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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 142 |
| AccBSI | CCGCTC | 1 cut(s) | 385 |
| AccII | CGCG | 2 cut(s) | 155, 348 |
| AcoI | YGGCCR | 2 cut(s) | 315, 363 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 102 |
| AflIII | ACRYGT | 1 cut(s) | 394 |
| AgsI | TTSAA | 1 cut(s) | 38 |
| AleI | CACNNNNGTG | 1 cut(s) | 15 |
| AluBI | AGCT | 2 cut(s) | 238, 355 |
| AluI | AGCT | 2 cut(s) | 238, 355 |
| Alw26I | GTCTC | 4 cut(s) | 150, 263, 283, 403 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 313 |
| AoxI | GGCC | 4 cut(s) | 183, 201, 315, 363 |
| ApaI | GGGCCC | 1 cut(s) | 187 |
| ApeKI | GCWGC | 1 cut(s) | 212 |
| AspLEI | GCGC | 2 cut(s) | 118, 132 |
| AspS9I | GGNCC | 5 cut(s) | 20, 93, 183, 184, 202 |
| AsuHPI | GGTGA | 1 cut(s) | 97 |
| AvaII | GGWCC | 2 cut(s) | 20, 93 |
| BaeGI | GKGCMC | 1 cut(s) | 187 |
| BalI | TGGCCA | 2 cut(s) | 317, 365 |
| BanII | GRGCYC | 1 cut(s) | 187 |
| BbsI | GAAGAC | 1 cut(s) | 227 |
| BbvCI | CCTCAGC | 1 cut(s) | 239 |
| BbvI | GCAGC | 1 cut(s) | 199 |
| BccI | CCATC | 1 cut(s) | 374 |
| BceAI | ACGGC | 2 cut(s) | 153, 174 |
| BcoDI | GTCTC | 4 cut(s) | 150, 263, 283, 403 |
| BfoI | RGCGCY | 2 cut(s) | 119, 133 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 209 |
| BisI | GCNGC | 3 cut(s) | 213, 228, 349 |
| BlsI | GCNGC | 3 cut(s) | 214, 229, 350 |
| Bme18I | GGWCC | 2 cut(s) | 20, 93 |
| BmgT120I | GGNCC | 5 cut(s) | 20, 93, 183, 184, 202 |
| BmiI | GGNNCC | 4 cut(s) | 72, 107, 184, 185 |
| BpiI | GAAGAC | 1 cut(s) | 227 |
| BpmI | CTGGAG | 2 cut(s) | 140, 245 |
| Bpu10I | CCTNAGC | 1 cut(s) | 239 |
| BsaI | GGTCTC | 1 cut(s) | 263 |
| BsaJI | CCNNGG | 2 cut(s) | 318, 346 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 156, 186 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 102 |
| Bse118I | RCCGGY | 1 cut(s) | 40 |
| Bse1I | ACTGG | 2 cut(s) | 77, 297 |
| BseDI | CCNNGG | 2 cut(s) | 318, 346 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 102 |
| BseMII | CTCAG | 2 cut(s) | 132, 230 |
| BseNI | ACTGG | 2 cut(s) | 77, 297 |
| BseSI | GKGCMC | 1 cut(s) | 187 |
| BseXI | GCAGC | 1 cut(s) | 199 |
| BseYI | CCCAGC | 1 cut(s) | 101 |
| Bsh1236I | CGCG | 2 cut(s) | 155, 348 |
| BshFI | GGCC | 4 cut(s) | 185, 203, 317, 365 |
| BsiSI | CCGG | 1 cut(s) | 41 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 102 |
| BsmAI | GTCTC | 4 cut(s) | 150, 263, 283, 403 |
| BsnI | GGCC | 4 cut(s) | 185, 203, 317, 365 |
| Bso31I | GGTCTC | 1 cut(s) | 263 |
| Bsp120I | GGGCCC | 1 cut(s) | 183 |
| Bsp1286I | GDGCHC | 1 cut(s) | 187 |
| Bsp143I | GATC | 1 cut(s) | 417 |
| BspANI | GGCC | 4 cut(s) | 185, 203, 317, 365 |
| BspCNI | CTCAG | 2 cut(s) | 133, 231 |
| BspFNI | CGCG | 2 cut(s) | 155, 348 |
| BspLI | GGNNCC | 4 cut(s) | 72, 107, 184, 185 |
| BspTNI | GGTCTC | 1 cut(s) | 263 |
| BsrBI | CCGCTC | 1 cut(s) | 385 |
| BsrFI | RCCGGY | 1 cut(s) | 40 |
| BsrI | ACTGG | 2 cut(s) | 77, 297 |
| BssAI | RCCGGY | 1 cut(s) | 40 |
| BssECI | CCNNGG | 2 cut(s) | 318, 346 |
| BssMI | GATC | 1 cut(s) | 417 |
| BssT1I | CCWWGG | 1 cut(s) | 318 |
| Bst4CI | ACNGT | 1 cut(s) | 58 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 187, 315, 353 |
| BstDEI | CTNAG | 2 cut(s) | 141, 239 |
| BstDSI | CCRYGG | 1 cut(s) | 346 |
| BstFNI | CGCG | 2 cut(s) | 155, 348 |
| BstH2I | RGCGCY | 2 cut(s) | 119, 133 |
| BstHHI | GCGC | 2 cut(s) | 118, 132 |
| BstKTI | GATC | 1 cut(s) | 420 |
| BstMAI | GTCTC | 4 cut(s) | 150, 263, 283, 403 |
| BstMBI | GATC | 1 cut(s) | 417 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 209 |
| BstNSI | RCATGY | 1 cut(s) | 398 |
| BstSLI | GKGCMC | 1 cut(s) | 187 |
| BstUI | CGCG | 2 cut(s) | 155, 348 |
| BstV1I | GCAGC | 1 cut(s) | 199 |
| BstV2I | GAAGAC | 1 cut(s) | 227 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 17 |
| BsuRI | GGCC | 4 cut(s) | 185, 203, 317, 365 |
| BtgI | CCRYGG | 1 cut(s) | 346 |
| BtsIMutI | CAGTG | 2 cut(s) | 54, 84 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 187, 315, 353 |
| CaiI | CAGNNNCTG | 1 cut(s) | 313 |
| CfoI | GCGC | 2 cut(s) | 118, 132 |
| Cfr10I | RCCGGY | 1 cut(s) | 40 |
| Cfr13I | GGNCC | 5 cut(s) | 20, 93, 183, 184, 202 |
| Cfr42I | CCGCGG | 1 cut(s) | 349 |
| CseI | GACGC | 1 cut(s) | 161 |
| CviAII | CATG | 1 cut(s) | 395 |
| DdeI | CTNAG | 2 cut(s) | 141, 239 |
| DpnI | GATC | 1 cut(s) | 419 |
| DpnII | GATC | 1 cut(s) | 417 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 142 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 142 |
| EaeI | YGGCCR | 2 cut(s) | 315, 363 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| EciI | GGCGGA | 3 cut(s) | 59, 290, 311 |
| Eco130I | CCWWGG | 1 cut(s) | 318 |
| Eco24I | GRGCYC | 1 cut(s) | 187 |
| Eco31I | GGTCTC | 1 cut(s) | 263 |
| Eco47I | GGWCC | 2 cut(s) | 20, 93 |
| EcoO109I | RGGNCCY | 1 cut(s) | 183 |
| EcoT14I | CCWWGG | 1 cut(s) | 318 |
| EcoT38I | GRGCYC | 1 cut(s) | 187 |
| ErhI | CCWWGG | 1 cut(s) | 318 |
| FaeI | CATG | 1 cut(s) | 398 |
| FaiI | YATR | 2 cut(s) | 336, 396 |
| FatI | CATG | 1 cut(s) | 394 |
| FauI | CCCGC | 2 cut(s) | 194, 223 |
| Fnu4HI | GCNGC | 3 cut(s) | 213, 228, 349 |
| FriOI | GRGCYC | 1 cut(s) | 187 |
| Fsp4HI | GCNGC | 3 cut(s) | 213, 228, 349 |
| GlaI | GCGC | 2 cut(s) | 117, 131 |
| GluI | GCNGC | 3 cut(s) | 213, 228, 349 |
| GsaI | CCCAGC | 1 cut(s) | 105 |
| GsuI | CTGGAG | 2 cut(s) | 140, 245 |
| HaeII | RGCGCY | 2 cut(s) | 119, 133 |
| HaeIII | GGCC | 4 cut(s) | 185, 203, 317, 365 |
| HapII | CCGG | 1 cut(s) | 41 |
| HgaI | GACGC | 1 cut(s) | 161 |
| HhaI | GCGC | 2 cut(s) | 118, 132 |
| Hin1II | CATG | 1 cut(s) | 398 |
| Hin6I | GCGC | 2 cut(s) | 116, 130 |
| HinP1I | GCGC | 2 cut(s) | 116, 130 |
| HinfI | GANTC | 1 cut(s) | 143 |
| HpaII | CCGG | 1 cut(s) | 41 |
| HphI | GGTGA | 1 cut(s) | 97 |
| Hpy188I | TCNGA | 3 cut(s) | 27, 195, 254 |
| Hpy188III | TCNNGA | 2 cut(s) | 149, 262 |
| Hpy99I | CGWCG | 1 cut(s) | 139 |
| HpyAV | CCTTC | 2 cut(s) | 22, 193 |
| HpyCH4III | ACNGT | 1 cut(s) | 58 |
| HpyCH4V | TGCA | 1 cut(s) | 338 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 209 |
| HpyF3I | CTNAG | 2 cut(s) | 141, 239 |
| Hsp92II | CATG | 1 cut(s) | 398 |
| HspAI | GCGC | 2 cut(s) | 116, 130 |
| KspI | CCGCGG | 1 cut(s) | 349 |
| Kzo9I | GATC | 1 cut(s) | 417 |
| LmnI | GCTCC | 2 cut(s) | 382, 409 |
| Lsp1109I | GCAGC | 1 cut(s) | 199 |
| MaeIII | GTNAC | 5 cut(s) | 52, 58, 85, 329, 374 |
| MalI | GATC | 1 cut(s) | 419 |
| MbiI | CCGCTC | 1 cut(s) | 385 |
| MboI | GATC | 1 cut(s) | 417 |
| MboII | GAAGA | 5 cut(s) | 59, 170, 208, 232, 257 |
| MhlI | GDGCHC | 1 cut(s) | 187 |
| MlsI | TGGCCA | 2 cut(s) | 317, 365 |
| MluNI | TGGCCA | 2 cut(s) | 317, 365 |
| MlyI | GAGTC | 1 cut(s) | 152 |
| MmeI | TCCRAC | 1 cut(s) | 387 |
| Mox20I | TGGCCA | 2 cut(s) | 317, 365 |
| MscI | TGGCCA | 2 cut(s) | 317, 365 |
| MslI | CAYNNNNRTG | 1 cut(s) | 15 |
| Msp20I | TGGCCA | 2 cut(s) | 317, 365 |
| MspA1I | CMGCKG | 2 cut(s) | 101, 348 |
| MspI | CCGG | 1 cut(s) | 41 |
| MvnI | CGCG | 2 cut(s) | 155, 348 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 209 |
| NdeII | GATC | 1 cut(s) | 417 |
| NlaIII | CATG | 1 cut(s) | 398 |
| NlaIV | GGNNCC | 4 cut(s) | 72, 107, 184, 185 |
| NmuCI | GTSAC | 5 cut(s) | 52, 58, 85, 329, 374 |
| NspI | RCATGY | 1 cut(s) | 398 |
| OliI | CACNNNNGTG | 1 cut(s) | 15 |
| PciI | ACATGT | 1 cut(s) | 394 |
| PkrI | GCNGC | 3 cut(s) | 214, 229, 350 |
| PleI | GAGTC | 1 cut(s) | 151 |
| PpsI | GAGTC | 1 cut(s) | 151 |
| PscI | ACATGT | 1 cut(s) | 394 |
| PspFI | CCCAGC | 1 cut(s) | 101 |
| PspN4I | GGNNCC | 4 cut(s) | 72, 107, 184, 185 |
| PspOMI | GGGCCC | 1 cut(s) | 183 |
| PspPI | GGNCC | 5 cut(s) | 20, 93, 183, 184, 202 |
| PstNI | CAGNNNCTG | 1 cut(s) | 313 |
| RseI | CAYNNNNRTG | 1 cut(s) | 15 |
| SacII | CCGCGG | 1 cut(s) | 349 |
| SatI | GCNGC | 3 cut(s) | 213, 228, 349 |
| Sau3AI | GATC | 1 cut(s) | 417 |
| Sau96I | GGNCC | 5 cut(s) | 20, 93, 183, 184, 202 |
| SchI | GAGTC | 1 cut(s) | 152 |
| SduI | GDGCHC | 1 cut(s) | 187 |
| SetI | ASST | 5 cut(s) | 33, 240, 259, 303, 357 |
| Sfr303I | CCGCGG | 1 cut(s) | 349 |
| SgrBI | CCGCGG | 1 cut(s) | 349 |
| SinI | GGWCC | 2 cut(s) | 20, 93 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 15 |
| StyI | CCWWGG | 1 cut(s) | 318 |
| TaaI | ACNGT | 1 cut(s) | 58 |
| TaqI | TCGA | 1 cut(s) | 303 |
| TauI | GCSGC | 2 cut(s) | 230, 351 |
| TscAI | CASTG | 2 cut(s) | 61, 84 |
| TseFI | GTSAC | 5 cut(s) | 52, 58, 85, 329, 374 |
| TseI | GCWGC | 1 cut(s) | 212 |
| Tsp45I | GTSAC | 5 cut(s) | 52, 58, 85, 329, 374 |
| TspDTI | ATGAA | 1 cut(s) | 405 |
| TspRI | CASTG | 2 cut(s) | 61, 84 |
| VpaK11BI | GGWCC | 2 cut(s) | 20, 93 |
| XceI | RCATGY | 1 cut(s) | 398 |