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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 535 |
| AccB1I | GGYRCC | 5 cut(s) | 496, 535, 1047, 1301, 1337 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1347 |
| AccBSI | CCGCTC | 6 cut(s) | 116, 777, 853, 1045, 1066, 1412 |
| AccI | GTMKAC | 1 cut(s) | 890 |
| AccII | CGCG | 8 cut(s) | 156, 250, 315, 482, 502, 531, 631, 1533 |
| AccIII | TCCGGA | 1 cut(s) | 353 |
| AclI | AACGTT | 1 cut(s) | 1032 |
| AclWI | GGATC | 1 cut(s) | 1113 |
| AcoI | YGGCCR | 4 cut(s) | 1113, 1230, 1394, 1635 |
| AcuI | CTGAAG | 3 cut(s) | 623, 898, 1674 |
| AcyI | GRCGYC | 5 cut(s) | 497, 967, 1014, 1338, 1508 |
| AfaI | GTAC | 6 cut(s) | 50, 537, 628, 772, 1268, 1408 |
| AflIII | ACRYGT | 2 cut(s) | 248, 1089 |
| AgsI | TTSAA | 2 cut(s) | 298, 1244 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1584 |
| AjiI | CACGTC | 2 cut(s) | 754, 934 |
| AjnI | CCWGG | 3 cut(s) | 333, 959, 1438 |
| AleI | CACNNNNGTG | 1 cut(s) | 752 |
| AluBI | AGCT | 8 cut(s) | 226, 236, 731, 995, 1027, 1078, 1310, 1391 |
| AluI | AGCT | 8 cut(s) | 226, 236, 731, 995, 1027, 1078, 1310, 1391 |
| Alw21I | GWGCWC | 2 cut(s) | 517, 1059 |
| Alw26I | GTCTC | 3 cut(s) | 254, 1533, 1571 |
| AlwI | GGATC | 1 cut(s) | 1113 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 981 |
| Ama87I | CYCGRG | 5 cut(s) | 737, 1052, 1459, 1557, 1596 |
| Aor13HI | TCCGGA | 1 cut(s) | 353 |
| AoxI | GGCC | 9 cut(s) | 339, 699, 1113, 1219, 1230, 1394, 1548, 1635, 1669 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 637, 669 |
| Asp718I | GGTACC | 1 cut(s) | 535 |
| AspLEI | GCGC | 8 cut(s) | 317, 388, 482, 499, 531, 555, 1340, 1535 |
| AspS9I | GGNCC | 8 cut(s) | 60, 310, 370, 474, 633, 699, 1219, 1549 |
| AsuC2I | CCSGG | 4 cut(s) | 217, 697, 1558, 1559 |
| AsuHPI | GGTGA | 6 cut(s) | 458, 685, 833, 833, 1202, 1505 |
| AvaI | CYCGRG | 5 cut(s) | 737, 1052, 1459, 1557, 1596 |
| AvaII | GGWCC | 5 cut(s) | 60, 310, 370, 474, 633 |
| BaeGI | GKGCMC | 2 cut(s) | 933, 1306 |
| BanI | GGYRCC | 5 cut(s) | 496, 535, 1047, 1301, 1337 |
| BanII | GRGCYC | 2 cut(s) | 395, 1456 |
| BauI | CACGAG | 1 cut(s) | 138 |
| Bbv12I | GWGCWC | 2 cut(s) | 517, 1059 |
| BccI | CCATC | 4 cut(s) | 601, 1349, 1387, 1559 |
| BceAI | ACGGC | 6 cut(s) | 51, 239, 270, 574, 923, 1142 |
| BciT130I | CCWGG | 3 cut(s) | 335, 961, 1440 |
| BcnI | CCSGG | 4 cut(s) | 217, 697, 1558, 1559 |
| BcoDI | GTCTC | 3 cut(s) | 254, 1533, 1571 |
| BfaI | CTAG | 2 cut(s) | 1184, 1307 |
| BfmI | CTRYAG | 2 cut(s) | 759, 1325 |
| BfoI | RGCGCY | 3 cut(s) | 389, 500, 1341 |
| BlpI | GCTNAGC | 1 cut(s) | 389 |
| Bme1390I | CCNGG | 7 cut(s) | 217, 335, 697, 961, 1440, 1558, 1559 |
| Bme18I | GGWCC | 5 cut(s) | 60, 310, 370, 474, 633 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1584 |
| BmeT110I | CYCGRG | 5 cut(s) | 737, 1052, 1459, 1557, 1596 |
| BmgBI | CACGTC | 2 cut(s) | 754, 934 |
| BmgT120I | GGNCC | 8 cut(s) | 60, 310, 370, 474, 633, 699, 1219, 1549 |
| BmrFI | CCNGG | 7 cut(s) | 217, 335, 697, 961, 1440, 1558, 1559 |
| BmrI | ACTGGG | 3 cut(s) | 1357, 1510, 1578 |
| BmsI | GCATC | 4 cut(s) | 174, 994, 1311, 1639 |
| BmuI | ACTGGG | 3 cut(s) | 1357, 1510, 1578 |
| BoxI | GACNNNNGTC | 1 cut(s) | 896 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1481, 1513 |
| BpmI | CTGGAG | 3 cut(s) | 356, 642, 1100 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1119 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 389 |
| BpuMI | CCSGG | 4 cut(s) | 217, 697, 1558, 1559 |
| BsaHI | GRCGYC | 5 cut(s) | 497, 967, 1014, 1338, 1508 |
| BsaI | GGTCTC | 1 cut(s) | 1571 |
| BsaWI | WCCGGW | 1 cut(s) | 353 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 65, 95, 329, 359, 821, 851 |
| Bse118I | RCCGGY | 3 cut(s) | 517, 1633, 1667 |
| Bse1I | ACTGG | 7 cut(s) | 14, 201, 363, 1352, 1516, 1584, 1641 |
| Bse3DI | GCAATG | 2 cut(s) | 27, 312 |
| BseAI | TCCGGA | 1 cut(s) | 353 |
| BseBI | CCWGG | 3 cut(s) | 335, 961, 1440 |
| BseGI | GGATG | 2 cut(s) | 1570, 1624 |
| BseMI | GCAATG | 2 cut(s) | 27, 312 |
| BseMII | CTCAG | 3 cut(s) | 380, 1161, 1514 |
| BseNI | ACTGG | 7 cut(s) | 14, 201, 363, 1352, 1516, 1584, 1641 |
| BseSI | GKGCMC | 2 cut(s) | 933, 1306 |
| BseX3I | CGGCCG | 1 cut(s) | 1635 |
| BseYI | CCCAGC | 3 cut(s) | 669, 856, 1535 |
| BsgI | GTGCAG | 1 cut(s) | 1394 |
| Bsh1236I | CGCG | 8 cut(s) | 156, 250, 315, 482, 502, 531, 631, 1533 |
| Bsh1285I | CGRYCG | 3 cut(s) | 890, 1371, 1638 |
| BshFI | GGCC | 9 cut(s) | 341, 701, 1115, 1221, 1232, 1396, 1550, 1637, 1671 |
| BshNI | GGYRCC | 5 cut(s) | 496, 535, 1047, 1301, 1337 |
| BsiEI | CGRYCG | 3 cut(s) | 890, 1371, 1638 |
| BsiHKAI | GWGCWC | 2 cut(s) | 517, 1059 |
| BsiHKCI | CYCGRG | 5 cut(s) | 737, 1052, 1459, 1557, 1596 |
| BsiSI | CCGG | 7 cut(s) | 216, 354, 518, 696, 1558, 1634, 1668 |
| BslFI | GGGAC | 3 cut(s) | 487, 1078, 1572 |
| BsmAI | GTCTC | 3 cut(s) | 254, 1533, 1571 |
| BsmFI | GGGAC | 3 cut(s) | 487, 1078, 1572 |
| BsnI | GGCC | 9 cut(s) | 341, 701, 1115, 1221, 1232, 1396, 1550, 1637, 1671 |
| Bso31I | GGTCTC | 1 cut(s) | 1571 |
| BsoBI | CYCGRG | 5 cut(s) | 737, 1052, 1459, 1557, 1596 |
| Bsp1286I | GDGCHC | 6 cut(s) | 395, 517, 933, 1059, 1306, 1456 |
| Bsp13I | TCCGGA | 1 cut(s) | 353 |
| Bsp143I | GATC | 3 cut(s) | 1105, 1137, 1173 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 389 |
| BspANI | GGCC | 9 cut(s) | 341, 701, 1115, 1221, 1232, 1396, 1550, 1637, 1671 |
| BspCNI | CTCAG | 3 cut(s) | 381, 1162, 1513 |
| BspEI | TCCGGA | 1 cut(s) | 353 |
| BspFNI | CGCG | 8 cut(s) | 156, 250, 315, 482, 502, 531, 631, 1533 |
| BspMAI | CTGCAG | 1 cut(s) | 1329 |
| BspPI | GGATC | 1 cut(s) | 1113 |
| BspT107I | GGYRCC | 5 cut(s) | 496, 535, 1047, 1301, 1337 |
| BspTNI | GGTCTC | 1 cut(s) | 1571 |
| BsrBI | CCGCTC | 6 cut(s) | 116, 777, 853, 1045, 1066, 1412 |
| BsrDI | GCAATG | 2 cut(s) | 27, 312 |
| BsrFI | RCCGGY | 3 cut(s) | 517, 1633, 1667 |
| BsrI | ACTGG | 7 cut(s) | 14, 201, 363, 1352, 1516, 1584, 1641 |
| BssAI | RCCGGY | 3 cut(s) | 517, 1633, 1667 |
| BssMI | GATC | 3 cut(s) | 1105, 1137, 1173 |
| BssNI | GRCGYC | 5 cut(s) | 497, 967, 1014, 1338, 1508 |
| BssSI | CACGAG | 1 cut(s) | 138 |
| BssT1I | CCWWGG | 1 cut(s) | 1293 |
| Bst2BI | CACGAG | 1 cut(s) | 138 |
| Bst2UI | CCWGG | 3 cut(s) | 335, 961, 1440 |
| Bst4CI | ACNGT | 3 cut(s) | 821, 1240, 1573 |
| Bst6I | CTCTTC | 2 cut(s) | 141, 675 |
| BstACI | GRCGYC | 5 cut(s) | 497, 967, 1014, 1338, 1508 |
| BstDEI | CTNAG | 4 cut(s) | 389, 1119, 1170, 1500 |
| BstDSI | CCRYGG | 4 cut(s) | 33, 408, 500, 1018 |
| BstEII | GGTNACC | 1 cut(s) | 691 |
| BstF5I | GGATG | 2 cut(s) | 1570, 1624 |
| BstFNI | CGCG | 8 cut(s) | 156, 250, 315, 482, 502, 531, 631, 1533 |
| BstH2I | RGCGCY | 3 cut(s) | 389, 500, 1341 |
| BstHHI | GCGC | 8 cut(s) | 317, 388, 482, 499, 531, 555, 1340, 1535 |
| BstKTI | GATC | 3 cut(s) | 1108, 1140, 1176 |
| BstMAI | GTCTC | 3 cut(s) | 254, 1533, 1571 |
| BstMBI | GATC | 3 cut(s) | 1105, 1137, 1173 |
| BstMCI | CGRYCG | 3 cut(s) | 890, 1371, 1638 |
| BstNI | CCWGG | 3 cut(s) | 335, 961, 1440 |
| BstNSI | RCATGY | 1 cut(s) | 1093 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 896 |
| BstPI | GGTNACC | 1 cut(s) | 691 |
| BstSCI | CCNGG | 7 cut(s) | 215, 333, 695, 959, 1438, 1556, 1557 |
| BstSFI | CTRYAG | 2 cut(s) | 759, 1325 |
| BstSLI | GKGCMC | 2 cut(s) | 933, 1306 |
| BstUI | CGCG | 8 cut(s) | 156, 250, 315, 482, 502, 531, 631, 1533 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 754 |
| BstZI | CGGCCG | 1 cut(s) | 1635 |
| BsuRI | GGCC | 9 cut(s) | 341, 701, 1115, 1221, 1232, 1396, 1550, 1637, 1671 |
| BtgI | CCRYGG | 4 cut(s) | 33, 408, 500, 1018 |
| BtgZI | GCGATG | 2 cut(s) | 620, 1017 |
| BtrI | CACGTC | 2 cut(s) | 754, 934 |
| BtsCI | GGATG | 2 cut(s) | 1570, 1624 |
| BtsI | GCAGTG | 2 cut(s) | 1416, 1428 |
| BtsIMutI | CAGTG | 5 cut(s) | 747, 1236, 1416, 1428, 1648 |
| CaiI | CAGNNNCTG | 1 cut(s) | 981 |
| CfoI | GCGC | 8 cut(s) | 317, 388, 482, 499, 531, 555, 1340, 1535 |
| Cfr10I | RCCGGY | 3 cut(s) | 517, 1633, 1667 |
| Cfr13I | GGNCC | 8 cut(s) | 60, 310, 370, 474, 633, 699, 1219, 1549 |
| Cfr42I | CCGCGG | 1 cut(s) | 503 |
| Cfr9I | CCCGGG | 1 cut(s) | 1557 |
| CseI | GACGC | 5 cut(s) | 256, 299, 956, 1022, 1516 |
| Csp6I | GTAC | 6 cut(s) | 49, 536, 627, 771, 1267, 1407 |
| CviAII | CATG | 3 cut(s) | 343, 1090, 1445 |
| CviQI | GTAC | 6 cut(s) | 49, 536, 627, 771, 1267, 1407 |
| DdeI | CTNAG | 4 cut(s) | 389, 1119, 1170, 1500 |
| DinI | GGCGCC | 2 cut(s) | 498, 1339 |
| DpnI | GATC | 3 cut(s) | 1107, 1139, 1175 |
| DpnII | GATC | 3 cut(s) | 1105, 1137, 1173 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1584 |
| EaeI | YGGCCR | 4 cut(s) | 1113, 1230, 1394, 1635 |
| EagI | CGGCCG | 1 cut(s) | 1635 |
| Eam1104I | CTCTTC | 2 cut(s) | 141, 675 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1584 |
| EarI | CTCTTC | 2 cut(s) | 141, 675 |
| EciI | GGCGGA | 5 cut(s) | 196, 723, 1277, 1494, 1577 |
| EclXI | CGGCCG | 1 cut(s) | 1635 |
| Eco130I | CCWWGG | 1 cut(s) | 1293 |
| Eco24I | GRGCYC | 2 cut(s) | 395, 1456 |
| Eco31I | GGTCTC | 1 cut(s) | 1571 |
| Eco47I | GGWCC | 5 cut(s) | 60, 310, 370, 474, 633 |
| Eco52I | CGGCCG | 1 cut(s) | 1635 |
| Eco57I | CTGAAG | 3 cut(s) | 623, 898, 1674 |
| Eco88I | CYCGRG | 5 cut(s) | 737, 1052, 1459, 1557, 1596 |
| Eco91I | GGTNACC | 1 cut(s) | 691 |
| EcoO109I | RGGNCCY | 2 cut(s) | 699, 1219 |
| EcoO65I | GGTNACC | 1 cut(s) | 691 |
| EcoRII | CCWGG | 3 cut(s) | 333, 959, 1438 |
| EcoT14I | CCWWGG | 1 cut(s) | 1293 |
| EcoT38I | GRGCYC | 2 cut(s) | 395, 1456 |
| EgeI | GGCGCC | 2 cut(s) | 498, 1339 |
| EheI | GGCGCC | 2 cut(s) | 498, 1339 |
| ErhI | CCWWGG | 1 cut(s) | 1293 |
| FaeI | CATG | 3 cut(s) | 346, 1093, 1448 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1656, 1688 |
| FaqI | GGGAC | 3 cut(s) | 487, 1078, 1572 |
| FatI | CATG | 3 cut(s) | 342, 1089, 1444 |
| FauI | CCCGC | 6 cut(s) | 6, 109, 463, 524, 1095, 1291 |
| FblI | GTMKAC | 1 cut(s) | 890 |
| FokI | GGATG | 2 cut(s) | 1577, 1611 |
| FriOI | GRGCYC | 2 cut(s) | 395, 1456 |
| FspBI | CTAG | 2 cut(s) | 1184, 1307 |
| GlaI | GCGC | 8 cut(s) | 316, 387, 481, 498, 530, 554, 1339, 1534 |
| GsaI | CCCAGC | 3 cut(s) | 673, 860, 1539 |
| GsuI | CTGGAG | 3 cut(s) | 356, 642, 1100 |
| HaeII | RGCGCY | 3 cut(s) | 389, 500, 1341 |
| HaeIII | GGCC | 9 cut(s) | 341, 701, 1115, 1221, 1232, 1396, 1550, 1637, 1671 |
| HapII | CCGG | 7 cut(s) | 216, 354, 518, 696, 1558, 1634, 1668 |
| HgaI | GACGC | 5 cut(s) | 256, 299, 956, 1022, 1516 |
| HhaI | GCGC | 8 cut(s) | 317, 388, 482, 499, 531, 555, 1340, 1535 |
| Hin1I | GRCGYC | 5 cut(s) | 497, 967, 1014, 1338, 1508 |
| Hin1II | CATG | 3 cut(s) | 346, 1093, 1448 |
| Hin6I | GCGC | 8 cut(s) | 315, 386, 480, 497, 529, 553, 1338, 1533 |
| HinP1I | GCGC | 8 cut(s) | 315, 386, 480, 497, 529, 553, 1338, 1533 |
| HincII | GTYRAC | 3 cut(s) | 594, 656, 891 |
| HindII | GTYRAC | 3 cut(s) | 594, 656, 891 |
| HpaII | CCGG | 7 cut(s) | 216, 354, 518, 696, 1558, 1634, 1668 |
| HphI | GGTGA | 6 cut(s) | 458, 685, 833, 833, 1202, 1505 |
| Hpy166II | GTNNAC | 4 cut(s) | 370, 594, 656, 891 |
| Hpy188I | TCNGA | 4 cut(s) | 97, 400, 805, 1606 |
| Hpy188III | TCNNGA | 2 cut(s) | 298, 354 |
| Hpy8I | GTNNAC | 4 cut(s) | 370, 594, 656, 891 |
| Hpy99I | CGWCG | 3 cut(s) | 82, 938, 1363 |
| HpyAV | CCTTC | 9 cut(s) | 31, 499, 538, 647, 668, 922, 1267, 1327, 1649 |
| HpyCH4III | ACNGT | 3 cut(s) | 821, 1240, 1573 |
| HpyCH4IV | ACGT | 5 cut(s) | 80, 753, 933, 1032, 1358 |
| HpyCH4V | TGCA | 3 cut(s) | 27, 1327, 1375 |
| HpyF3I | CTNAG | 4 cut(s) | 389, 1119, 1170, 1500 |
| HpySE526I | ACGT | 5 cut(s) | 80, 753, 933, 1032, 1358 |
| Hsp92I | GRCGYC | 5 cut(s) | 497, 967, 1014, 1338, 1508 |
| Hsp92II | CATG | 3 cut(s) | 346, 1093, 1448 |
| HspAI | GCGC | 8 cut(s) | 315, 386, 480, 497, 529, 553, 1338, 1533 |
| KasI | GGCGCC | 2 cut(s) | 496, 1337 |
| Kpn2I | TCCGGA | 1 cut(s) | 353 |
| KpnI | GGTACC | 1 cut(s) | 539 |
| KroI | GCCGGC | 2 cut(s) | 1633, 1667 |
| KroNI | GCCGGC | 2 cut(s) | 1635, 1669 |
| KspI | CCGCGG | 1 cut(s) | 503 |
| Kzo9I | GATC | 3 cut(s) | 1105, 1137, 1173 |
| LmnI | GCTCC | 9 cut(s) | 73, 223, 409, 586, 736, 748, 1081, 1417, 1451 |
| LweI | GCATC | 4 cut(s) | 174, 994, 1311, 1639 |
| MaeI | CTAG | 2 cut(s) | 1184, 1307 |
| MaeII | ACGT | 5 cut(s) | 80, 753, 933, 1032, 1358 |
| MaeIII | GTNAC | 5 cut(s) | 287, 446, 568, 691, 1493 |
| MalI | GATC | 3 cut(s) | 1107, 1139, 1175 |
| MbiI | CCGCTC | 6 cut(s) | 116, 777, 853, 1045, 1066, 1412 |
| MboI | GATC | 3 cut(s) | 1105, 1137, 1173 |
| MboII | GAAGA | 3 cut(s) | 158, 553, 692 |
| MhlI | GDGCHC | 6 cut(s) | 395, 517, 933, 1059, 1306, 1456 |
| MluCI | AATT | 1 cut(s) | 87 |
| MluI | ACGCGT | 1 cut(s) | 248 |
| Mly113I | GGCGCC | 2 cut(s) | 497, 1338 |
| MlyI | GAGTC | 5 cut(s) | 130, 256, 779, 1160, 1490 |
| MmeI | TCCRAC | 4 cut(s) | 75, 87, 564, 1429 |
| MroI | TCCGGA | 1 cut(s) | 353 |
| MroNI | GCCGGC | 2 cut(s) | 1633, 1667 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 2 cut(s) | 441, 752 |
| MspA1I | CMGCKG | 4 cut(s) | 502, 617, 764, 1504 |
| MspI | CCGG | 7 cut(s) | 216, 354, 518, 696, 1558, 1634, 1668 |
| MspR9I | CCNGG | 7 cut(s) | 217, 335, 697, 961, 1440, 1558, 1559 |
| MvaI | CCWGG | 3 cut(s) | 335, 961, 1440 |
| MvnI | CGCG | 8 cut(s) | 156, 250, 315, 482, 502, 531, 631, 1533 |
| NaeI | GCCGGC | 2 cut(s) | 1635, 1669 |
| NarI | GGCGCC | 2 cut(s) | 497, 1338 |
| NciI | CCSGG | 4 cut(s) | 217, 697, 1558, 1559 |
| NdeII | GATC | 3 cut(s) | 1105, 1137, 1173 |
| NgoMIV | GCCGGC | 2 cut(s) | 1633, 1667 |
| NlaIII | CATG | 3 cut(s) | 346, 1093, 1448 |
| NmeAIII | GCCGAG | 1 cut(s) | 1372 |
| NmuCI | GTSAC | 4 cut(s) | 287, 446, 691, 1493 |
| NspI | RCATGY | 1 cut(s) | 1093 |
| OliI | CACNNNNGTG | 1 cut(s) | 752 |
| PaeR7I | CTCGAG | 1 cut(s) | 1052 |
| PciI | ACATGT | 1 cut(s) | 1089 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 602, 1059 |
| PdiI | GCCGGC | 2 cut(s) | 1635, 1669 |
| PfeI | GAWTC | 5 cut(s) | 184, 662, 905, 1244, 1482 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1347 |
| PfoI | TCCNGGA | 1 cut(s) | 333 |
| PleI | GAGTC | 5 cut(s) | 130, 256, 779, 1159, 1490 |
| PluTI | GGCGCC | 2 cut(s) | 500, 1341 |
| PpsI | GAGTC | 5 cut(s) | 130, 256, 779, 1159, 1490 |
| PscI | ACATGT | 1 cut(s) | 1089 |
| PshAI | GACNNNNGTC | 1 cut(s) | 896 |
| Psp1406I | AACGTT | 1 cut(s) | 1032 |
| Psp6I | CCWGG | 3 cut(s) | 333, 959, 1438 |
| PspEI | GGTNACC | 1 cut(s) | 691 |
| PspFI | CCCAGC | 3 cut(s) | 669, 856, 1535 |
| PspGI | CCWGG | 3 cut(s) | 333, 959, 1438 |
| PspPI | GGNCC | 8 cut(s) | 60, 310, 370, 474, 633, 699, 1219, 1549 |
| PspXI | VCTCGAGB | 1 cut(s) | 1052 |
| PstI | CTGCAG | 1 cut(s) | 1329 |
| PstNI | CAGNNNCTG | 1 cut(s) | 981 |
| RsaI | GTAC | 6 cut(s) | 50, 537, 628, 772, 1268, 1408 |
| RsaNI | GTAC | 6 cut(s) | 49, 536, 627, 771, 1267, 1407 |
| RseI | CAYNNNNRTG | 2 cut(s) | 441, 752 |
| SacII | CCGCGG | 1 cut(s) | 503 |
| SalI | GTCGAC | 1 cut(s) | 889 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| Sau3AI | GATC | 3 cut(s) | 1105, 1137, 1173 |
| Sau96I | GGNCC | 8 cut(s) | 60, 310, 370, 474, 633, 699, 1219, 1549 |
| SchI | GAGTC | 5 cut(s) | 130, 256, 779, 1160, 1490 |
| ScrFI | CCNGG | 7 cut(s) | 217, 335, 697, 961, 1440, 1558, 1559 |
| SduI | GDGCHC | 6 cut(s) | 395, 517, 933, 1059, 1306, 1456 |
| SfaNI | GCATC | 4 cut(s) | 174, 994, 1311, 1639 |
| SfcI | CTRYAG | 2 cut(s) | 759, 1325 |
| SfoI | GGCGCC | 2 cut(s) | 498, 1339 |
| Sfr274I | CTCGAG | 1 cut(s) | 1052 |
| Sfr303I | CCGCGG | 1 cut(s) | 503 |
| SgrBI | CCGCGG | 1 cut(s) | 503 |
| SinI | GGWCC | 5 cut(s) | 60, 310, 370, 474, 633 |
| SlaI | CTCGAG | 1 cut(s) | 1052 |
| SmaI | CCCGGG | 1 cut(s) | 1559 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 441, 752 |
| SmlI | CTYRAG | 1 cut(s) | 1052 |
| SmoI | CTYRAG | 1 cut(s) | 1052 |
| Sse9I | AATT | 1 cut(s) | 87 |
| SspDI | GGCGCC | 2 cut(s) | 496, 1337 |
| SspMI | CTAG | 2 cut(s) | 1184, 1307 |
| StyD4I | CCNGG | 7 cut(s) | 215, 333, 695, 959, 1438, 1556, 1557 |
| StyI | CCWWGG | 1 cut(s) | 1293 |
| TaaI | ACNGT | 3 cut(s) | 821, 1240, 1573 |
| TaiI | ACGT | 5 cut(s) | 83, 756, 936, 1035, 1361 |
| TaqI | TCGA | 5 cut(s) | 112, 890, 1053, 1344, 1361 |
| TaqII | GACCGA | 2 cut(s) | 876, 1357 |
| TasI | AATT | 1 cut(s) | 87 |
| TatI | WGTACW | 1 cut(s) | 1266 |
| TfiI | GAWTC | 5 cut(s) | 184, 662, 905, 1244, 1482 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 5 cut(s) | 754, 1243, 1423, 1435, 1648 |
| TseFI | GTSAC | 4 cut(s) | 287, 446, 691, 1493 |
| Tsp45I | GTSAC | 4 cut(s) | 287, 446, 691, 1493 |
| TspDTI | ATGAA | 1 cut(s) | 938 |
| TspGWI | ACGGA | 2 cut(s) | 575, 886 |
| TspMI | CCCGGG | 1 cut(s) | 1557 |
| TspRI | CASTG | 5 cut(s) | 754, 1243, 1423, 1435, 1648 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1347 |
| VpaK11BI | GGWCC | 5 cut(s) | 60, 310, 370, 474, 633 |
| XceI | RCATGY | 1 cut(s) | 1093 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 580, 666 |
| XhoI | CTCGAG | 1 cut(s) | 1052 |
| XmaI | CCCGGG | 1 cut(s) | 1557 |
| XmiI | GTMKAC | 1 cut(s) | 890 |
| XspI | CTAG | 2 cut(s) | 1184, 1307 |