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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 29, 570, 663, 786 |
| AccBSI | CCGCTC | 4 cut(s) | 92, 119, 332, 461 |
| AccI | GTMKAC | 2 cut(s) | 507, 550 |
| AccII | CGCG | 8 cut(s) | 69, 152, 373, 447, 606, 749, 815, 817 |
| AclWI | GGATC | 2 cut(s) | 409, 836 |
| AcoI | YGGCCR | 1 cut(s) | 388 |
| AcuI | CTGAAG | 1 cut(s) | 164 |
| AcyI | GRCGYC | 3 cut(s) | 30, 234, 571 |
| AfaI | GTAC | 2 cut(s) | 66, 773 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 254, 397, 660 |
| AflIII | ACRYGT | 3 cut(s) | 419, 553, 742 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 802 |
| AjiI | CACGTC | 1 cut(s) | 743 |
| AjnI | CCWGG | 1 cut(s) | 226 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 81, 113 |
| AluBI | AGCT | 5 cut(s) | 184, 263, 380, 485, 591 |
| AluI | AGCT | 5 cut(s) | 184, 263, 380, 485, 591 |
| Alw21I | GWGCWC | 2 cut(s) | 265, 624 |
| Alw26I | GTCTC | 5 cut(s) | 288, 308, 428, 627, 789 |
| AlwI | GGATC | 2 cut(s) | 409, 836 |
| Ama87I | CYCGRG | 2 cut(s) | 654, 775 |
| AoxI | GGCC | 2 cut(s) | 304, 388 |
| ApeKI | GCWGC | 6 cut(s) | 242, 449, 452, 497, 676, 767 |
| AspS9I | GGNCC | 2 cut(s) | 709, 820 |
| AsuC2I | CCSGG | 3 cut(s) | 248, 776, 777 |
| AvaI | CYCGRG | 2 cut(s) | 654, 775 |
| AvaII | GGWCC | 2 cut(s) | 709, 820 |
| BaeGI | GKGCMC | 1 cut(s) | 668 |
| BanI | GGYRCC | 4 cut(s) | 29, 570, 663, 786 |
| BanII | GRGCYC | 1 cut(s) | 265 |
| Bbv12I | GWGCWC | 2 cut(s) | 265, 624 |
| BbvI | GCAGC | 6 cut(s) | 254, 436, 439, 509, 688, 779 |
| BccI | CCATC | 4 cut(s) | 115, 399, 582, 777 |
| BceAI | ACGGC | 3 cut(s) | 21, 175, 627 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 645, 679 |
| BciT130I | CCWGG | 1 cut(s) | 228 |
| BcnI | CCSGG | 3 cut(s) | 248, 776, 777 |
| BcoDI | GTCTC | 5 cut(s) | 288, 308, 428, 627, 789 |
| BfmI | CTRYAG | 1 cut(s) | 453 |
| BfoI | RGCGCY | 2 cut(s) | 33, 574 |
| Bme1390I | CCNGG | 4 cut(s) | 228, 248, 776, 777 |
| Bme18I | GGWCC | 2 cut(s) | 709, 820 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 802 |
| BmeT110I | CYCGRG | 2 cut(s) | 654, 775 |
| BmgBI | CACGTC | 1 cut(s) | 743 |
| BmgT120I | GGNCC | 2 cut(s) | 709, 820 |
| BmiI | GGNNCC | 7 cut(s) | 31, 572, 665, 710, 711, 788, 821 |
| BmrFI | CCNGG | 4 cut(s) | 228, 248, 776, 777 |
| BmrI | ACTGGG | 1 cut(s) | 796 |
| BmsI | GCATC | 2 cut(s) | 356, 860 |
| BmuI | ACTGGG | 1 cut(s) | 796 |
| BpmI | CTGGAG | 2 cut(s) | 270, 426 |
| Bpu10I | CCTNAGC | 1 cut(s) | 264 |
| BpuMI | CCSGG | 3 cut(s) | 248, 776, 777 |
| BsaHI | GRCGYC | 3 cut(s) | 30, 234, 571 |
| BsaI | GGTCTC | 2 cut(s) | 288, 789 |
| BsaJI | CCNNGG | 5 cut(s) | 246, 307, 371, 655, 775 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 81, 111 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 254, 397, 660 |
| Bse1I | ACTGG | 4 cut(s) | 322, 343, 523, 802 |
| BseBI | CCWGG | 1 cut(s) | 228 |
| BseDI | CCNNGG | 5 cut(s) | 246, 307, 371, 655, 775 |
| BseGI | GGATG | 4 cut(s) | 371, 391, 527, 788 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 254, 397, 660 |
| BseMII | CTCAG | 1 cut(s) | 278 |
| BseNI | ACTGG | 4 cut(s) | 322, 343, 523, 802 |
| BsePI | GCGCGC | 1 cut(s) | 813 |
| BseSI | GKGCMC | 1 cut(s) | 668 |
| BseXI | GCAGC | 6 cut(s) | 254, 436, 439, 509, 688, 779 |
| BseYI | CCCAGC | 1 cut(s) | 536 |
| BsgI | GTGCAG | 1 cut(s) | 516 |
| Bsh1236I | CGCG | 8 cut(s) | 69, 152, 373, 447, 606, 749, 815, 817 |
| BshFI | GGCC | 2 cut(s) | 306, 390 |
| BshNI | GGYRCC | 4 cut(s) | 29, 570, 663, 786 |
| BsiHKAI | GWGCWC | 2 cut(s) | 265, 624 |
| BsiHKCI | CYCGRG | 2 cut(s) | 654, 775 |
| BsiSI | CCGG | 3 cut(s) | 248, 395, 776 |
| BslFI | GGGAC | 2 cut(s) | 349, 695 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 254, 397, 660 |
| BsmAI | GTCTC | 5 cut(s) | 288, 308, 428, 627, 789 |
| BsmFI | GGGAC | 2 cut(s) | 349, 695 |
| BsnI | GGCC | 2 cut(s) | 306, 390 |
| Bso31I | GGTCTC | 2 cut(s) | 288, 789 |
| BsoBI | CYCGRG | 2 cut(s) | 654, 775 |
| Bsp1286I | GDGCHC | 3 cut(s) | 265, 624, 668 |
| Bsp143I | GATC | 5 cut(s) | 44, 401, 442, 824, 841 |
| BspANI | GGCC | 2 cut(s) | 306, 390 |
| BspCNI | CTCAG | 1 cut(s) | 277 |
| BspFNI | CGCG | 8 cut(s) | 69, 152, 373, 447, 606, 749, 815, 817 |
| BspHI | TCATGA | 1 cut(s) | 76 |
| BspLI | GGNNCC | 7 cut(s) | 31, 572, 665, 710, 711, 788, 821 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspPI | GGATC | 2 cut(s) | 409, 836 |
| BspT107I | GGYRCC | 4 cut(s) | 29, 570, 663, 786 |
| BspTNI | GGTCTC | 2 cut(s) | 288, 789 |
| BsrBI | CCGCTC | 4 cut(s) | 92, 119, 332, 461 |
| BsrI | ACTGG | 4 cut(s) | 322, 343, 523, 802 |
| BssECI | CCNNGG | 5 cut(s) | 246, 307, 371, 655, 775 |
| BssHII | GCGCGC | 1 cut(s) | 813 |
| BssMI | GATC | 5 cut(s) | 44, 401, 442, 824, 841 |
| BssNI | GRCGYC | 3 cut(s) | 30, 234, 571 |
| BssT1I | CCWWGG | 1 cut(s) | 307 |
| Bst2UI | CCWGG | 1 cut(s) | 228 |
| BstACI | GRCGYC | 3 cut(s) | 30, 234, 571 |
| BstC8I | GCNNGC | 7 cut(s) | 34, 117, 143, 371, 378, 751, 815 |
| BstDEI | CTNAG | 2 cut(s) | 238, 264 |
| BstDSI | CCRYGG | 1 cut(s) | 371 |
| BstF5I | GGATG | 4 cut(s) | 371, 391, 527, 788 |
| BstFNI | CGCG | 8 cut(s) | 69, 152, 373, 447, 606, 749, 815, 817 |
| BstH2I | RGCGCY | 2 cut(s) | 33, 574 |
| BstKTI | GATC | 5 cut(s) | 47, 404, 445, 827, 844 |
| BstMAI | GTCTC | 5 cut(s) | 288, 308, 428, 627, 789 |
| BstMBI | GATC | 5 cut(s) | 44, 401, 442, 824, 841 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 66, 151, 458, 605, 648, 685 |
| BstNI | CCWGG | 1 cut(s) | 228 |
| BstNSI | RCATGY | 2 cut(s) | 423, 557 |
| BstSCI | CCNGG | 4 cut(s) | 226, 246, 774, 775 |
| BstSFI | CTRYAG | 1 cut(s) | 453 |
| BstSLI | GKGCMC | 1 cut(s) | 668 |
| BstUI | CGCG | 8 cut(s) | 69, 152, 373, 447, 606, 749, 815, 817 |
| BstV1I | GCAGC | 6 cut(s) | 254, 436, 439, 509, 688, 779 |
| BstX2I | RGATCY | 1 cut(s) | 401 |
| BstYI | RGATCY | 1 cut(s) | 401 |
| BsuRI | GGCC | 2 cut(s) | 306, 390 |
| BtgI | CCRYGG | 1 cut(s) | 371 |
| BtrI | CACGTC | 1 cut(s) | 743 |
| BtsCI | GGATG | 4 cut(s) | 371, 391, 527, 788 |
| BtsI | GCAGTG | 1 cut(s) | 19 |
| BtsIMutI | CAGTG | 3 cut(s) | 19, 47, 856 |
| Cac8I | GCNNGC | 7 cut(s) | 34, 117, 143, 371, 378, 751, 815 |
| CciI | TCATGA | 1 cut(s) | 76 |
| Cfr13I | GGNCC | 2 cut(s) | 709, 820 |
| Cfr42I | CCGCGG | 1 cut(s) | 374 |
| Cfr9I | CCCGGG | 1 cut(s) | 775 |
| CseI | GACGC | 2 cut(s) | 223, 612 |
| Csp6I | GTAC | 2 cut(s) | 65, 772 |
| CviAII | CATG | 4 cut(s) | 77, 216, 420, 554 |
| CviQI | GTAC | 2 cut(s) | 65, 772 |
| DdeI | CTNAG | 2 cut(s) | 238, 264 |
| DinI | GGCGCC | 2 cut(s) | 31, 572 |
| DpnI | GATC | 5 cut(s) | 46, 403, 444, 826, 843 |
| DpnII | GATC | 5 cut(s) | 44, 401, 442, 824, 841 |
| DriI | GACNNNNNGTC | 1 cut(s) | 802 |
| EaeI | YGGCCR | 1 cut(s) | 388 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 802 |
| EciI | GGCGGA | 6 cut(s) | 315, 336, 363, 578, 706, 795 |
| Ecl136II | GAGCTC | 1 cut(s) | 263 |
| Eco130I | CCWWGG | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 265 |
| Eco31I | GGTCTC | 2 cut(s) | 288, 789 |
| Eco47I | GGWCC | 2 cut(s) | 709, 820 |
| Eco53kI | GAGCTC | 1 cut(s) | 263 |
| Eco57I | CTGAAG | 1 cut(s) | 164 |
| Eco88I | CYCGRG | 2 cut(s) | 654, 775 |
| EcoICRI | GAGCTC | 1 cut(s) | 263 |
| EcoO109I | RGGNCCY | 1 cut(s) | 709 |
| EcoRII | CCWGG | 1 cut(s) | 226 |
| EcoT14I | CCWWGG | 1 cut(s) | 307 |
| EcoT38I | GRGCYC | 1 cut(s) | 265 |
| EgeI | GGCGCC | 2 cut(s) | 31, 572 |
| EheI | GGCGCC | 2 cut(s) | 31, 572 |
| ErhI | CCWWGG | 1 cut(s) | 307 |
| FaeI | CATG | 4 cut(s) | 80, 219, 423, 557 |
| FaqI | GGGAC | 2 cut(s) | 349, 695 |
| FatI | CATG | 4 cut(s) | 76, 215, 419, 553 |
| FauI | CCCGC | 9 cut(s) | 41, 85, 134, 200, 325, 378, 391, 493, 810 |
| FauNDI | CATATG | 1 cut(s) | 697 |
| FblI | GTMKAC | 2 cut(s) | 507, 550 |
| FokI | GGATG | 4 cut(s) | 378, 378, 534, 795 |
| FriOI | GRGCYC | 1 cut(s) | 265 |
| GsaI | CCCAGC | 1 cut(s) | 540 |
| GsuI | CTGGAG | 2 cut(s) | 270, 426 |
| HaeII | RGCGCY | 2 cut(s) | 33, 574 |
| HaeIII | GGCC | 2 cut(s) | 306, 390 |
| HapII | CCGG | 3 cut(s) | 248, 395, 776 |
| HgaI | GACGC | 2 cut(s) | 223, 612 |
| Hin1I | GRCGYC | 3 cut(s) | 30, 234, 571 |
| Hin1II | CATG | 4 cut(s) | 80, 219, 423, 557 |
| HindIII | AAGCTT | 2 cut(s) | 378, 589 |
| HinfI | GANTC | 3 cut(s) | 51, 504, 833 |
| HpaII | CCGG | 3 cut(s) | 248, 395, 776 |
| Hpy166II | GTNNAC | 2 cut(s) | 508, 551 |
| Hpy188I | TCNGA | 4 cut(s) | 279, 740, 808, 824 |
| Hpy188III | TCNNGA | 5 cut(s) | 48, 77, 287, 405, 654 |
| Hpy8I | GTNNAC | 2 cut(s) | 508, 551 |
| Hpy99I | CGWCG | 2 cut(s) | 161, 740 |
| HpyAV | CCTTC | 5 cut(s) | 65, 188, 560, 699, 870 |
| HpyCH4IV | ACGT | 2 cut(s) | 547, 742 |
| HpyCH4V | TGCA | 3 cut(s) | 12, 455, 497 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 66, 151, 458, 605, 648, 685 |
| HpyF3I | CTNAG | 2 cut(s) | 238, 264 |
| HpySE526I | ACGT | 2 cut(s) | 547, 742 |
| Hsp92I | GRCGYC | 3 cut(s) | 30, 234, 571 |
| Hsp92II | CATG | 4 cut(s) | 80, 219, 423, 557 |
| KasI | GGCGCC | 2 cut(s) | 29, 570 |
| KflI | GGGWCCC | 1 cut(s) | 709 |
| KspI | CCGCGG | 1 cut(s) | 374 |
| Kzo9I | GATC | 5 cut(s) | 44, 401, 442, 824, 841 |
| LmnI | GCTCC | 3 cut(s) | 89, 458, 656 |
| Lsp1109I | GCAGC | 6 cut(s) | 254, 436, 439, 509, 688, 779 |
| LweI | GCATC | 2 cut(s) | 356, 860 |
| MaeII | ACGT | 2 cut(s) | 547, 742 |
| MaeIII | GTNAC | 2 cut(s) | 211, 834 |
| MalI | GATC | 5 cut(s) | 46, 403, 444, 826, 843 |
| MbiI | CCGCTC | 4 cut(s) | 92, 119, 332, 461 |
| MboI | GATC | 5 cut(s) | 44, 401, 442, 824, 841 |
| MboII | GAAGA | 1 cut(s) | 879 |
| MfeI | CAATTG | 1 cut(s) | 163 |
| MflI | RGATCY | 1 cut(s) | 401 |
| MhlI | GDGCHC | 3 cut(s) | 265, 624, 668 |
| MluCI | AATT | 1 cut(s) | 163 |
| Mly113I | GGCGCC | 2 cut(s) | 30, 571 |
| MlyI | GAGTC | 3 cut(s) | 45, 513, 842 |
| MmeI | TCCRAC | 2 cut(s) | 718, 831 |
| MseI | TTAA | 1 cut(s) | 382 |
| MslI | CAYNNNNRTG | 1 cut(s) | 492 |
| MspA1I | CMGCKG | 3 cut(s) | 373, 500, 679 |
| MspI | CCGG | 3 cut(s) | 248, 395, 776 |
| MspR9I | CCNGG | 4 cut(s) | 228, 248, 776, 777 |
| MunI | CAATTG | 1 cut(s) | 163 |
| MvaI | CCWGG | 1 cut(s) | 228 |
| MvnI | CGCG | 8 cut(s) | 69, 152, 373, 447, 606, 749, 815, 817 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 66, 151, 458, 605, 648, 685 |
| NarI | GGCGCC | 2 cut(s) | 30, 571 |
| NciI | CCSGG | 3 cut(s) | 248, 776, 777 |
| NdeI | CATATG | 1 cut(s) | 697 |
| NdeII | GATC | 5 cut(s) | 44, 401, 442, 824, 841 |
| NlaIII | CATG | 4 cut(s) | 80, 219, 423, 557 |
| NlaIV | GGNNCC | 7 cut(s) | 31, 572, 665, 710, 711, 788, 821 |
| NmeAIII | GCCGAG | 2 cut(s) | 86, 165 |
| NmuCI | GTSAC | 1 cut(s) | 834 |
| NspI | RCATGY | 2 cut(s) | 423, 557 |
| PagI | TCATGA | 1 cut(s) | 76 |
| PauI | GCGCGC | 1 cut(s) | 813 |
| PciI | ACATGT | 2 cut(s) | 419, 553 |
| PleI | GAGTC | 3 cut(s) | 45, 512, 841 |
| PluTI | GGCGCC | 2 cut(s) | 33, 574 |
| PpsI | GAGTC | 3 cut(s) | 45, 512, 841 |
| PpuMI | RGGWCCY | 1 cut(s) | 709 |
| PscI | ACATGT | 2 cut(s) | 419, 553 |
| Psp124BI | GAGCTC | 1 cut(s) | 265 |
| Psp5II | RGGWCCY | 1 cut(s) | 709 |
| Psp6I | CCWGG | 1 cut(s) | 226 |
| PspFI | CCCAGC | 1 cut(s) | 536 |
| PspGI | CCWGG | 1 cut(s) | 226 |
| PspN4I | GGNNCC | 7 cut(s) | 31, 572, 665, 710, 711, 788, 821 |
| PspPI | GGNCC | 2 cut(s) | 709, 820 |
| PspPPI | RGGWCCY | 1 cut(s) | 709 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| PsuI | RGATCY | 1 cut(s) | 401 |
| PteI | GCGCGC | 1 cut(s) | 813 |
| RsaI | GTAC | 2 cut(s) | 66, 773 |
| RsaNI | GTAC | 2 cut(s) | 65, 772 |
| RseI | CAYNNNNRTG | 1 cut(s) | 492 |
| SacI | GAGCTC | 1 cut(s) | 265 |
| SacII | CCGCGG | 1 cut(s) | 374 |
| SaqAI | TTAA | 1 cut(s) | 382 |
| Sau3AI | GATC | 5 cut(s) | 44, 401, 442, 824, 841 |
| Sau96I | GGNCC | 2 cut(s) | 709, 820 |
| SchI | GAGTC | 3 cut(s) | 45, 513, 842 |
| ScrFI | CCNGG | 4 cut(s) | 228, 248, 776, 777 |
| SduI | GDGCHC | 3 cut(s) | 265, 624, 668 |
| SfaNI | GCATC | 2 cut(s) | 356, 860 |
| SfcI | CTRYAG | 1 cut(s) | 453 |
| SfoI | GGCGCC | 2 cut(s) | 31, 572 |
| Sfr303I | CCGCGG | 1 cut(s) | 374 |
| SgrBI | CCGCGG | 1 cut(s) | 374 |
| SinI | GGWCC | 2 cut(s) | 709, 820 |
| SmaI | CCCGGG | 1 cut(s) | 777 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 492 |
| Sse9I | AATT | 1 cut(s) | 163 |
| SspDI | GGCGCC | 2 cut(s) | 29, 570 |
| SstI | GAGCTC | 1 cut(s) | 265 |
| StyD4I | CCNGG | 4 cut(s) | 226, 246, 774, 775 |
| StyI | CCWWGG | 1 cut(s) | 307 |
| TaiI | ACGT | 2 cut(s) | 550, 745 |
| TaqI | TCGA | 4 cut(s) | 3, 328, 577, 840 |
| TasI | AATT | 1 cut(s) | 163 |
| TauI | GCSGC | 9 cut(s) | 234, 376, 390, 471, 536, 642, 691, 851, 854 |
| Tru1I | TTAA | 1 cut(s) | 382 |
| Tru9I | TTAA | 1 cut(s) | 382 |
| TscAI | CASTG | 3 cut(s) | 19, 47, 863 |
| TseFI | GTSAC | 1 cut(s) | 834 |
| TseI | GCWGC | 6 cut(s) | 242, 449, 452, 497, 676, 767 |
| Tsp45I | GTSAC | 1 cut(s) | 834 |
| TspDTI | ATGAA | 3 cut(s) | 65, 430, 543 |
| TspMI | CCCGGG | 1 cut(s) | 775 |
| TspRI | CASTG | 3 cut(s) | 19, 47, 863 |
| VpaK11BI | GGWCC | 2 cut(s) | 709, 820 |
| XceI | RCATGY | 2 cut(s) | 423, 557 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 314 |
| XmaI | CCCGGG | 1 cut(s) | 775 |
| XmiI | GTMKAC | 2 cut(s) | 507, 550 |