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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 784 |
| AccB1I | GGYRCC | 4 cut(s) | 127, 611, 647, 905 |
| AccBSI | CCGCTC | 2 cut(s) | 289, 418 |
| AccI | GTMKAC | 1 cut(s) | 627 |
| AccII | CGCG | 3 cut(s) | 330, 404, 965 |
| AclWI | GGATC | 1 cut(s) | 366 |
| AcoI | YGGCCR | 1 cut(s) | 897 |
| AcvI | CACGTG | 1 cut(s) | 869 |
| AcyI | GRCGYC | 4 cut(s) | 128, 324, 612, 668 |
| AfaI | GTAC | 2 cut(s) | 560, 742 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 37, 174, 737, 782, 817, 859 |
| AflIII | ACRYGT | 1 cut(s) | 630 |
| AgsI | TTSAA | 2 cut(s) | 554, 637 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 921 |
| AjiI | CACGTC | 1 cut(s) | 682 |
| AjnI | CCWGG | 1 cut(s) | 894 |
| AluBI | AGCT | 7 cut(s) | 183, 337, 442, 521, 542, 565, 734 |
| AluI | AGCT | 7 cut(s) | 183, 337, 442, 521, 542, 565, 734 |
| Alw21I | GWGCWC | 1 cut(s) | 185 |
| Alw26I | GTCTC | 5 cut(s) | 208, 228, 265, 385, 908 |
| AlwI | GGATC | 1 cut(s) | 366 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 274 |
| Ama87I | CYCGRG | 2 cut(s) | 615, 933 |
| AoxI | GGCC | 5 cut(s) | 84, 224, 766, 897, 990 |
| ApeKI | GCWGC | 7 cut(s) | 19, 406, 409, 454, 539, 753, 983 |
| AspLEI | GCGC | 5 cut(s) | 15, 130, 406, 614, 967 |
| AspS9I | GGNCC | 7 cut(s) | 67, 85, 691, 767, 786, 828, 939 |
| AsuC2I | CCSGG | 3 cut(s) | 168, 187, 704 |
| AsuHPI | GGTGA | 1 cut(s) | 512 |
| AvaI | CYCGRG | 2 cut(s) | 615, 933 |
| AvaII | GGWCC | 5 cut(s) | 67, 691, 786, 828, 939 |
| BaeGI | GKGCMC | 1 cut(s) | 703 |
| BanI | GGYRCC | 4 cut(s) | 127, 611, 647, 905 |
| BanII | GRGCYC | 1 cut(s) | 185 |
| BbrPI | CACGTG | 1 cut(s) | 869 |
| Bbv12I | GWGCWC | 1 cut(s) | 185 |
| BbvI | GCAGC | 7 cut(s) | 31, 393, 396, 466, 551, 765, 995 |
| BccI | CCATC | 1 cut(s) | 491 |
| BceAI | ACGGC | 3 cut(s) | 533, 919, 959 |
| BciT130I | CCWGG | 1 cut(s) | 896 |
| BcnI | CCSGG | 3 cut(s) | 168, 187, 704 |
| BcoDI | GTCTC | 5 cut(s) | 208, 228, 265, 385, 908 |
| BfaI | CTAG | 1 cut(s) | 362 |
| BfmI | CTRYAG | 3 cut(s) | 410, 537, 735 |
| BfoI | RGCGCY | 3 cut(s) | 16, 131, 615 |
| Bme1390I | CCNGG | 4 cut(s) | 168, 187, 704, 896 |
| Bme18I | GGWCC | 5 cut(s) | 67, 691, 786, 828, 939 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 921 |
| BmeT110I | CYCGRG | 2 cut(s) | 615, 933 |
| BmgBI | CACGTC | 1 cut(s) | 682 |
| BmgT120I | GGNCC | 7 cut(s) | 67, 85, 691, 767, 786, 828, 939 |
| BmrFI | CCNGG | 4 cut(s) | 168, 187, 704, 896 |
| BmrI | ACTGGG | 1 cut(s) | 915 |
| BmsI | GCATC | 1 cut(s) | 107 |
| BmuI | ACTGGG | 1 cut(s) | 915 |
| BpmI | CTGGAG | 4 cut(s) | 23, 190, 902, 954 |
| BpuMI | CCSGG | 3 cut(s) | 168, 187, 704 |
| BsaAI | YACGTR | 1 cut(s) | 869 |
| BsaHI | GRCGYC | 4 cut(s) | 128, 324, 612, 668 |
| BsaI | GGTCTC | 1 cut(s) | 208 |
| BsaJI | CCNNGG | 7 cut(s) | 36, 166, 227, 328, 702, 894, 934 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 37, 174, 737, 782, 817, 859 |
| Bse118I | RCCGGY | 2 cut(s) | 15, 688 |
| Bse1I | ACTGG | 4 cut(s) | 242, 279, 480, 921 |
| BseBI | CCWGG | 1 cut(s) | 896 |
| BseDI | CCNNGG | 7 cut(s) | 36, 166, 227, 328, 702, 894, 934 |
| BseGI | GGATG | 3 cut(s) | 484, 502, 772 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 37, 174, 737, 782, 817, 859 |
| BseMII | CTCAG | 1 cut(s) | 585 |
| BseNI | ACTGG | 4 cut(s) | 242, 279, 480, 921 |
| BseRI | GAGGAG | 2 cut(s) | 53, 56 |
| BseSI | GKGCMC | 1 cut(s) | 703 |
| BseXI | GCAGC | 7 cut(s) | 31, 393, 396, 466, 551, 765, 995 |
| BseYI | CCCAGC | 5 cut(s) | 730, 789, 801, 831, 843 |
| BsgI | GTGCAG | 1 cut(s) | 473 |
| Bsh1236I | CGCG | 3 cut(s) | 330, 404, 965 |
| Bsh1285I | CGRYCG | 2 cut(s) | 959, 963 |
| BshFI | GGCC | 5 cut(s) | 86, 226, 768, 899, 992 |
| BshNI | GGYRCC | 4 cut(s) | 127, 611, 647, 905 |
| BsiEI | CGRYCG | 2 cut(s) | 959, 963 |
| BsiHKAI | GWGCWC | 1 cut(s) | 185 |
| BsiHKCI | CYCGRG | 2 cut(s) | 615, 933 |
| BsiSI | CCGG | 7 cut(s) | 16, 168, 186, 352, 689, 704, 873 |
| BslFI | GGGAC | 3 cut(s) | 306, 772, 814 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 37, 174, 737, 782, 817, 859 |
| BsmAI | GTCTC | 5 cut(s) | 208, 228, 265, 385, 908 |
| BsmFI | GGGAC | 3 cut(s) | 306, 772, 814 |
| BsmI | GAATGC | 1 cut(s) | 346 |
| BsnI | GGCC | 5 cut(s) | 86, 226, 768, 899, 992 |
| Bso31I | GGTCTC | 1 cut(s) | 208 |
| BsoBI | CYCGRG | 2 cut(s) | 615, 933 |
| Bsp1286I | GDGCHC | 2 cut(s) | 185, 703 |
| Bsp143I | GATC | 5 cut(s) | 142, 358, 399, 943, 956 |
| BspANI | GGCC | 5 cut(s) | 86, 226, 768, 899, 992 |
| BspCNI | CTCAG | 1 cut(s) | 586 |
| BspFNI | CGCG | 3 cut(s) | 330, 404, 965 |
| BspMAI | CTGCAG | 2 cut(s) | 414, 541 |
| BspPI | GGATC | 1 cut(s) | 366 |
| BspQI | GCTCTTC | 1 cut(s) | 173 |
| BspT107I | GGYRCC | 4 cut(s) | 127, 611, 647, 905 |
| BspTNI | GGTCTC | 1 cut(s) | 208 |
| BsrBI | CCGCTC | 2 cut(s) | 289, 418 |
| BsrFI | RCCGGY | 2 cut(s) | 15, 688 |
| BsrI | ACTGG | 4 cut(s) | 242, 279, 480, 921 |
| BssAI | RCCGGY | 2 cut(s) | 15, 688 |
| BssECI | CCNNGG | 7 cut(s) | 36, 166, 227, 328, 702, 894, 934 |
| BssMI | GATC | 5 cut(s) | 142, 358, 399, 943, 956 |
| BssNI | GRCGYC | 4 cut(s) | 128, 324, 612, 668 |
| BssT1I | CCWWGG | 1 cut(s) | 227 |
| Bst2UI | CCWGG | 1 cut(s) | 896 |
| Bst4CI | ACNGT | 1 cut(s) | 828 |
| Bst6I | CTCTTC | 2 cut(s) | 45, 173 |
| BstACI | GRCGYC | 4 cut(s) | 128, 324, 612, 668 |
| BstBAI | YACGTR | 1 cut(s) | 869 |
| BstC8I | GCNNGC | 6 cut(s) | 17, 328, 335, 610, 726, 952 |
| BstDEI | CTNAG | 1 cut(s) | 594 |
| BstDSI | CCRYGG | 1 cut(s) | 328 |
| BstF5I | GGATG | 3 cut(s) | 484, 502, 772 |
| BstFNI | CGCG | 3 cut(s) | 330, 404, 965 |
| BstH2I | RGCGCY | 3 cut(s) | 16, 131, 615 |
| BstHHI | GCGC | 5 cut(s) | 15, 130, 406, 614, 967 |
| BstKTI | GATC | 5 cut(s) | 145, 361, 402, 946, 959 |
| BstMAI | GTCTC | 5 cut(s) | 208, 228, 265, 385, 908 |
| BstMBI | GATC | 5 cut(s) | 142, 358, 399, 943, 956 |
| BstMCI | CGRYCG | 2 cut(s) | 959, 963 |
| BstNI | CCWGG | 1 cut(s) | 896 |
| BstNSI | RCATGY | 1 cut(s) | 634 |
| BstSCI | CCNGG | 4 cut(s) | 166, 185, 702, 894 |
| BstSFI | CTRYAG | 3 cut(s) | 410, 537, 735 |
| BstSLI | GKGCMC | 1 cut(s) | 703 |
| BstUI | CGCG | 3 cut(s) | 330, 404, 965 |
| BstV1I | GCAGC | 7 cut(s) | 31, 393, 396, 466, 551, 765, 995 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| BsuRI | GGCC | 5 cut(s) | 86, 226, 768, 899, 992 |
| BtgI | CCRYGG | 1 cut(s) | 328 |
| BtgZI | GCGATG | 1 cut(s) | 602 |
| BtrI | CACGTC | 1 cut(s) | 682 |
| BtsCI | GGATG | 3 cut(s) | 484, 502, 772 |
| BtsI | GCAGTG | 1 cut(s) | 117 |
| BtsIMutI | CAGTG | 2 cut(s) | 117, 145 |
| Cac8I | GCNNGC | 6 cut(s) | 17, 328, 335, 610, 726, 952 |
| CaiI | CAGNNNCTG | 1 cut(s) | 274 |
| CfoI | GCGC | 5 cut(s) | 15, 130, 406, 614, 967 |
| Cfr10I | RCCGGY | 2 cut(s) | 15, 688 |
| Cfr13I | GGNCC | 7 cut(s) | 67, 85, 691, 767, 786, 828, 939 |
| Cfr42I | CCGCGG | 1 cut(s) | 331 |
| CseI | GACGC | 2 cut(s) | 332, 657 |
| Csp6I | GTAC | 2 cut(s) | 559, 741 |
| CviAII | CATG | 1 cut(s) | 631 |
| CviQI | GTAC | 2 cut(s) | 559, 741 |
| DdeI | CTNAG | 1 cut(s) | 594 |
| DinI | GGCGCC | 2 cut(s) | 129, 613 |
| DpnI | GATC | 5 cut(s) | 144, 360, 401, 945, 958 |
| DpnII | GATC | 5 cut(s) | 142, 358, 399, 943, 956 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 784 |
| DriI | GACNNNNNGTC | 1 cut(s) | 921 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 784 |
| EaeI | YGGCCR | 1 cut(s) | 897 |
| Eam1104I | CTCTTC | 2 cut(s) | 45, 173 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 921 |
| EarI | CTCTTC | 2 cut(s) | 45, 173 |
| EciI | GGCGGA | 7 cut(s) | 131, 235, 256, 293, 320, 587, 722 |
| Ecl136II | GAGCTC | 1 cut(s) | 183 |
| Eco130I | CCWWGG | 1 cut(s) | 227 |
| Eco24I | GRGCYC | 1 cut(s) | 185 |
| Eco31I | GGTCTC | 1 cut(s) | 208 |
| Eco47I | GGWCC | 5 cut(s) | 67, 691, 786, 828, 939 |
| Eco53kI | GAGCTC | 1 cut(s) | 183 |
| Eco72I | CACGTG | 1 cut(s) | 869 |
| Eco88I | CYCGRG | 2 cut(s) | 615, 933 |
| EcoICRI | GAGCTC | 1 cut(s) | 183 |
| EcoO109I | RGGNCCY | 1 cut(s) | 786 |
| EcoRII | CCWGG | 1 cut(s) | 894 |
| EcoT14I | CCWWGG | 1 cut(s) | 227 |
| EcoT38I | GRGCYC | 1 cut(s) | 185 |
| EgeI | GGCGCC | 2 cut(s) | 129, 613 |
| EheI | GGCGCC | 2 cut(s) | 129, 613 |
| ErhI | CCWWGG | 1 cut(s) | 227 |
| FaeI | CATG | 1 cut(s) | 634 |
| FaiI | YATR | 4 cut(s) | 318, 579, 632, 911 |
| FaqI | GGGAC | 3 cut(s) | 306, 772, 814 |
| FatI | CATG | 1 cut(s) | 630 |
| FauI | CCCGC | 7 cut(s) | 40, 282, 335, 348, 450, 553, 749 |
| FblI | GTMKAC | 1 cut(s) | 627 |
| FokI | GGATG | 3 cut(s) | 491, 509, 759 |
| FriOI | GRGCYC | 1 cut(s) | 185 |
| FspBI | CTAG | 1 cut(s) | 362 |
| GlaI | GCGC | 5 cut(s) | 14, 129, 405, 613, 966 |
| GsaI | CCCAGC | 5 cut(s) | 734, 793, 805, 835, 847 |
| GsuI | CTGGAG | 4 cut(s) | 23, 190, 902, 954 |
| HaeII | RGCGCY | 3 cut(s) | 16, 131, 615 |
| HaeIII | GGCC | 5 cut(s) | 86, 226, 768, 899, 992 |
| HapII | CCGG | 7 cut(s) | 16, 168, 186, 352, 689, 704, 873 |
| HgaI | GACGC | 2 cut(s) | 332, 657 |
| HhaI | GCGC | 5 cut(s) | 15, 130, 406, 614, 967 |
| Hin1I | GRCGYC | 4 cut(s) | 128, 324, 612, 668 |
| Hin1II | CATG | 1 cut(s) | 634 |
| Hin6I | GCGC | 5 cut(s) | 13, 128, 404, 612, 965 |
| HinP1I | GCGC | 5 cut(s) | 13, 128, 404, 612, 965 |
| HincII | GTYRAC | 1 cut(s) | 74 |
| HindII | GTYRAC | 1 cut(s) | 74 |
| HinfI | GANTC | 4 cut(s) | 26, 149, 461, 916 |
| HpaII | CCGG | 7 cut(s) | 16, 168, 186, 352, 689, 704, 873 |
| HphI | GGTGA | 1 cut(s) | 512 |
| Hpy166II | GTNNAC | 2 cut(s) | 74, 628 |
| Hpy188I | TCNGA | 6 cut(s) | 199, 777, 817, 859, 927, 943 |
| Hpy188III | TCNNGA | 5 cut(s) | 146, 207, 362, 694, 881 |
| Hpy8I | GTNNAC | 2 cut(s) | 74, 628 |
| Hpy99I | CGWCG | 5 cut(s) | 781, 817, 859, 905, 980 |
| HpyAV | CCTTC | 6 cut(s) | 76, 97, 163, 598, 637, 776 |
| HpyCH4III | ACNGT | 1 cut(s) | 828 |
| HpyCH4IV | ACGT | 3 cut(s) | 624, 681, 868 |
| HpyCH4V | TGCA | 4 cut(s) | 110, 412, 454, 539 |
| HpyF3I | CTNAG | 1 cut(s) | 594 |
| HpySE526I | ACGT | 3 cut(s) | 624, 681, 868 |
| Hsp92I | GRCGYC | 4 cut(s) | 128, 324, 612, 668 |
| Hsp92II | CATG | 1 cut(s) | 634 |
| HspAI | GCGC | 5 cut(s) | 13, 128, 404, 612, 965 |
| KasI | GGCGCC | 2 cut(s) | 127, 611 |
| KflI | GGGWCCC | 1 cut(s) | 786 |
| KroI | GCCGGC | 1 cut(s) | 15 |
| KroNI | GCCGGC | 1 cut(s) | 17 |
| KspI | CCGCGG | 1 cut(s) | 331 |
| Kzo9I | GATC | 5 cut(s) | 142, 358, 399, 943, 956 |
| LguI | GCTCTTC | 1 cut(s) | 173 |
| LmnI | GCTCC | 5 cut(s) | 188, 391, 415, 547, 709 |
| Lsp1109I | GCAGC | 7 cut(s) | 31, 393, 396, 466, 551, 765, 995 |
| LweI | GCATC | 1 cut(s) | 107 |
| MaeI | CTAG | 1 cut(s) | 362 |
| MaeII | ACGT | 3 cut(s) | 624, 681, 868 |
| MaeIII | GTNAC | 3 cut(s) | 669, 822, 864 |
| MalI | GATC | 5 cut(s) | 144, 360, 401, 945, 958 |
| MbiI | CCGCTC | 2 cut(s) | 289, 418 |
| MboI | GATC | 5 cut(s) | 142, 358, 399, 943, 956 |
| MboII | GAAGA | 5 cut(s) | 19, 59, 62, 190, 202 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MhlI | GDGCHC | 2 cut(s) | 185, 703 |
| Mly113I | GGCGCC | 2 cut(s) | 128, 612 |
| MlyI | GAGTC | 4 cut(s) | 20, 143, 470, 910 |
| MmeI | TCCRAC | 5 cut(s) | 369, 795, 800, 837, 950 |
| MroNI | GCCGGC | 1 cut(s) | 15 |
| MslI | CAYNNNNRTG | 1 cut(s) | 449 |
| MspA1I | CMGCKG | 5 cut(s) | 330, 457, 734, 756, 1005 |
| MspI | CCGG | 7 cut(s) | 16, 168, 186, 352, 689, 704, 873 |
| MspR9I | CCNGG | 4 cut(s) | 168, 187, 704, 896 |
| Mva1269I | GAATGC | 1 cut(s) | 346 |
| MvaI | CCWGG | 1 cut(s) | 896 |
| MvnI | CGCG | 3 cut(s) | 330, 404, 965 |
| NaeI | GCCGGC | 1 cut(s) | 17 |
| NarI | GGCGCC | 2 cut(s) | 128, 612 |
| NciI | CCSGG | 3 cut(s) | 168, 187, 704 |
| NdeII | GATC | 5 cut(s) | 142, 358, 399, 943, 956 |
| NgoMIV | GCCGGC | 1 cut(s) | 15 |
| NlaIII | CATG | 1 cut(s) | 634 |
| NmeAIII | GCCGAG | 1 cut(s) | 61 |
| NmuCI | GTSAC | 3 cut(s) | 669, 822, 864 |
| NspI | RCATGY | 1 cut(s) | 634 |
| PciI | ACATGT | 1 cut(s) | 630 |
| PciSI | GCTCTTC | 1 cut(s) | 173 |
| PctI | GAATGC | 1 cut(s) | 346 |
| PdiI | GCCGGC | 1 cut(s) | 17 |
| PflFI | GACNNNGTC | 2 cut(s) | 811, 853 |
| PfoI | TCCNGGA | 1 cut(s) | 185 |
| Ple19I | CGATCG | 1 cut(s) | 959 |
| PleI | GAGTC | 4 cut(s) | 20, 143, 469, 910 |
| PluTI | GGCGCC | 2 cut(s) | 131, 615 |
| PmaCI | CACGTG | 1 cut(s) | 869 |
| PmlI | CACGTG | 1 cut(s) | 869 |
| PpsI | GAGTC | 4 cut(s) | 20, 143, 469, 910 |
| Ppu21I | YACGTR | 1 cut(s) | 869 |
| PpuMI | RGGWCCY | 1 cut(s) | 786 |
| PscI | ACATGT | 1 cut(s) | 630 |
| Psp124BI | GAGCTC | 1 cut(s) | 185 |
| Psp5II | RGGWCCY | 1 cut(s) | 786 |
| Psp6I | CCWGG | 1 cut(s) | 894 |
| PspCI | CACGTG | 1 cut(s) | 869 |
| PspFI | CCCAGC | 5 cut(s) | 730, 789, 801, 831, 843 |
| PspGI | CCWGG | 1 cut(s) | 894 |
| PspPI | GGNCC | 7 cut(s) | 67, 85, 691, 767, 786, 828, 939 |
| PspPPI | RGGWCCY | 1 cut(s) | 786 |
| PstI | CTGCAG | 2 cut(s) | 414, 541 |
| PstNI | CAGNNNCTG | 1 cut(s) | 274 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| PsyI | GACNNNGTC | 2 cut(s) | 811, 853 |
| PvuI | CGATCG | 1 cut(s) | 959 |
| PvuII | CAGCTG | 1 cut(s) | 734 |
| RsaI | GTAC | 2 cut(s) | 560, 742 |
| RsaNI | GTAC | 2 cut(s) | 559, 741 |
| RseI | CAYNNNNRTG | 1 cut(s) | 449 |
| SacI | GAGCTC | 1 cut(s) | 185 |
| SacII | CCGCGG | 1 cut(s) | 331 |
| SapI | GCTCTTC | 1 cut(s) | 173 |
| Sau3AI | GATC | 5 cut(s) | 142, 358, 399, 943, 956 |
| Sau96I | GGNCC | 7 cut(s) | 67, 85, 691, 767, 786, 828, 939 |
| SchI | GAGTC | 4 cut(s) | 20, 143, 470, 910 |
| ScrFI | CCNGG | 4 cut(s) | 168, 187, 704, 896 |
| SduI | GDGCHC | 2 cut(s) | 185, 703 |
| SfaNI | GCATC | 1 cut(s) | 107 |
| SfcI | CTRYAG | 3 cut(s) | 410, 537, 735 |
| SfoI | GGCGCC | 2 cut(s) | 129, 613 |
| Sfr303I | CCGCGG | 1 cut(s) | 331 |
| SgrBI | CCGCGG | 1 cut(s) | 331 |
| SinI | GGWCC | 5 cut(s) | 67, 691, 786, 828, 939 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 449 |
| SspDI | GGCGCC | 2 cut(s) | 127, 611 |
| SspMI | CTAG | 1 cut(s) | 362 |
| SstI | GAGCTC | 1 cut(s) | 185 |
| StyD4I | CCNGG | 4 cut(s) | 166, 185, 702, 894 |
| StyI | CCWWGG | 1 cut(s) | 227 |
| TaaI | ACNGT | 1 cut(s) | 828 |
| TaiI | ACGT | 3 cut(s) | 627, 684, 871 |
| TaqI | TCGA | 4 cut(s) | 101, 248, 285, 978 |
| TaqII | GACCGA | 1 cut(s) | 949 |
| TauI | GCSGC | 7 cut(s) | 333, 347, 428, 470, 493, 602, 688 |
| TscAI | CASTG | 2 cut(s) | 117, 145 |
| TseFI | GTSAC | 3 cut(s) | 669, 822, 864 |
| TseI | GCWGC | 7 cut(s) | 19, 406, 409, 454, 539, 753, 983 |
| Tsp45I | GTSAC | 3 cut(s) | 669, 822, 864 |
| TspDTI | ATGAA | 2 cut(s) | 387, 500 |
| TspGWI | ACGGA | 2 cut(s) | 59, 794 |
| TspRI | CASTG | 2 cut(s) | 117, 145 |
| Tth111I | GACNNNGTC | 2 cut(s) | 811, 853 |
| VpaK11BI | GGWCC | 5 cut(s) | 67, 691, 786, 828, 939 |
| XbaI | TCTAGA | 1 cut(s) | 361 |
| XceI | RCATGY | 1 cut(s) | 634 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 234 |
| XmiI | GTMKAC | 1 cut(s) | 627 |
| XspI | CTAG | 1 cut(s) | 362 |