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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 495 |
| AccBSI | CCGCTC | 1 cut(s) | 369 |
| AccI | GTMKAC | 1 cut(s) | 407 |
| AcoI | YGGCCR | 2 cut(s) | 12, 264 |
| AcuI | CTGAAG | 1 cut(s) | 275 |
| AfaI | GTAC | 1 cut(s) | 416 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 85, 355, 495 |
| AgsI | TTSAA | 1 cut(s) | 400 |
| AleI | CACNNNNGTG | 1 cut(s) | 105 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 80, 112 |
| AluBI | AGCT | 5 cut(s) | 183, 204, 247, 352, 469 |
| AluI | AGCT | 5 cut(s) | 183, 204, 247, 352, 469 |
| Alw21I | GWGCWC | 1 cut(s) | 185 |
| AoxI | GGCC | 4 cut(s) | 12, 264, 378, 444 |
| ApeKI | GCWGC | 3 cut(s) | 150, 305, 344 |
| AspLEI | GCGC | 1 cut(s) | 488 |
| AspS9I | GGNCC | 2 cut(s) | 138, 513 |
| AsuC2I | CCSGG | 1 cut(s) | 511 |
| AsuHPI | GGTGA | 1 cut(s) | 334 |
| AvaII | GGWCC | 2 cut(s) | 138, 513 |
| AxyI | CCTNAGG | 1 cut(s) | 155 |
| BanII | GRGCYC | 1 cut(s) | 185 |
| Bbv12I | GWGCWC | 1 cut(s) | 185 |
| BbvCI | CCTCAGC | 1 cut(s) | 375 |
| BbvI | GCAGC | 3 cut(s) | 162, 292, 331 |
| BccI | CCATC | 2 cut(s) | 253, 424 |
| BceAI | ACGGC | 1 cut(s) | 426 |
| BcnI | CCSGG | 1 cut(s) | 511 |
| BfoI | RGCGCY | 1 cut(s) | 489 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 20 |
| BisI | GCNGC | 8 cut(s) | 12, 151, 264, 306, 345, 381, 384, 438 |
| BlsI | GCNGC | 8 cut(s) | 13, 152, 265, 307, 346, 382, 385, 439 |
| Bme1390I | CCNGG | 1 cut(s) | 511 |
| Bme18I | GGWCC | 2 cut(s) | 138, 513 |
| BmgT120I | GGNCC | 2 cut(s) | 138, 513 |
| BmiI | GGNNCC | 3 cut(s) | 139, 140, 514 |
| BmrFI | CCNGG | 1 cut(s) | 511 |
| BmsI | GCATC | 2 cut(s) | 382, 424 |
| BpmI | CTGGAG | 3 cut(s) | 247, 374, 502 |
| Bpu10I | CCTNAGC | 1 cut(s) | 375 |
| BpuEI | CTTGAG | 1 cut(s) | 200 |
| BpuMI | CCSGG | 1 cut(s) | 511 |
| BsaJI | CCNNGG | 3 cut(s) | 6, 267, 318 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 80, 110 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 85, 355, 495 |
| Bse118I | RCCGGY | 1 cut(s) | 446 |
| Bse1I | ACTGG | 2 cut(s) | 15, 230 |
| Bse21I | CCTNAGG | 1 cut(s) | 155 |
| BseDI | CCNNGG | 3 cut(s) | 6, 267, 318 |
| BseGI | GGATG | 2 cut(s) | 397, 439 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 85, 355, 495 |
| BseMII | CTCAG | 4 cut(s) | 54, 72, 146, 366 |
| BseNI | ACTGG | 2 cut(s) | 15, 230 |
| BseRI | GAGGAG | 1 cut(s) | 193 |
| BseXI | GCAGC | 3 cut(s) | 162, 292, 331 |
| BseYI | CCCAGC | 2 cut(s) | 115, 348 |
| BsgI | GTGCAG | 1 cut(s) | 47 |
| BshFI | GGCC | 4 cut(s) | 14, 266, 380, 446 |
| BsiHKAI | GWGCWC | 1 cut(s) | 185 |
| BsiSI | CCGG | 2 cut(s) | 447, 510 |
| BslFI | GGGAC | 1 cut(s) | 151 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 85, 355, 495 |
| BsmFI | GGGAC | 1 cut(s) | 151 |
| BsnI | GGCC | 4 cut(s) | 14, 266, 380, 446 |
| Bsp1286I | GDGCHC | 1 cut(s) | 185 |
| Bsp143I | GATC | 1 cut(s) | 37 |
| Bsp19I | CCATGG | 1 cut(s) | 6 |
| BspANI | GGCC | 4 cut(s) | 14, 266, 380, 446 |
| BspCNI | CTCAG | 4 cut(s) | 55, 73, 147, 367 |
| BspLI | GGNNCC | 3 cut(s) | 139, 140, 514 |
| BspQI | GCTCTTC | 1 cut(s) | 359 |
| BsrBI | CCGCTC | 1 cut(s) | 369 |
| BsrFI | RCCGGY | 1 cut(s) | 446 |
| BsrI | ACTGG | 2 cut(s) | 15, 230 |
| BssAI | RCCGGY | 1 cut(s) | 446 |
| BssECI | CCNNGG | 3 cut(s) | 6, 267, 318 |
| BssMI | GATC | 1 cut(s) | 37 |
| BssT1I | CCWWGG | 2 cut(s) | 6, 267 |
| Bst6I | CTCTTC | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 2 cut(s) | 202, 423 |
| BstDEI | CTNAG | 4 cut(s) | 63, 81, 155, 375 |
| BstDSI | CCRYGG | 1 cut(s) | 6 |
| BstF5I | GGATG | 2 cut(s) | 397, 439 |
| BstH2I | RGCGCY | 1 cut(s) | 489 |
| BstHHI | GCGC | 1 cut(s) | 488 |
| BstKTI | GATC | 1 cut(s) | 40 |
| BstMBI | GATC | 1 cut(s) | 37 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 20, 171, 180, 253, 314, 380, 392, 443 |
| BstSCI | CCNGG | 1 cut(s) | 509 |
| BstV1I | GCAGC | 3 cut(s) | 162, 292, 331 |
| Bsu36I | CCTNAGG | 1 cut(s) | 155 |
| BsuRI | GGCC | 4 cut(s) | 14, 266, 380, 446 |
| BtgI | CCRYGG | 1 cut(s) | 6 |
| BtsCI | GGATG | 2 cut(s) | 397, 439 |
| BtsI | GCAGTG | 1 cut(s) | 30 |
| BtsIMutI | CAGTG | 2 cut(s) | 22, 30 |
| Cac8I | GCNNGC | 2 cut(s) | 202, 423 |
| CfoI | GCGC | 1 cut(s) | 488 |
| Cfr10I | RCCGGY | 1 cut(s) | 446 |
| Cfr13I | GGNCC | 2 cut(s) | 138, 513 |
| CseI | GACGC | 1 cut(s) | 495 |
| Csp6I | GTAC | 1 cut(s) | 415 |
| CviAII | CATG | 2 cut(s) | 7, 134 |
| CviQI | GTAC | 1 cut(s) | 415 |
| DdeI | CTNAG | 4 cut(s) | 63, 81, 155, 375 |
| DpnI | GATC | 1 cut(s) | 39 |
| DpnII | GATC | 1 cut(s) | 37 |
| EaeI | YGGCCR | 2 cut(s) | 12, 264 |
| Eam1104I | CTCTTC | 1 cut(s) | 359 |
| EarI | CTCTTC | 1 cut(s) | 359 |
| EciI | GGCGGA | 2 cut(s) | 304, 374 |
| Ecl136II | GAGCTC | 1 cut(s) | 183 |
| Eco130I | CCWWGG | 2 cut(s) | 6, 267 |
| Eco24I | GRGCYC | 1 cut(s) | 185 |
| Eco47I | GGWCC | 2 cut(s) | 138, 513 |
| Eco53kI | GAGCTC | 1 cut(s) | 183 |
| Eco57I | CTGAAG | 1 cut(s) | 275 |
| Eco81I | CCTNAGG | 1 cut(s) | 155 |
| EcoICRI | GAGCTC | 1 cut(s) | 183 |
| EcoO109I | RGGNCCY | 2 cut(s) | 138, 513 |
| EcoT14I | CCWWGG | 2 cut(s) | 6, 267 |
| EcoT38I | GRGCYC | 1 cut(s) | 185 |
| ErhI | CCWWGG | 2 cut(s) | 6, 267 |
| FaeI | CATG | 2 cut(s) | 10, 137 |
| FaiI | YATR | 5 cut(s) | 8, 43, 60, 135, 389 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 410, 442 |
| FaqI | GGGAC | 1 cut(s) | 151 |
| FatI | CATG | 2 cut(s) | 6, 133 |
| FauI | CCCGC | 1 cut(s) | 167 |
| FblI | GTMKAC | 1 cut(s) | 407 |
| Fnu4HI | GCNGC | 8 cut(s) | 12, 151, 264, 306, 345, 381, 384, 438 |
| FokI | GGATG | 2 cut(s) | 404, 446 |
| FriOI | GRGCYC | 1 cut(s) | 185 |
| Fsp4HI | GCNGC | 8 cut(s) | 12, 151, 264, 306, 345, 381, 384, 438 |
| GlaI | GCGC | 1 cut(s) | 487 |
| GluI | GCNGC | 8 cut(s) | 12, 151, 264, 306, 345, 381, 384, 438 |
| GsaI | CCCAGC | 2 cut(s) | 119, 352 |
| GsuI | CTGGAG | 3 cut(s) | 247, 374, 502 |
| HaeII | RGCGCY | 1 cut(s) | 489 |
| HaeIII | GGCC | 4 cut(s) | 14, 266, 380, 446 |
| HapII | CCGG | 2 cut(s) | 447, 510 |
| HgaI | GACGC | 1 cut(s) | 495 |
| HhaI | GCGC | 1 cut(s) | 488 |
| Hin1II | CATG | 2 cut(s) | 10, 137 |
| Hin6I | GCGC | 1 cut(s) | 486 |
| HinP1I | GCGC | 1 cut(s) | 486 |
| HinfI | GANTC | 2 cut(s) | 211, 299 |
| HpaII | CCGG | 2 cut(s) | 447, 510 |
| HphI | GGTGA | 1 cut(s) | 334 |
| Hpy166II | GTNNAC | 1 cut(s) | 408 |
| Hpy188I | TCNGA | 1 cut(s) | 294 |
| Hpy188III | TCNNGA | 1 cut(s) | 70 |
| Hpy8I | GTNNAC | 1 cut(s) | 408 |
| HpyAV | CCTTC | 2 cut(s) | 406, 436 |
| HpyCH4IV | ACGT | 1 cut(s) | 462 |
| HpyCH4V | TGCA | 2 cut(s) | 28, 133 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 20, 171, 180, 253, 314, 380, 392, 443 |
| HpyF3I | CTNAG | 4 cut(s) | 63, 81, 155, 375 |
| HpySE526I | ACGT | 1 cut(s) | 462 |
| Hsp92II | CATG | 2 cut(s) | 10, 137 |
| HspAI | GCGC | 1 cut(s) | 486 |
| KflI | GGGWCCC | 1 cut(s) | 138 |
| Kzo9I | GATC | 1 cut(s) | 37 |
| LguI | GCTCTTC | 1 cut(s) | 359 |
| LmnI | GCTCC | 3 cut(s) | 180, 466, 483 |
| Lsp1109I | GCAGC | 3 cut(s) | 162, 292, 331 |
| LweI | GCATC | 2 cut(s) | 382, 424 |
| MaeII | ACGT | 1 cut(s) | 462 |
| MalI | GATC | 1 cut(s) | 39 |
| MbiI | CCGCTC | 1 cut(s) | 369 |
| MboI | GATC | 1 cut(s) | 37 |
| MboII | GAAGA | 2 cut(s) | 281, 376 |
| MhlI | GDGCHC | 1 cut(s) | 185 |
| MlyI | GAGTC | 1 cut(s) | 293 |
| MseI | TTAA | 1 cut(s) | 273 |
| MslI | CAYNNNNRTG | 1 cut(s) | 105 |
| MspA1I | CMGCKG | 3 cut(s) | 165, 247, 352 |
| MspI | CCGG | 2 cut(s) | 447, 510 |
| MspR9I | CCNGG | 1 cut(s) | 511 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 20, 171, 180, 253, 314, 380, 392, 443 |
| NciI | CCSGG | 1 cut(s) | 511 |
| NcoI | CCATGG | 1 cut(s) | 6 |
| NdeII | GATC | 1 cut(s) | 37 |
| NlaIII | CATG | 2 cut(s) | 10, 137 |
| NlaIV | GGNNCC | 3 cut(s) | 139, 140, 514 |
| NmeAIII | GCCGAG | 1 cut(s) | 343 |
| OliI | CACNNNNGTG | 1 cut(s) | 105 |
| PciSI | GCTCTTC | 1 cut(s) | 359 |
| PfeI | GAWTC | 1 cut(s) | 211 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 495 |
| PkrI | GCNGC | 8 cut(s) | 13, 152, 265, 307, 346, 382, 385, 439 |
| PleI | GAGTC | 1 cut(s) | 293 |
| PpsI | GAGTC | 1 cut(s) | 293 |
| PpuMI | RGGWCCY | 2 cut(s) | 138, 513 |
| Psp124BI | GAGCTC | 1 cut(s) | 185 |
| Psp5II | RGGWCCY | 2 cut(s) | 138, 513 |
| PspFI | CCCAGC | 2 cut(s) | 115, 348 |
| PspN4I | GGNNCC | 3 cut(s) | 139, 140, 514 |
| PspPI | GGNCC | 2 cut(s) | 138, 513 |
| PspPPI | RGGWCCY | 2 cut(s) | 138, 513 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 50, 82 |
| PvuII | CAGCTG | 2 cut(s) | 247, 352 |
| RsaI | GTAC | 1 cut(s) | 416 |
| RsaNI | GTAC | 1 cut(s) | 415 |
| RseI | CAYNNNNRTG | 1 cut(s) | 105 |
| SacI | GAGCTC | 1 cut(s) | 185 |
| SapI | GCTCTTC | 1 cut(s) | 359 |
| SaqAI | TTAA | 1 cut(s) | 273 |
| SatI | GCNGC | 8 cut(s) | 12, 151, 264, 306, 345, 381, 384, 438 |
| Sau3AI | GATC | 1 cut(s) | 37 |
| Sau96I | GGNCC | 2 cut(s) | 138, 513 |
| SchI | GAGTC | 1 cut(s) | 293 |
| ScrFI | CCNGG | 1 cut(s) | 511 |
| SduI | GDGCHC | 1 cut(s) | 185 |
| SfaNI | GCATC | 2 cut(s) | 382, 424 |
| SinI | GGWCC | 2 cut(s) | 138, 513 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 105 |
| SmlI | CTYRAG | 1 cut(s) | 215 |
| SmoI | CTYRAG | 1 cut(s) | 215 |
| SstI | GAGCTC | 1 cut(s) | 185 |
| StyD4I | CCNGG | 1 cut(s) | 509 |
| StyI | CCWWGG | 2 cut(s) | 6, 267 |
| TaiI | ACGT | 1 cut(s) | 465 |
| TaqI | TCGA | 1 cut(s) | 185 |
| TaqII | GACCGA | 1 cut(s) | 89 |
| TauI | GCSGC | 5 cut(s) | 14, 266, 383, 386, 440 |
| TfiI | GAWTC | 1 cut(s) | 211 |
| Tru1I | TTAA | 1 cut(s) | 273 |
| Tru9I | TTAA | 1 cut(s) | 273 |
| TscAI | CASTG | 2 cut(s) | 22, 30 |
| TseI | GCWGC | 3 cut(s) | 150, 305, 344 |
| TspRI | CASTG | 2 cut(s) | 22, 30 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 495 |
| VpaK11BI | GGWCC | 2 cut(s) | 138, 513 |
| XmiI | GTMKAC | 1 cut(s) | 407 |