| Psp6I | CCWGG | 7 cut(s) | 105, 195, 255, 306, 372, 482, 525 |
| PspFI | CCCAGC | 3 cut(s) | 265, 684, 779 |
| PspGI | CCWGG | 7 cut(s) | 105, 195, 255, 306, 372, 482, 525 |
| PspN4I | GGNNCC | 6 cut(s) | 31, 371, 735, 754, 822, 841 |
| PspPI | GGNCC | 7 cut(s) | 30, 250, 370, 486, 695, 782, 975 |
| PspPPI | RGGWCCY | 1 cut(s) | 370 |
| PsuI | RGATCY | 1 cut(s) | 459 |
| PsyI | GACNNNGTC | 1 cut(s) | 389 |
| RsaI | GTAC | 1 cut(s) | 943 |
| RsaNI | GTAC | 1 cut(s) | 942 |
| RseI | CAYNNNNRTG | 1 cut(s) | 950 |
| SacI | GAGCTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 3 cut(s) | 135, 573, 950 |
| Sau3AI | GATC | 3 cut(s) | 243, 427, 459 |
| Sau96I | GGNCC | 7 cut(s) | 30, 250, 370, 486, 695, 782, 975 |
| ScrFI | CCNGG | 9 cut(s) | 107, 197, 217, 218, 257, 308, 374, 484, 527 |
| SduI | GDGCHC | 5 cut(s) | 125, 234, 757, 844, 962 |
| SfaNI | GCATC | 3 cut(s) | 316, 325, 689 |
| SinI | GGWCC | 4 cut(s) | 30, 370, 486, 975 |
| SmaI | CCCGGG | 1 cut(s) | 218 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 950 |
| Sse9I | AATT | 4 cut(s) | 188, 347, 578, 641 |
| SspMI | CTAG | 1 cut(s) | 401 |
| SstI | GAGCTC | 1 cut(s) | 234 |
| StyD4I | CCNGG | 9 cut(s) | 105, 195, 215, 216, 255, 306, 372, 482, 525 |
| StyI | CCWWGG | 1 cut(s) | 627 |
| TaaI | ACNGT | 4 cut(s) | 213, 323, 941, 1011 |
| TaiI | ACGT | 1 cut(s) | 547 |
| TaqI | TCGA | 1 cut(s) | 666 |
| TaqII | GACCGA | 1 cut(s) | 620 |
| TasI | AATT | 4 cut(s) | 188, 347, 578, 641 |
| TauI | GCSGC | 9 cut(s) | 91, 206, 209, 551, 554, 560, 614, 746, 771 |
| TfiI | GAWTC | 2 cut(s) | 649, 884 |
| Tru1I | TTAA | 3 cut(s) | 135, 573, 950 |
| Tru9I | TTAA | 3 cut(s) | 135, 573, 950 |
| TscAI | CASTG | 1 cut(s) | 628 |
| TseI | GCWGC | 4 cut(s) | 102, 421, 554, 740 |
| TspMI | CCCGGG | 1 cut(s) | 216 |
| TspRI | CASTG | 1 cut(s) | 628 |
| Tth111I | GACNNNGTC | 1 cut(s) | 389 |
| VpaK11BI | GGWCC | 4 cut(s) | 30, 370, 486, 975 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 634 |
| XmaI | CCCGGG | 1 cut(s) | 216 |
| XspI | CTAG | 1 cut(s) | 401 |