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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 450 |
| AccB1I | GGYRCC | 1 cut(s) | 875 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 597 |
| AccBSI | CCGCTC | 3 cut(s) | 87, 1792, 2026 |
| AccII | CGCG | 5 cut(s) | 500, 625, 853, 1212, 1567 |
| AccIII | TCCGGA | 2 cut(s) | 172, 628 |
| AclWI | GGATC | 5 cut(s) | 76, 89, 487, 803, 884 |
| AcoI | YGGCCR | 6 cut(s) | 441, 783, 1998, 2082, 2136, 2199 |
| AcsI | RAATTY | 1 cut(s) | 511 |
| AcuI | CTGAAG | 5 cut(s) | 504, 870, 1559, 1837, 2096 |
| AcvI | CACGTG | 1 cut(s) | 1307 |
| AcyI | GRCGYC | 5 cut(s) | 156, 447, 1503, 1907, 1983 |
| AfaI | GTAC | 9 cut(s) | 265, 700, 948, 971, 1064, 1106, 1184, 1711, 2219 |
| AflIII | ACRYGT | 4 cut(s) | 197, 358, 1304, 2058 |
| AgsI | TTSAA | 4 cut(s) | 207, 496, 1542, 2105 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1057 |
| AjiI | CACGTC | 1 cut(s) | 1873 |
| AjnI | CCWGG | 4 cut(s) | 981, 1324, 1389, 2019 |
| AleI | CACNNNNGTG | 1 cut(s) | 1568 |
| AluBI | AGCT | 8 cut(s) | 210, 776, 1033, 1292, 1930, 1936, 1996, 2190 |
| AluI | AGCT | 8 cut(s) | 210, 776, 1033, 1292, 1930, 1936, 1996, 2190 |
| Alw21I | GWGCWC | 3 cut(s) | 307, 1375, 1938 |
| Alw26I | GTCTC | 4 cut(s) | 89, 115, 315, 1310 |
| AlwI | GGATC | 5 cut(s) | 76, 89, 487, 803, 884 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 482, 893 |
| Ama87I | CYCGRG | 1 cut(s) | 1676 |
| Aor13HI | TCCGGA | 2 cut(s) | 172, 628 |
| ApaI | GGGCCC | 1 cut(s) | 1642 |
| ApeKI | GCWGC | 8 cut(s) | 41, 653, 776, 1423, 1885, 2068, 2190, 2195 |
| ApoI | RAATTY | 1 cut(s) | 511 |
| AseI | ATTAAT | 1 cut(s) | 122 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2109 |
| AspLEI | GCGC | 4 cut(s) | 559, 981, 1491, 2195 |
| AspS9I | GGNCC | 8 cut(s) | 821, 929, 1116, 1366, 1638, 1639, 1670, 2017 |
| AsuC2I | CCSGG | 1 cut(s) | 1273 |
| AsuHPI | GGTGA | 6 cut(s) | 782, 1466, 1498, 1772, 1772, 2171 |
| AvaI | CYCGRG | 1 cut(s) | 1676 |
| AvaII | GGWCC | 5 cut(s) | 929, 1116, 1366, 1670, 2017 |
| AxyI | CCTNAGG | 1 cut(s) | 1046 |
| BaeGI | GKGCMC | 4 cut(s) | 880, 1029, 1642, 1872 |
| BalI | TGGCCA | 1 cut(s) | 2000 |
| BamHI | GGATCC | 1 cut(s) | 81 |
| BanI | GGYRCC | 1 cut(s) | 875 |
| BanII | GRGCYC | 4 cut(s) | 1134, 1527, 1642, 1938 |
| BauI | CACGAG | 2 cut(s) | 837, 1194 |
| BbrPI | CACGTG | 1 cut(s) | 1307 |
| BbsI | GAAGAC | 1 cut(s) | 302 |
| Bbv12I | GWGCWC | 3 cut(s) | 307, 1375, 1938 |
| BbvCI | CCTCAGC | 2 cut(s) | 553, 2181 |
| BbvI | GCAGC | 8 cut(s) | 28, 640, 763, 1410, 1872, 2055, 2177, 2182 |
| BccI | CCATC | 5 cut(s) | 131, 335, 433, 1172, 1406 |
| BceAI | ACGGC | 7 cut(s) | 92, 714, 1107, 1326, 1535, 1862, 2192 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1667, 1701, 1955, 1989 |
| BciT130I | CCWGG | 4 cut(s) | 983, 1326, 1391, 2021 |
| BcnI | CCSGG | 1 cut(s) | 1273 |
| BcoDI | GTCTC | 4 cut(s) | 89, 115, 315, 1310 |
| BfaI | CTAG | 5 cut(s) | 74, 569, 639, 686, 1493 |
| BfmI | CTRYAG | 2 cut(s) | 184, 584 |
| BfoI | RGCGCY | 2 cut(s) | 560, 982 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2135 |
| Bme1390I | CCNGG | 5 cut(s) | 983, 1273, 1326, 1391, 2021 |
| Bme18I | GGWCC | 5 cut(s) | 929, 1116, 1366, 1670, 2017 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1057 |
| BmeT110I | CYCGRG | 1 cut(s) | 1676 |
| BmgBI | CACGTC | 1 cut(s) | 1873 |
| BmgT120I | GGNCC | 8 cut(s) | 821, 929, 1116, 1366, 1638, 1639, 1670, 2017 |
| BmrFI | CCNGG | 5 cut(s) | 983, 1273, 1326, 1391, 2021 |
| BmsI | GCATC | 4 cut(s) | 629, 788, 1230, 1963 |
| BoxI | GACNNNNGTC | 1 cut(s) | 107 |
| BpiI | GAAGAC | 1 cut(s) | 302 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 789, 821 |
| BpmI | CTGGAG | 6 cut(s) | 1412, 1585, 1832, 1952, 2042, 2174 |
| Bpu10I | CCTNAGC | 4 cut(s) | 553, 1937, 2088, 2181 |
| BpuMI | CCSGG | 1 cut(s) | 1273 |
| BsaAI | YACGTR | 4 cut(s) | 29, 267, 973, 1307 |
| BsaHI | GRCGYC | 5 cut(s) | 156, 447, 1503, 1907, 1983 |
| BsaWI | WCCGGW | 3 cut(s) | 172, 628, 754 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1121, 1151 |
| Bse118I | RCCGGY | 2 cut(s) | 16, 736 |
| Bse1I | ACTGG | 4 cut(s) | 816, 969, 1070, 2139 |
| Bse21I | CCTNAGG | 1 cut(s) | 1046 |
| Bse3DI | GCAATG | 3 cut(s) | 139, 1368, 2001 |
| BseAI | TCCGGA | 2 cut(s) | 172, 628 |
| BseBI | CCWGG | 4 cut(s) | 983, 1326, 1391, 2021 |
| BseGI | GGATG | 4 cut(s) | 376, 444, 1164, 1398 |
| BseMI | GCAATG | 3 cut(s) | 139, 1368, 2001 |
| BseMII | CTCAG | 7 cut(s) | 212, 567, 1021, 1037, 1951, 2165, 2172 |
| BseNI | ACTGG | 4 cut(s) | 816, 969, 1070, 2139 |
| BseRI | GAGGAG | 3 cut(s) | 103, 1628, 1958 |
| BseSI | GKGCMC | 4 cut(s) | 880, 1029, 1642, 1872 |
| BseX3I | CGGCCG | 2 cut(s) | 783, 2199 |
| BseXI | GCAGC | 8 cut(s) | 28, 640, 763, 1410, 1872, 2055, 2177, 2182 |
| BseYI | CCCAGC | 2 cut(s) | 644, 1666 |
| Bsh1236I | CGCG | 5 cut(s) | 500, 625, 853, 1212, 1567 |
| Bsh1285I | CGRYCG | 3 cut(s) | 786, 936, 2202 |
| BshNI | GGYRCC | 1 cut(s) | 875 |
| BsiEI | CGRYCG | 3 cut(s) | 786, 936, 2202 |
| BsiHKAI | GWGCWC | 3 cut(s) | 307, 1375, 1938 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1676 |
| BsiSI | CCGG | 7 cut(s) | 17, 173, 287, 629, 737, 755, 1272 |
| BsiWI | CGTACG | 1 cut(s) | 263 |
| BslFI | GGGAC | 5 cut(s) | 208, 614, 1064, 2030, 2047 |
| BsmAI | GTCTC | 4 cut(s) | 89, 115, 315, 1310 |
| BsmBI | CGTCTC | 1 cut(s) | 115 |
| BsmFI | GGGAC | 5 cut(s) | 208, 614, 1064, 2030, 2047 |
| BsmI | GAATGC | 1 cut(s) | 342 |
| BsoBI | CYCGRG | 1 cut(s) | 1676 |
| Bsp120I | GGGCCC | 1 cut(s) | 1638 |
| Bsp1286I | GDGCHC | 9 cut(s) | 307, 880, 1029, 1134, 1375, 1527, 1642, 1872, 1938 |
| Bsp13I | TCCGGA | 2 cut(s) | 172, 628 |
| Bsp143I | GATC | 7 cut(s) | 81, 224, 479, 808, 889, 1035, 1717 |
| Bsp19I | CCATGG | 2 cut(s) | 379, 1623 |
| BspCNI | CTCAG | 7 cut(s) | 213, 566, 1020, 1038, 1950, 2166, 2173 |
| BspEI | TCCGGA | 2 cut(s) | 172, 628 |
| BspFNI | CGCG | 5 cut(s) | 500, 625, 853, 1212, 1567 |
| BspPI | GGATC | 5 cut(s) | 76, 89, 487, 803, 884 |
| BspT107I | GGYRCC | 1 cut(s) | 875 |
| BsrBI | CCGCTC | 3 cut(s) | 87, 1792, 2026 |
| BsrDI | GCAATG | 3 cut(s) | 139, 1368, 2001 |
| BsrFI | RCCGGY | 2 cut(s) | 16, 736 |
| BsrI | ACTGG | 4 cut(s) | 816, 969, 1070, 2139 |
| BssAI | RCCGGY | 2 cut(s) | 16, 736 |
| BssMI | GATC | 7 cut(s) | 81, 224, 479, 808, 889, 1035, 1717 |
| BssNI | GRCGYC | 5 cut(s) | 156, 447, 1503, 1907, 1983 |
| BssSI | CACGAG | 2 cut(s) | 837, 1194 |
| BssT1I | CCWWGG | 3 cut(s) | 379, 1018, 1623 |
| Bst2BI | CACGAG | 2 cut(s) | 837, 1194 |
| Bst2UI | CCWGG | 4 cut(s) | 983, 1326, 1391, 2021 |
| Bst6I | CTCTTC | 3 cut(s) | 790, 1197, 1605 |
| BstACI | GRCGYC | 5 cut(s) | 156, 447, 1503, 1907, 1983 |
| BstBAI | YACGTR | 4 cut(s) | 29, 267, 973, 1307 |
| BstDEI | CTNAG | 9 cut(s) | 221, 553, 1007, 1046, 1448, 1937, 2088, 2174, 2181 |
| BstDSI | CCRYGG | 7 cut(s) | 379, 596, 936, 1089, 1623, 1987, 2208 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1496, 1855 |
| BstF5I | GGATG | 4 cut(s) | 376, 444, 1164, 1398 |
| BstFNI | CGCG | 5 cut(s) | 500, 625, 853, 1212, 1567 |
| BstH2I | RGCGCY | 2 cut(s) | 560, 982 |
| BstHHI | GCGC | 4 cut(s) | 559, 981, 1491, 2195 |
| BstKTI | GATC | 7 cut(s) | 84, 227, 482, 811, 892, 1038, 1720 |
| BstMAI | GTCTC | 4 cut(s) | 89, 115, 315, 1310 |
| BstMBI | GATC | 7 cut(s) | 81, 224, 479, 808, 889, 1035, 1717 |
| BstMCI | CGRYCG | 3 cut(s) | 786, 936, 2202 |
| BstNI | CCWGG | 4 cut(s) | 983, 1326, 1391, 2021 |
| BstNSI | RCATGY | 3 cut(s) | 362, 1252, 2062 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 107 |
| BstSCI | CCNGG | 5 cut(s) | 981, 1271, 1324, 1389, 2019 |
| BstSFI | CTRYAG | 2 cut(s) | 184, 584 |
| BstSLI | GKGCMC | 4 cut(s) | 880, 1029, 1642, 1872 |
| BstUI | CGCG | 5 cut(s) | 500, 625, 853, 1212, 1567 |
| BstV1I | GCAGC | 8 cut(s) | 28, 640, 763, 1410, 1872, 2055, 2177, 2182 |
| BstV2I | GAAGAC | 1 cut(s) | 302 |
| BstX2I | RGATCY | 3 cut(s) | 81, 479, 889 |
| BstYI | RGATCY | 3 cut(s) | 81, 479, 889 |
| BstZI | CGGCCG | 2 cut(s) | 783, 2199 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1046 |
| BtgI | CCRYGG | 7 cut(s) | 379, 596, 936, 1089, 1623, 1987, 2208 |
| BtgZI | GCGATG | 2 cut(s) | 606, 1986 |
| BtrI | CACGTC | 1 cut(s) | 1873 |
| BtsCI | GGATG | 4 cut(s) | 376, 444, 1164, 1398 |
| BtsI | GCAGTG | 4 cut(s) | 27, 309, 472, 1491 |
| BtsIMutI | CAGTG | 6 cut(s) | 27, 309, 472, 721, 823, 1491 |
| CaiI | CAGNNNCTG | 2 cut(s) | 482, 893 |
| CciNI | GCGGCCGC | 1 cut(s) | 2199 |
| CfoI | GCGC | 4 cut(s) | 559, 981, 1491, 2195 |
| Cfr10I | RCCGGY | 2 cut(s) | 16, 736 |
| Cfr13I | GGNCC | 8 cut(s) | 821, 929, 1116, 1366, 1638, 1639, 1670, 2017 |
| CseI | GACGC | 8 cut(s) | 145, 518, 614, 1355, 1492, 1896, 1959, 1991 |
| Csp6I | GTAC | 9 cut(s) | 264, 699, 947, 970, 1063, 1105, 1183, 1710, 2218 |
| CviAII | CATG | 8 cut(s) | 359, 380, 610, 833, 1249, 1624, 1889, 2059 |
| CviQI | GTAC | 9 cut(s) | 264, 699, 947, 970, 1063, 1105, 1183, 1710, 2218 |
| DdeI | CTNAG | 9 cut(s) | 221, 553, 1007, 1046, 1448, 1937, 2088, 2174, 2181 |
| DpnI | GATC | 7 cut(s) | 83, 226, 481, 810, 891, 1037, 1719 |
| DpnII | GATC | 7 cut(s) | 81, 224, 479, 808, 889, 1035, 1717 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1057 |
| EaeI | YGGCCR | 6 cut(s) | 441, 783, 1998, 2082, 2136, 2199 |
| EagI | CGGCCG | 2 cut(s) | 783, 2199 |
| Eam1104I | CTCTTC | 3 cut(s) | 790, 1197, 1605 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1057 |
| EarI | CTCTTC | 3 cut(s) | 790, 1197, 1605 |
| EciI | GGCGGA | 4 cut(s) | 518, 956, 1252, 1662 |
| Ecl136II | GAGCTC | 1 cut(s) | 1936 |
| EclXI | CGGCCG | 2 cut(s) | 783, 2199 |
| Eco130I | CCWWGG | 3 cut(s) | 379, 1018, 1623 |
| Eco147I | AGGCCT | 1 cut(s) | 804 |
| Eco24I | GRGCYC | 4 cut(s) | 1134, 1527, 1642, 1938 |
| Eco47I | GGWCC | 5 cut(s) | 929, 1116, 1366, 1670, 2017 |
| Eco52I | CGGCCG | 2 cut(s) | 783, 2199 |
| Eco53kI | GAGCTC | 1 cut(s) | 1936 |
| Eco57I | CTGAAG | 5 cut(s) | 504, 870, 1559, 1837, 2096 |
| Eco72I | CACGTG | 1 cut(s) | 1307 |
| Eco81I | CCTNAGG | 1 cut(s) | 1046 |
| Eco88I | CYCGRG | 1 cut(s) | 1676 |
| EcoICRI | GAGCTC | 1 cut(s) | 1936 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1496, 1855 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1638, 2017 |
| EcoRII | CCWGG | 4 cut(s) | 981, 1324, 1389, 2019 |
| EcoT14I | CCWWGG | 3 cut(s) | 379, 1018, 1623 |
| EcoT38I | GRGCYC | 4 cut(s) | 1134, 1527, 1642, 1938 |
| ErhI | CCWWGG | 3 cut(s) | 379, 1018, 1623 |
| Esp3I | CGTCTC | 1 cut(s) | 115 |
| FaeI | CATG | 8 cut(s) | 362, 383, 613, 836, 1252, 1627, 1892, 2062 |
| FaqI | GGGAC | 5 cut(s) | 208, 614, 1064, 2030, 2047 |
| FatI | CATG | 8 cut(s) | 358, 379, 609, 832, 1248, 1623, 1888, 2058 |
| FauNDI | CATATG | 1 cut(s) | 91 |
| FokI | GGATG | 4 cut(s) | 383, 451, 1151, 1385 |
| FriOI | GRGCYC | 4 cut(s) | 1134, 1527, 1642, 1938 |
| FspBI | CTAG | 5 cut(s) | 74, 569, 639, 686, 1493 |
| GlaI | GCGC | 4 cut(s) | 558, 980, 1490, 2194 |
| GsaI | CCCAGC | 2 cut(s) | 648, 1670 |
| GsuI | CTGGAG | 6 cut(s) | 1412, 1585, 1832, 1952, 2042, 2174 |
| HaeII | RGCGCY | 2 cut(s) | 560, 982 |
| HapII | CCGG | 7 cut(s) | 17, 173, 287, 629, 737, 755, 1272 |
| HgaI | GACGC | 8 cut(s) | 145, 518, 614, 1355, 1492, 1896, 1959, 1991 |
| HhaI | GCGC | 4 cut(s) | 559, 981, 1491, 2195 |
| Hin1I | GRCGYC | 5 cut(s) | 156, 447, 1503, 1907, 1983 |
| Hin1II | CATG | 8 cut(s) | 362, 383, 613, 836, 1252, 1627, 1892, 2062 |
| Hin6I | GCGC | 4 cut(s) | 557, 979, 1489, 2193 |
| HinP1I | GCGC | 4 cut(s) | 557, 979, 1489, 2193 |
| HincII | GTYRAC | 2 cut(s) | 734, 1840 |
| HindII | GTYRAC | 2 cut(s) | 734, 1840 |
| HindIII | AAGCTT | 1 cut(s) | 208 |
| HpaII | CCGG | 7 cut(s) | 17, 173, 287, 629, 737, 755, 1272 |
| HphI | GGTGA | 6 cut(s) | 782, 1466, 1498, 1772, 1772, 2171 |
| Hpy166II | GTNNAC | 5 cut(s) | 734, 970, 1003, 1763, 1840 |
| Hpy188III | TCNNGA | 7 cut(s) | 173, 477, 629, 1039, 1196, 1721, 1811 |
| Hpy8I | GTNNAC | 5 cut(s) | 734, 970, 1003, 1763, 1840 |
| Hpy99I | CGWCG | 8 cut(s) | 161, 282, 449, 791, 1017, 1556, 1877, 1953 |
| HpyCH4IV | ACGT | 8 cut(s) | 28, 199, 266, 447, 972, 1136, 1306, 1872 |
| HpyCH4V | TGCA | 7 cut(s) | 51, 545, 620, 673, 779, 836, 1888 |
| HpyF3I | CTNAG | 9 cut(s) | 221, 553, 1007, 1046, 1448, 1937, 2088, 2174, 2181 |
| HpySE526I | ACGT | 8 cut(s) | 28, 199, 266, 447, 972, 1136, 1306, 1872 |
| Hsp92I | GRCGYC | 5 cut(s) | 156, 447, 1503, 1907, 1983 |
| Hsp92II | CATG | 8 cut(s) | 362, 383, 613, 836, 1252, 1627, 1892, 2062 |
| HspAI | GCGC | 4 cut(s) | 557, 979, 1489, 2193 |
| Kpn2I | TCCGGA | 2 cut(s) | 172, 628 |
| KroI | GCCGGC | 1 cut(s) | 16 |
| KroNI | GCCGGC | 1 cut(s) | 18 |
| Kzo9I | GATC | 7 cut(s) | 81, 224, 479, 808, 889, 1035, 1717 |
| LmnI | GCTCC | 9 cut(s) | 295, 1129, 1522, 1687, 1933, 1945, 2023, 2050, 2187 |
| Lsp1109I | GCAGC | 8 cut(s) | 28, 640, 763, 1410, 1872, 2055, 2177, 2182 |
| LweI | GCATC | 4 cut(s) | 629, 788, 1230, 1963 |
| MaeI | CTAG | 5 cut(s) | 74, 569, 639, 686, 1493 |
| MaeII | ACGT | 8 cut(s) | 28, 199, 266, 447, 972, 1136, 1306, 1872 |
| MaeIII | GTNAC | 6 cut(s) | 146, 179, 1155, 1343, 1454, 1504 |
| MalI | GATC | 7 cut(s) | 83, 226, 481, 810, 891, 1037, 1719 |
| MbiI | CCGCTC | 3 cut(s) | 87, 1792, 2026 |
| MboI | GATC | 7 cut(s) | 81, 224, 479, 808, 889, 1035, 1717 |
| MfeI | CAATTG | 1 cut(s) | 1298 |
| MflI | RGATCY | 3 cut(s) | 81, 479, 889 |
| MhlI | GDGCHC | 9 cut(s) | 307, 880, 1029, 1134, 1375, 1527, 1642, 1872, 1938 |
| MlsI | TGGCCA | 1 cut(s) | 2000 |
| MluCI | AATT | 5 cut(s) | 53, 511, 1143, 1298, 1632 |
| MluNI | TGGCCA | 1 cut(s) | 2000 |
| MlyI | GAGTC | 8 cut(s) | 317, 515, 1046, 1312, 1592, 1718, 2129, 2222 |
| MmeI | TCCRAC | 4 cut(s) | 1131, 1143, 1500, 2028 |
| Mox20I | TGGCCA | 1 cut(s) | 2000 |
| MroI | TCCGGA | 2 cut(s) | 172, 628 |
| MroNI | GCCGGC | 1 cut(s) | 16 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2109 |
| MscI | TGGCCA | 1 cut(s) | 2000 |
| MseI | TTAA | 3 cut(s) | 122, 168, 1146 |
| MslI | CAYNNNNRTG | 3 cut(s) | 608, 1449, 1568 |
| Msp20I | TGGCCA | 1 cut(s) | 2000 |
| MspA1I | CMGCKG | 4 cut(s) | 872, 1605, 1835, 2116 |
| MspI | CCGG | 7 cut(s) | 17, 173, 287, 629, 737, 755, 1272 |
| MspR9I | CCNGG | 5 cut(s) | 983, 1273, 1326, 1391, 2021 |
| MunI | CAATTG | 1 cut(s) | 1298 |
| Mva1269I | GAATGC | 1 cut(s) | 342 |
| MvaI | CCWGG | 4 cut(s) | 983, 1326, 1391, 2021 |
| MvnI | CGCG | 5 cut(s) | 500, 625, 853, 1212, 1567 |
| NaeI | GCCGGC | 1 cut(s) | 18 |
| NciI | CCSGG | 1 cut(s) | 1273 |
| NcoI | CCATGG | 2 cut(s) | 379, 1623 |
| NdeI | CATATG | 1 cut(s) | 91 |
| NdeII | GATC | 7 cut(s) | 81, 224, 479, 808, 889, 1035, 1717 |
| NgoMIV | GCCGGC | 1 cut(s) | 16 |
| NlaIII | CATG | 8 cut(s) | 362, 383, 613, 836, 1252, 1627, 1892, 2062 |
| NmeAIII | GCCGAG | 5 cut(s) | 95, 279, 742, 1768, 2164 |
| NmuCI | GTSAC | 3 cut(s) | 1343, 1454, 1504 |
| NotI | GCGGCCGC | 1 cut(s) | 2199 |
| NspI | RCATGY | 3 cut(s) | 362, 1252, 2062 |
| OliI | CACNNNNGTG | 1 cut(s) | 1568 |
| PceI | AGGCCT | 1 cut(s) | 804 |
| PciI | ACATGT | 2 cut(s) | 358, 2058 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 530, 622 |
| PctI | GAATGC | 1 cut(s) | 342 |
| PdiI | GCCGGC | 1 cut(s) | 18 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2109 |
| PfeI | GAWTC | 3 cut(s) | 386, 473, 1240 |
| Pfl23II | CGTACG | 1 cut(s) | 263 |
| PflFI | GACNNNGTC | 1 cut(s) | 605 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 597 |
| PfoI | TCCNGGA | 1 cut(s) | 1389 |
| PleI | GAGTC | 8 cut(s) | 317, 515, 1046, 1312, 1592, 1718, 2128, 2221 |
| PmaCI | CACGTG | 1 cut(s) | 1307 |
| PmlI | CACGTG | 1 cut(s) | 1307 |
| PpsI | GAGTC | 8 cut(s) | 317, 515, 1046, 1312, 1592, 1718, 2128, 2221 |
| Ppu21I | YACGTR | 4 cut(s) | 29, 267, 973, 1307 |
| PpuMI | RGGWCCY | 1 cut(s) | 2017 |
| PscI | ACATGT | 2 cut(s) | 358, 2058 |
| PshAI | GACNNNNGTC | 1 cut(s) | 107 |
| PshBI | ATTAAT | 1 cut(s) | 122 |
| Psp124BI | GAGCTC | 1 cut(s) | 1938 |
| Psp5II | RGGWCCY | 1 cut(s) | 2017 |
| Psp6I | CCWGG | 4 cut(s) | 981, 1324, 1389, 2019 |
| PspCI | CACGTG | 1 cut(s) | 1307 |
| PspFI | CCCAGC | 2 cut(s) | 644, 1666 |
| PspGI | CCWGG | 4 cut(s) | 981, 1324, 1389, 2019 |
| PspLI | CGTACG | 1 cut(s) | 263 |
| PspOMI | GGGCCC | 1 cut(s) | 1638 |
| PspPI | GGNCC | 8 cut(s) | 821, 929, 1116, 1366, 1638, 1639, 1670, 2017 |
| PspPPI | RGGWCCY | 1 cut(s) | 2017 |
| PstNI | CAGNNNCTG | 2 cut(s) | 482, 893 |
| PsuI | RGATCY | 3 cut(s) | 81, 479, 889 |
| PsyI | GACNNNGTC | 1 cut(s) | 605 |
| RsaI | GTAC | 9 cut(s) | 265, 700, 948, 971, 1064, 1106, 1184, 1711, 2219 |
| RsaNI | GTAC | 9 cut(s) | 264, 699, 947, 970, 1063, 1105, 1183, 1710, 2218 |
| RseI | CAYNNNNRTG | 3 cut(s) | 608, 1449, 1568 |
| SacI | GAGCTC | 1 cut(s) | 1938 |
| SaqAI | TTAA | 3 cut(s) | 122, 168, 1146 |
| Sau3AI | GATC | 7 cut(s) | 81, 224, 479, 808, 889, 1035, 1717 |
| Sau96I | GGNCC | 8 cut(s) | 821, 929, 1116, 1366, 1638, 1639, 1670, 2017 |
| SchI | GAGTC | 8 cut(s) | 317, 515, 1046, 1312, 1592, 1718, 2129, 2222 |
| ScrFI | CCNGG | 5 cut(s) | 983, 1273, 1326, 1391, 2021 |
| SduI | GDGCHC | 9 cut(s) | 307, 880, 1029, 1134, 1375, 1527, 1642, 1872, 1938 |
| SfaNI | GCATC | 4 cut(s) | 629, 788, 1230, 1963 |
| SfcI | CTRYAG | 2 cut(s) | 184, 584 |
| SinI | GGWCC | 5 cut(s) | 929, 1116, 1366, 1670, 2017 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 608, 1449, 1568 |
| Sse9I | AATT | 5 cut(s) | 53, 511, 1143, 1298, 1632 |
| SseBI | AGGCCT | 1 cut(s) | 804 |
| SspMI | CTAG | 5 cut(s) | 74, 569, 639, 686, 1493 |
| SstI | GAGCTC | 1 cut(s) | 1938 |
| StuI | AGGCCT | 1 cut(s) | 804 |
| StyD4I | CCNGG | 5 cut(s) | 981, 1271, 1324, 1389, 2019 |
| StyI | CCWWGG | 3 cut(s) | 379, 1018, 1623 |
| TaiI | ACGT | 8 cut(s) | 31, 202, 269, 450, 975, 1139, 1309, 1875 |
| TaqI | TCGA | 7 cut(s) | 101, 227, 461, 576, 807, 1038, 1380 |
| TaqII | GACCGA | 1 cut(s) | 946 |
| TasI | AATT | 5 cut(s) | 53, 511, 1143, 1298, 1632 |
| TfiI | GAWTC | 3 cut(s) | 386, 473, 1240 |
| Tru1I | TTAA | 3 cut(s) | 122, 168, 1146 |
| Tru9I | TTAA | 3 cut(s) | 122, 168, 1146 |
| TscAI | CASTG | 6 cut(s) | 27, 316, 472, 728, 823, 1491 |
| TseFI | GTSAC | 3 cut(s) | 1343, 1454, 1504 |
| TseI | GCWGC | 8 cut(s) | 41, 653, 776, 1423, 1885, 2068, 2190, 2195 |
| Tsp45I | GTSAC | 3 cut(s) | 1343, 1454, 1504 |
| TspDTI | ATGAA | 4 cut(s) | 354, 412, 1905, 2159 |
| TspGWI | ACGGA | 2 cut(s) | 522, 1473 |
| TspRI | CASTG | 6 cut(s) | 27, 316, 472, 728, 823, 1491 |
| Tth111I | GACNNNGTC | 1 cut(s) | 605 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 597 |
| VpaK11BI | GGWCC | 5 cut(s) | 929, 1116, 1366, 1670, 2017 |
| VspI | ATTAAT | 1 cut(s) | 122 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1496, 1855 |
| XapI | RAATTY | 1 cut(s) | 511 |
| XceI | RCATGY | 3 cut(s) | 362, 1252, 2062 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1516 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2109 |
| XspI | CTAG | 5 cut(s) | 74, 569, 639, 686, 1493 |
| ZraI | GACGTC | 1 cut(s) | 448 |