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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 164, 352, 869, 1634 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 417, 913 |
| AccBSI | CCGCTC | 6 cut(s) | 1023, 1099, 1237, 1378, 1390, 1719 |
| AccI | GTMKAC | 1 cut(s) | 1136 |
| AccII | CGCG | 5 cut(s) | 245, 308, 330, 567, 674 |
| AclI | AACGTT | 1 cut(s) | 1365 |
| AclWI | GGATC | 1 cut(s) | 1465 |
| AcoI | YGGCCR | 2 cut(s) | 1446, 1563 |
| AcuI | CTGAAG | 4 cut(s) | 239, 957, 1144, 1935 |
| AcyI | GRCGYC | 3 cut(s) | 615, 1347, 1769 |
| AfaI | GTAC | 7 cut(s) | 10, 314, 512, 671, 1018, 1601, 1678 |
| AflIII | ACRYGT | 3 cut(s) | 414, 672, 1422 |
| AgsI | TTSAA | 2 cut(s) | 285, 1709 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1845 |
| AjnI | CCWGG | 7 cut(s) | 369, 522, 657, 912, 1206, 1227, 1696 |
| AleI | CACNNNNGTG | 2 cut(s) | 777, 1818 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1062, 1094 |
| AluBI | AGCT | 9 cut(s) | 253, 320, 830, 977, 1243, 1360, 1411, 1544, 1643 |
| AluI | AGCT | 9 cut(s) | 253, 320, 830, 977, 1243, 1360, 1411, 1544, 1643 |
| Alw21I | GWGCWC | 1 cut(s) | 965 |
| Alw26I | GTCTC | 2 cut(s) | 1794, 1832 |
| AlwI | GGATC | 1 cut(s) | 1465 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 370, 1228 |
| Ama87I | CYCGRG | 3 cut(s) | 983, 1720, 1857 |
| AoxI | GGCC | 9 cut(s) | 298, 942, 1284, 1446, 1552, 1563, 1629, 1809, 1896 |
| AspLEI | GCGC | 8 cut(s) | 75, 245, 436, 522, 724, 835, 853, 889 |
| AsuC2I | CCSGG | 5 cut(s) | 240, 594, 710, 743, 1442 |
| AsuHPI | GGTGA | 7 cut(s) | 259, 715, 794, 896, 1079, 1079, 1535 |
| AsuNHI | GCTAGC | 1 cut(s) | 107 |
| AvaI | CYCGRG | 3 cut(s) | 983, 1720, 1857 |
| AvaII | GGWCC | 7 cut(s) | 470, 634, 739, 810, 989, 1261, 1438 |
| BaeGI | GKGCMC | 4 cut(s) | 357, 410, 1179, 1639 |
| BanI | GGYRCC | 4 cut(s) | 164, 352, 869, 1634 |
| BanII | GRGCYC | 2 cut(s) | 731, 1717 |
| BauI | CACGAG | 1 cut(s) | 549 |
| BbsI | GAAGAC | 2 cut(s) | 701, 1350 |
| Bbv12I | GWGCWC | 1 cut(s) | 965 |
| BbvCI | CCTCAGC | 1 cut(s) | 1545 |
| BccI | CCATC | 1 cut(s) | 1657 |
| BceAI | ACGGC | 7 cut(s) | 178, 191, 594, 1127, 1169, 1539, 1863 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 73, 107, 1319, 1353 |
| BciT130I | CCWGG | 7 cut(s) | 371, 524, 659, 914, 1208, 1229, 1698 |
| BciVI | GTATCC | 1 cut(s) | 127 |
| BcnI | CCSGG | 5 cut(s) | 240, 594, 710, 743, 1442 |
| BcoDI | GTCTC | 2 cut(s) | 1794, 1832 |
| BfaI | CTAG | 5 cut(s) | 30, 77, 108, 1517, 1640 |
| BfmI | CTRYAG | 2 cut(s) | 362, 952 |
| BfoI | RGCGCY | 5 cut(s) | 76, 437, 523, 725, 854 |
| BfuI | GTATCC | 1 cut(s) | 127 |
| BlpI | GCTNAGC | 1 cut(s) | 725 |
| Bme18I | GGWCC | 7 cut(s) | 470, 634, 739, 810, 989, 1261, 1438 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1845 |
| BmeT110I | CYCGRG | 3 cut(s) | 983, 1720, 1857 |
| BmrI | ACTGGG | 1 cut(s) | 1839 |
| BmsI | GCATC | 3 cut(s) | 396, 1327, 1900 |
| BmtI | GCTAGC | 1 cut(s) | 111 |
| BmuI | ACTGGG | 1 cut(s) | 1839 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1142 |
| BpiI | GAAGAC | 2 cut(s) | 701, 1350 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1742, 1774 |
| BpmI | CTGGAG | 3 cut(s) | 204, 1250, 1433 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1244, 1545 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 725 |
| BpuEI | CTTGAG | 1 cut(s) | 1339 |
| BpuMI | CCSGG | 5 cut(s) | 240, 594, 710, 743, 1442 |
| BsaAI | YACGTR | 1 cut(s) | 514 |
| BsaHI | GRCGYC | 3 cut(s) | 615, 1347, 1769 |
| BsaI | GGTCTC | 1 cut(s) | 1832 |
| BsaWI | WCCGGW | 1 cut(s) | 231 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1067, 1097 |
| Bse118I | RCCGGY | 4 cut(s) | 213, 812, 853, 1631 |
| Bse1I | ACTGG | 4 cut(s) | 293, 510, 1845, 1902 |
| BseBI | CCWGG | 7 cut(s) | 371, 524, 659, 914, 1208, 1229, 1698 |
| BseGI | GGATG | 2 cut(s) | 198, 1885 |
| BseMII | CTCAG | 8 cut(s) | 704, 716, 726, 1258, 1494, 1536, 1775, 1790 |
| BseNI | ACTGG | 4 cut(s) | 293, 510, 1845, 1902 |
| BseRI | GAGGAG | 2 cut(s) | 287, 947 |
| BseSI | GKGCMC | 4 cut(s) | 357, 410, 1179, 1639 |
| BseX3I | CGGCCG | 1 cut(s) | 1563 |
| BseYI | CCCAGC | 2 cut(s) | 1102, 1796 |
| Bsh1236I | CGCG | 5 cut(s) | 245, 308, 330, 567, 674 |
| Bsh1285I | CGRYCG | 4 cut(s) | 477, 1136, 1140, 1566 |
| BshFI | GGCC | 9 cut(s) | 300, 944, 1286, 1448, 1554, 1565, 1631, 1811, 1898 |
| BshNI | GGYRCC | 4 cut(s) | 164, 352, 869, 1634 |
| BsiEI | CGRYCG | 4 cut(s) | 477, 1136, 1140, 1566 |
| BsiHKAI | GWGCWC | 1 cut(s) | 965 |
| BsiHKCI | CYCGRG | 3 cut(s) | 983, 1720, 1857 |
| BslFI | GGGAC | 7 cut(s) | 725, 823, 975, 1286, 1411, 1451, 1833 |
| BsmAI | GTCTC | 2 cut(s) | 1794, 1832 |
| BsmFI | GGGAC | 7 cut(s) | 725, 823, 975, 1286, 1411, 1451, 1833 |
| BsnI | GGCC | 9 cut(s) | 300, 944, 1286, 1448, 1554, 1565, 1631, 1811, 1898 |
| Bso31I | GGTCTC | 1 cut(s) | 1832 |
| BsoBI | CYCGRG | 3 cut(s) | 983, 1720, 1857 |
| Bsp1286I | GDGCHC | 7 cut(s) | 357, 410, 731, 965, 1179, 1639, 1717 |
| Bsp143I | GATC | 2 cut(s) | 1470, 1506 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 725 |
| Bsp19I | CCATGG | 1 cut(s) | 630 |
| Bsp68I | TCGCGA | 1 cut(s) | 330 |
| BspANI | GGCC | 9 cut(s) | 300, 944, 1286, 1448, 1554, 1565, 1631, 1811, 1898 |
| BspCNI | CTCAG | 8 cut(s) | 703, 717, 727, 1257, 1495, 1537, 1774, 1789 |
| BspFNI | CGCG | 5 cut(s) | 245, 308, 330, 567, 674 |
| BspMAI | CTGCAG | 1 cut(s) | 956 |
| BspOI | GCTAGC | 1 cut(s) | 111 |
| BspPI | GGATC | 1 cut(s) | 1465 |
| BspQI | GCTCTTC | 1 cut(s) | 63 |
| BspT107I | GGYRCC | 4 cut(s) | 164, 352, 869, 1634 |
| BspTNI | GGTCTC | 1 cut(s) | 1832 |
| BsrBI | CCGCTC | 6 cut(s) | 1023, 1099, 1237, 1378, 1390, 1719 |
| BsrFI | RCCGGY | 4 cut(s) | 213, 812, 853, 1631 |
| BsrI | ACTGG | 4 cut(s) | 293, 510, 1845, 1902 |
| BssAI | RCCGGY | 4 cut(s) | 213, 812, 853, 1631 |
| BssMI | GATC | 2 cut(s) | 1470, 1506 |
| BssNI | GRCGYC | 3 cut(s) | 615, 1347, 1769 |
| BssSI | CACGAG | 1 cut(s) | 549 |
| BssT1I | CCWWGG | 3 cut(s) | 630, 775, 1452 |
| Bst2BI | CACGAG | 1 cut(s) | 549 |
| Bst2UI | CCWGG | 7 cut(s) | 371, 524, 659, 914, 1208, 1229, 1698 |
| Bst4CI | ACNGT | 7 cut(s) | 268, 478, 561, 638, 1067, 1401, 1834 |
| Bst6I | CTCTTC | 1 cut(s) | 63 |
| BstACI | GRCGYC | 3 cut(s) | 615, 1347, 1769 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 960 |
| BstBAI | YACGTR | 1 cut(s) | 514 |
| BstDEI | CTNAG | 9 cut(s) | 690, 725, 735, 1244, 1503, 1545, 1653, 1761, 1776 |
| BstDSI | CCRYGG | 5 cut(s) | 306, 477, 630, 836, 1351 |
| BstF5I | GGATG | 2 cut(s) | 198, 1885 |
| BstFNI | CGCG | 5 cut(s) | 245, 308, 330, 567, 674 |
| BstH2I | RGCGCY | 5 cut(s) | 76, 437, 523, 725, 854 |
| BstHHI | GCGC | 8 cut(s) | 75, 245, 436, 522, 724, 835, 853, 889 |
| BstKTI | GATC | 2 cut(s) | 1473, 1509 |
| BstMAI | GTCTC | 2 cut(s) | 1794, 1832 |
| BstMBI | GATC | 2 cut(s) | 1470, 1506 |
| BstMCI | CGRYCG | 4 cut(s) | 477, 1136, 1140, 1566 |
| BstNI | CCWGG | 7 cut(s) | 371, 524, 659, 914, 1208, 1229, 1698 |
| BstNSI | RCATGY | 2 cut(s) | 418, 1426 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1142 |
| BstSFI | CTRYAG | 2 cut(s) | 362, 952 |
| BstSLI | GKGCMC | 4 cut(s) | 357, 410, 1179, 1639 |
| BstUI | CGCG | 5 cut(s) | 245, 308, 330, 567, 674 |
| BstV2I | GAAGAC | 2 cut(s) | 701, 1350 |
| BstX2I | RGATCY | 1 cut(s) | 1470 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 779 |
| BstYI | RGATCY | 1 cut(s) | 1470 |
| BstZI | CGGCCG | 1 cut(s) | 1563 |
| BsuI | GTATCC | 1 cut(s) | 127 |
| BsuRI | GGCC | 9 cut(s) | 300, 944, 1286, 1448, 1554, 1565, 1631, 1811, 1898 |
| BtgI | CCRYGG | 5 cut(s) | 306, 477, 630, 836, 1351 |
| BtgZI | GCGATG | 2 cut(s) | 373, 1350 |
| BtsCI | GGATG | 2 cut(s) | 198, 1885 |
| BtsI | GCAGTG | 1 cut(s) | 1686 |
| BtsIMutI | CAGTG | 4 cut(s) | 300, 566, 1610, 1686 |
| BtuMI | TCGCGA | 1 cut(s) | 330 |
| CaiI | CAGNNNCTG | 2 cut(s) | 370, 1228 |
| CciNI | GCGGCCGC | 1 cut(s) | 1563 |
| CfoI | GCGC | 8 cut(s) | 75, 245, 436, 522, 724, 835, 853, 889 |
| Cfr10I | RCCGGY | 4 cut(s) | 213, 812, 853, 1631 |
| Cfr42I | CCGCGG | 1 cut(s) | 309 |
| CseI | GACGC | 7 cut(s) | 245, 623, 663, 1203, 1323, 1355, 1777 |
| CsiI | ACCWGGT | 1 cut(s) | 369 |
| Csp6I | GTAC | 7 cut(s) | 9, 313, 511, 670, 1017, 1600, 1677 |
| CviAII | CATG | 6 cut(s) | 415, 631, 667, 1196, 1423, 1703 |
| CviQI | GTAC | 7 cut(s) | 9, 313, 511, 670, 1017, 1600, 1677 |
| DdeI | CTNAG | 9 cut(s) | 690, 725, 735, 1244, 1503, 1545, 1653, 1761, 1776 |
| DpnI | GATC | 2 cut(s) | 1472, 1508 |
| DpnII | GATC | 2 cut(s) | 1470, 1506 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1845 |
| EaeI | YGGCCR | 2 cut(s) | 1446, 1563 |
| EagI | CGGCCG | 1 cut(s) | 1563 |
| Eam1104I | CTCTTC | 1 cut(s) | 63 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1845 |
| EarI | CTCTTC | 1 cut(s) | 63 |
| EciI | GGCGGA | 5 cut(s) | 249, 497, 1610, 1755, 1878 |
| EclXI | CGGCCG | 1 cut(s) | 1563 |
| Eco130I | CCWWGG | 3 cut(s) | 630, 775, 1452 |
| Eco147I | AGGCCT | 1 cut(s) | 944 |
| Eco24I | GRGCYC | 2 cut(s) | 731, 1717 |
| Eco31I | GGTCTC | 1 cut(s) | 1832 |
| Eco47I | GGWCC | 7 cut(s) | 470, 634, 739, 810, 989, 1261, 1438 |
| Eco52I | CGGCCG | 1 cut(s) | 1563 |
| Eco57I | CTGAAG | 4 cut(s) | 239, 957, 1144, 1935 |
| Eco88I | CYCGRG | 3 cut(s) | 983, 1720, 1857 |
| EcoO109I | RGGNCCY | 2 cut(s) | 739, 989 |
| EcoRII | CCWGG | 7 cut(s) | 369, 522, 657, 912, 1206, 1227, 1696 |
| EcoT14I | CCWWGG | 3 cut(s) | 630, 775, 1452 |
| EcoT38I | GRGCYC | 2 cut(s) | 731, 1717 |
| ErhI | CCWWGG | 3 cut(s) | 630, 775, 1452 |
| FaeI | CATG | 6 cut(s) | 418, 634, 670, 1199, 1426, 1706 |
| FaqI | GGGAC | 7 cut(s) | 725, 823, 975, 1286, 1411, 1451, 1833 |
| FatI | CATG | 6 cut(s) | 414, 630, 666, 1195, 1422, 1702 |
| FblI | GTMKAC | 1 cut(s) | 1136 |
| FokI | GGATG | 2 cut(s) | 205, 1872 |
| FriOI | GRGCYC | 2 cut(s) | 731, 1717 |
| FspBI | CTAG | 5 cut(s) | 30, 77, 108, 1517, 1640 |
| GlaI | GCGC | 8 cut(s) | 74, 244, 435, 521, 723, 834, 852, 888 |
| GsaI | CCCAGC | 2 cut(s) | 1106, 1800 |
| GsuI | CTGGAG | 3 cut(s) | 204, 1250, 1433 |
| HaeII | RGCGCY | 5 cut(s) | 76, 437, 523, 725, 854 |
| HaeIII | GGCC | 9 cut(s) | 300, 944, 1286, 1448, 1554, 1565, 1631, 1811, 1898 |
| HgaI | GACGC | 7 cut(s) | 245, 623, 663, 1203, 1323, 1355, 1777 |
| HhaI | GCGC | 8 cut(s) | 75, 245, 436, 522, 724, 835, 853, 889 |
| Hin1I | GRCGYC | 3 cut(s) | 615, 1347, 1769 |
| Hin1II | CATG | 6 cut(s) | 418, 634, 670, 1199, 1426, 1706 |
| Hin6I | GCGC | 8 cut(s) | 73, 243, 434, 520, 722, 833, 851, 887 |
| HinP1I | GCGC | 8 cut(s) | 73, 243, 434, 520, 722, 833, 851, 887 |
| HincII | GTYRAC | 3 cut(s) | 175, 211, 1137 |
| HindII | GTYRAC | 3 cut(s) | 175, 211, 1137 |
| HinfI | GANTC | 8 cut(s) | 140, 547, 662, 697, 1031, 1151, 1577, 1757 |
| HphI | GGTGA | 7 cut(s) | 259, 715, 794, 896, 1079, 1079, 1535 |
| Hpy166II | GTNNAC | 9 cut(s) | 175, 211, 313, 511, 706, 1070, 1137, 1488, 1883 |
| Hpy188I | TCNGA | 4 cut(s) | 693, 736, 967, 1867 |
| Hpy188III | TCNNGA | 6 cut(s) | 20, 329, 551, 983, 1267, 1748 |
| Hpy8I | GTNNAC | 9 cut(s) | 175, 211, 313, 511, 706, 1070, 1137, 1488, 1883 |
| Hpy99I | CGWCG | 4 cut(s) | 268, 932, 1067, 1317 |
| HpyCH4III | ACNGT | 7 cut(s) | 268, 478, 561, 638, 1067, 1401, 1834 |
| HpyCH4IV | ACGT | 3 cut(s) | 513, 1179, 1365 |
| HpyCH4V | TGCA | 2 cut(s) | 64, 954 |
| HpyF3I | CTNAG | 9 cut(s) | 690, 725, 735, 1244, 1503, 1545, 1653, 1761, 1776 |
| HpySE526I | ACGT | 3 cut(s) | 513, 1179, 1365 |
| Hsp92I | GRCGYC | 3 cut(s) | 615, 1347, 1769 |
| Hsp92II | CATG | 6 cut(s) | 418, 634, 670, 1199, 1426, 1706 |
| HspAI | GCGC | 8 cut(s) | 73, 243, 434, 520, 722, 833, 851, 887 |
| KflI | GGGWCCC | 1 cut(s) | 989 |
| KroI | GCCGGC | 1 cut(s) | 853 |
| KroNI | GCCGGC | 1 cut(s) | 855 |
| KspI | CCGCGG | 1 cut(s) | 309 |
| Kzo9I | GATC | 2 cut(s) | 1470, 1506 |
| LguI | GCTCTTC | 1 cut(s) | 63 |
| LmnI | GCTCC | 6 cut(s) | 920, 985, 1387, 1414, 1712, 1925 |
| LweI | GCATC | 3 cut(s) | 396, 1327, 1900 |
| MabI | ACCWGGT | 1 cut(s) | 369 |
| MaeI | CTAG | 5 cut(s) | 30, 77, 108, 1517, 1640 |
| MaeII | ACGT | 3 cut(s) | 513, 1179, 1365 |
| MaeIII | GTNAC | 4 cut(s) | 337, 611, 782, 902 |
| MalI | GATC | 2 cut(s) | 1472, 1508 |
| MbiI | CCGCTC | 6 cut(s) | 1023, 1099, 1237, 1378, 1390, 1719 |
| MboI | GATC | 2 cut(s) | 1470, 1506 |
| MboII | GAAGA | 5 cut(s) | 80, 706, 887, 1355, 1471 |
| MfeI | CAATTG | 1 cut(s) | 1589 |
| MflI | RGATCY | 1 cut(s) | 1470 |
| MhlI | GDGCHC | 7 cut(s) | 357, 410, 731, 965, 1179, 1639, 1717 |
| MluCI | AATT | 1 cut(s) | 1589 |
| MluI | ACGCGT | 1 cut(s) | 672 |
| MlyI | GAGTC | 6 cut(s) | 149, 541, 691, 1025, 1586, 1751 |
| MmeI | TCCRAC | 1 cut(s) | 898 |
| MreI | CGCCGGCG | 1 cut(s) | 853 |
| MroNI | GCCGGC | 1 cut(s) | 853 |
| MslI | CAYNNNNRTG | 2 cut(s) | 777, 1818 |
| MunI | CAATTG | 1 cut(s) | 1589 |
| MvaI | CCWGG | 7 cut(s) | 371, 524, 659, 914, 1208, 1229, 1698 |
| MvnI | CGCG | 5 cut(s) | 245, 308, 330, 567, 674 |
| NaeI | GCCGGC | 1 cut(s) | 855 |
| NciI | CCSGG | 5 cut(s) | 240, 594, 710, 743, 1442 |
| NcoI | CCATGG | 1 cut(s) | 630 |
| NdeII | GATC | 2 cut(s) | 1470, 1506 |
| NgoMIV | GCCGGC | 1 cut(s) | 853 |
| NheI | GCTAGC | 1 cut(s) | 107 |
| NlaIII | CATG | 6 cut(s) | 418, 634, 670, 1199, 1426, 1706 |
| NmuCI | GTSAC | 4 cut(s) | 337, 611, 782, 902 |
| NotI | GCGGCCGC | 1 cut(s) | 1563 |
| NruI | TCGCGA | 1 cut(s) | 330 |
| NspI | RCATGY | 2 cut(s) | 418, 1426 |
| OliI | CACNNNNGTG | 2 cut(s) | 777, 1818 |
| PceI | AGGCCT | 1 cut(s) | 944 |
| PciI | ACATGT | 2 cut(s) | 414, 1422 |
| PciSI | GCTCTTC | 1 cut(s) | 63 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 13, 936 |
| PdiI | GCCGGC | 1 cut(s) | 855 |
| PfeI | GAWTC | 2 cut(s) | 662, 1151 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 417, 913 |
| PfoI | TCCNGGA | 1 cut(s) | 657 |
| PleI | GAGTC | 6 cut(s) | 148, 541, 691, 1025, 1585, 1751 |
| PpsI | GAGTC | 6 cut(s) | 148, 541, 691, 1025, 1585, 1751 |
| Ppu21I | YACGTR | 1 cut(s) | 514 |
| PpuMI | RGGWCCY | 2 cut(s) | 739, 989 |
| PscI | ACATGT | 2 cut(s) | 414, 1422 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1142 |
| Psp1406I | AACGTT | 1 cut(s) | 1365 |
| Psp5II | RGGWCCY | 2 cut(s) | 739, 989 |
| Psp6I | CCWGG | 7 cut(s) | 369, 522, 657, 912, 1206, 1227, 1696 |
| PspFI | CCCAGC | 2 cut(s) | 1102, 1796 |
| PspGI | CCWGG | 7 cut(s) | 369, 522, 657, 912, 1206, 1227, 1696 |
| PspPPI | RGGWCCY | 2 cut(s) | 739, 989 |
| PstI | CTGCAG | 1 cut(s) | 956 |
| PstNI | CAGNNNCTG | 2 cut(s) | 370, 1228 |
| PsuI | RGATCY | 1 cut(s) | 1470 |
| PvuII | CAGCTG | 1 cut(s) | 977 |
| RruI | TCGCGA | 1 cut(s) | 330 |
| RsaI | GTAC | 7 cut(s) | 10, 314, 512, 671, 1018, 1601, 1678 |
| RsaNI | GTAC | 7 cut(s) | 9, 313, 511, 670, 1017, 1600, 1677 |
| RseI | CAYNNNNRTG | 2 cut(s) | 777, 1818 |
| SacII | CCGCGG | 1 cut(s) | 309 |
| SalI | GTCGAC | 1 cut(s) | 1135 |
| SapI | GCTCTTC | 1 cut(s) | 63 |
| Sau3AI | GATC | 2 cut(s) | 1470, 1506 |
| SchI | GAGTC | 6 cut(s) | 149, 541, 691, 1025, 1586, 1751 |
| SduI | GDGCHC | 7 cut(s) | 357, 410, 731, 965, 1179, 1639, 1717 |
| SexAI | ACCWGGT | 1 cut(s) | 369 |
| SfaNI | GCATC | 3 cut(s) | 396, 1327, 1900 |
| SfcI | CTRYAG | 2 cut(s) | 362, 952 |
| Sfr303I | CCGCGG | 1 cut(s) | 309 |
| SgrAI | CRCCGGYG | 1 cut(s) | 853 |
| SgrBI | CCGCGG | 1 cut(s) | 309 |
| SinI | GGWCC | 7 cut(s) | 470, 634, 739, 810, 989, 1261, 1438 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 777, 1818 |
| SmlI | CTYRAG | 1 cut(s) | 1318 |
| SmoI | CTYRAG | 1 cut(s) | 1318 |
| Sse9I | AATT | 1 cut(s) | 1589 |
| SseBI | AGGCCT | 1 cut(s) | 944 |
| SspMI | CTAG | 5 cut(s) | 30, 77, 108, 1517, 1640 |
| StuI | AGGCCT | 1 cut(s) | 944 |
| StyI | CCWWGG | 3 cut(s) | 630, 775, 1452 |
| TaaI | ACNGT | 7 cut(s) | 268, 478, 561, 638, 1067, 1401, 1834 |
| TaiI | ACGT | 3 cut(s) | 516, 1182, 1368 |
| TaqI | TCGA | 4 cut(s) | 156, 1136, 1308, 1782 |
| TaqII | GACCGA | 4 cut(s) | 212, 487, 1122, 1631 |
| TasI | AATT | 1 cut(s) | 1589 |
| TatI | WGTACW | 1 cut(s) | 1599 |
| TfiI | GAWTC | 2 cut(s) | 662, 1151 |
| TscAI | CASTG | 4 cut(s) | 300, 566, 1617, 1693 |
| TseFI | GTSAC | 4 cut(s) | 337, 611, 782, 902 |
| Tsp45I | GTSAC | 4 cut(s) | 337, 611, 782, 902 |
| TspGWI | ACGGA | 2 cut(s) | 853, 909 |
| TspRI | CASTG | 4 cut(s) | 300, 566, 1617, 1693 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 417, 913 |
| VpaK11BI | GGWCC | 7 cut(s) | 470, 634, 739, 810, 989, 1261, 1438 |
| XceI | RCATGY | 2 cut(s) | 418, 1426 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 773, 914 |
| XmiI | GTMKAC | 1 cut(s) | 1136 |
| XspI | CTAG | 5 cut(s) | 30, 77, 108, 1517, 1640 |