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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 441 |
| Acc65I | GGTACC | 1 cut(s) | 432 |
| AccB1I | GGYRCC | 1 cut(s) | 432 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 303 |
| AccBSI | CCGCTC | 2 cut(s) | 94, 426 |
| AccII | CGCG | 2 cut(s) | 57, 356 |
| AclWI | GGATC | 1 cut(s) | 150 |
| AcyI | GRCGYC | 1 cut(s) | 314 |
| AfaI | GTAC | 2 cut(s) | 224, 434 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 81, 303, 359, 377, 463, 510 |
| AgsI | TTSAA | 1 cut(s) | 208 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 481 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 89, 121 |
| AluBI | AGCT | 4 cut(s) | 64, 115, 148, 554 |
| AluI | AGCT | 4 cut(s) | 64, 115, 148, 554 |
| Alw26I | GTCTC | 1 cut(s) | 395 |
| AlwI | GGATC | 1 cut(s) | 150 |
| AoxI | GGCC | 4 cut(s) | 186, 258, 292, 329 |
| ApaI | GGGCCC | 1 cut(s) | 296 |
| ApeKI | GCWGC | 3 cut(s) | 44, 136, 245 |
| Asp718I | GGTACC | 1 cut(s) | 432 |
| AspS9I | GGNCC | 5 cut(s) | 258, 292, 293, 329, 466 |
| AsuC2I | CCSGG | 1 cut(s) | 82 |
| AvaII | GGWCC | 1 cut(s) | 466 |
| BaeGI | GKGCMC | 1 cut(s) | 296 |
| BanI | GGYRCC | 1 cut(s) | 432 |
| BanII | GRGCYC | 2 cut(s) | 296, 453 |
| BauI | CACGAG | 1 cut(s) | 460 |
| BbvI | GCAGC | 3 cut(s) | 56, 123, 257 |
| BccI | CCATC | 2 cut(s) | 305, 423 |
| BceAI | ACGGC | 4 cut(s) | 59, 179, 245, 316 |
| BcnI | CCSGG | 1 cut(s) | 82 |
| BcoDI | GTCTC | 1 cut(s) | 395 |
| BfaI | CTAG | 2 cut(s) | 116, 557 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 200 |
| BisI | GCNGC | 8 cut(s) | 45, 137, 189, 192, 246, 412, 504, 523 |
| BlsI | GCNGC | 8 cut(s) | 46, 138, 190, 193, 247, 413, 505, 524 |
| Bme1390I | CCNGG | 1 cut(s) | 82 |
| Bme18I | GGWCC | 1 cut(s) | 466 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 481 |
| BmgT120I | GGNCC | 5 cut(s) | 258, 292, 293, 329, 466 |
| BmiI | GGNNCC | 6 cut(s) | 259, 294, 295, 369, 434, 467 |
| BmrFI | CCNGG | 1 cut(s) | 82 |
| BmrI | ACTGGG | 2 cut(s) | 313, 313 |
| BmsI | GCATC | 2 cut(s) | 40, 161 |
| BmuI | ACTGGG | 2 cut(s) | 313, 313 |
| Bpu10I | CCTNAGC | 1 cut(s) | 422 |
| BpuMI | CCSGG | 1 cut(s) | 82 |
| BsaHI | GRCGYC | 1 cut(s) | 314 |
| BsaI | GGTCTC | 1 cut(s) | 395 |
| BsaJI | CCNNGG | 3 cut(s) | 81, 195, 385 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 81, 303, 359, 377, 463, 510 |
| Bse1I | ACTGG | 2 cut(s) | 308, 319 |
| Bse3DI | GCAATG | 1 cut(s) | 240 |
| BseDI | CCNNGG | 3 cut(s) | 81, 195, 385 |
| BseGI | GGATG | 2 cut(s) | 55, 434 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 81, 303, 359, 377, 463, 510 |
| BseMI | GCAATG | 1 cut(s) | 240 |
| BseMII | CTCAG | 1 cut(s) | 413 |
| BseNI | ACTGG | 2 cut(s) | 308, 319 |
| BseSI | GKGCMC | 1 cut(s) | 296 |
| BseXI | GCAGC | 3 cut(s) | 56, 123, 257 |
| BseYI | CCCAGC | 1 cut(s) | 326 |
| Bsh1236I | CGCG | 2 cut(s) | 57, 356 |
| BshFI | GGCC | 4 cut(s) | 188, 260, 294, 331 |
| BshNI | GGYRCC | 1 cut(s) | 432 |
| BsiSI | CCGG | 1 cut(s) | 81 |
| BslFI | GGGAC | 2 cut(s) | 98, 301 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 81, 303, 359, 377, 463, 510 |
| BsmAI | GTCTC | 1 cut(s) | 395 |
| BsmFI | GGGAC | 2 cut(s) | 98, 301 |
| BsnI | GGCC | 4 cut(s) | 188, 260, 294, 331 |
| Bso31I | GGTCTC | 1 cut(s) | 395 |
| Bsp120I | GGGCCC | 1 cut(s) | 292 |
| Bsp1286I | GDGCHC | 2 cut(s) | 296, 453 |
| Bsp143I | GATC | 2 cut(s) | 142, 470 |
| BspANI | GGCC | 4 cut(s) | 188, 260, 294, 331 |
| BspCNI | CTCAG | 1 cut(s) | 414 |
| BspFNI | CGCG | 2 cut(s) | 57, 356 |
| BspLI | GGNNCC | 6 cut(s) | 259, 294, 295, 369, 434, 467 |
| BspPI | GGATC | 1 cut(s) | 150 |
| BspT107I | GGYRCC | 1 cut(s) | 432 |
| BspTNI | GGTCTC | 1 cut(s) | 395 |
| BsrBI | CCGCTC | 2 cut(s) | 94, 426 |
| BsrDI | GCAATG | 1 cut(s) | 240 |
| BsrI | ACTGG | 2 cut(s) | 308, 319 |
| BssECI | CCNNGG | 3 cut(s) | 81, 195, 385 |
| BssMI | GATC | 2 cut(s) | 142, 470 |
| BssNI | GRCGYC | 1 cut(s) | 314 |
| BssSI | CACGAG | 1 cut(s) | 460 |
| BssT1I | CCWWGG | 1 cut(s) | 385 |
| Bst2BI | CACGAG | 1 cut(s) | 460 |
| Bst4CI | ACNGT | 1 cut(s) | 21 |
| BstACI | GRCGYC | 1 cut(s) | 314 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 50 |
| BstC8I | GCNNGC | 3 cut(s) | 55, 150, 354 |
| BstDEI | CTNAG | 1 cut(s) | 422 |
| BstDSI | CCRYGG | 1 cut(s) | 195 |
| BstF5I | GGATG | 2 cut(s) | 55, 434 |
| BstFNI | CGCG | 2 cut(s) | 57, 356 |
| BstKTI | GATC | 2 cut(s) | 145, 473 |
| BstMAI | GTCTC | 1 cut(s) | 395 |
| BstMBI | GATC | 2 cut(s) | 142, 470 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 50, 145, 200, 353, 500, 528 |
| BstSCI | CCNGG | 1 cut(s) | 80 |
| BstSLI | GKGCMC | 1 cut(s) | 296 |
| BstUI | CGCG | 2 cut(s) | 57, 356 |
| BstV1I | GCAGC | 3 cut(s) | 56, 123, 257 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 326 |
| BsuRI | GGCC | 4 cut(s) | 188, 260, 294, 331 |
| BtgI | CCRYGG | 1 cut(s) | 195 |
| BtsCI | GGATG | 2 cut(s) | 55, 434 |
| Cac8I | GCNNGC | 3 cut(s) | 55, 150, 354 |
| Cfr13I | GGNCC | 5 cut(s) | 258, 292, 293, 329, 466 |
| CseI | GACGC | 2 cut(s) | 50, 303 |
| Csp6I | GTAC | 2 cut(s) | 223, 433 |
| CviAII | CATG | 1 cut(s) | 127 |
| CviQI | GTAC | 2 cut(s) | 223, 433 |
| DdeI | CTNAG | 1 cut(s) | 422 |
| DpnI | GATC | 2 cut(s) | 144, 472 |
| DpnII | GATC | 2 cut(s) | 142, 470 |
| DriI | GACNNNNNGTC | 1 cut(s) | 481 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 481 |
| EciI | GGCGGA | 2 cut(s) | 20, 233 |
| Eco130I | CCWWGG | 1 cut(s) | 385 |
| Eco24I | GRGCYC | 2 cut(s) | 296, 453 |
| Eco31I | GGTCTC | 1 cut(s) | 395 |
| Eco47I | GGWCC | 1 cut(s) | 466 |
| EcoO109I | RGGNCCY | 2 cut(s) | 292, 293 |
| EcoT14I | CCWWGG | 1 cut(s) | 385 |
| EcoT38I | GRGCYC | 2 cut(s) | 296, 453 |
| ErhI | CCWWGG | 1 cut(s) | 385 |
| FaeI | CATG | 1 cut(s) | 130 |
| FaiI | YATR | 3 cut(s) | 128, 441, 545 |
| FaqI | GGGAC | 2 cut(s) | 98, 301 |
| FatI | CATG | 1 cut(s) | 126 |
| FauI | CCCGC | 2 cut(s) | 132, 361 |
| Fnu4HI | GCNGC | 8 cut(s) | 45, 137, 189, 192, 246, 412, 504, 523 |
| FokI | GGATG | 2 cut(s) | 62, 441 |
| FriOI | GRGCYC | 2 cut(s) | 296, 453 |
| Fsp4HI | GCNGC | 8 cut(s) | 45, 137, 189, 192, 246, 412, 504, 523 |
| FspBI | CTAG | 2 cut(s) | 116, 557 |
| GluI | GCNGC | 8 cut(s) | 45, 137, 189, 192, 246, 412, 504, 523 |
| GsaI | CCCAGC | 1 cut(s) | 330 |
| HaeIII | GGCC | 4 cut(s) | 188, 260, 294, 331 |
| HapII | CCGG | 1 cut(s) | 81 |
| HgaI | GACGC | 2 cut(s) | 50, 303 |
| Hin1I | GRCGYC | 1 cut(s) | 314 |
| Hin1II | CATG | 1 cut(s) | 130 |
| HincII | GTYRAC | 1 cut(s) | 24 |
| HindII | GTYRAC | 1 cut(s) | 24 |
| HpaII | CCGG | 1 cut(s) | 81 |
| Hpy166II | GTNNAC | 1 cut(s) | 24 |
| Hpy188I | TCNGA | 4 cut(s) | 342, 470, 475, 563 |
| Hpy188III | TCNNGA | 1 cut(s) | 208 |
| Hpy8I | GTNNAC | 1 cut(s) | 24 |
| Hpy99I | CGWCG | 1 cut(s) | 266 |
| HpyAV | CCTTC | 2 cut(s) | 223, 352 |
| HpyCH4III | ACNGT | 1 cut(s) | 21 |
| HpyCH4IV | ACGT | 1 cut(s) | 270 |
| HpyCH4V | TGCA | 1 cut(s) | 13 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 50, 145, 200, 353, 500, 528 |
| HpyF3I | CTNAG | 1 cut(s) | 422 |
| HpySE526I | ACGT | 1 cut(s) | 270 |
| Hsp92I | GRCGYC | 1 cut(s) | 314 |
| Hsp92II | CATG | 1 cut(s) | 130 |
| KpnI | GGTACC | 1 cut(s) | 436 |
| Kzo9I | GATC | 2 cut(s) | 142, 470 |
| LmnI | GCTCC | 1 cut(s) | 174 |
| Lsp1109I | GCAGC | 3 cut(s) | 56, 123, 257 |
| LweI | GCATC | 2 cut(s) | 40, 161 |
| MaeI | CTAG | 2 cut(s) | 116, 557 |
| MaeII | ACGT | 1 cut(s) | 270 |
| MaeIII | GTNAC | 1 cut(s) | 38 |
| MalI | GATC | 2 cut(s) | 144, 472 |
| MbiI | CCGCTC | 2 cut(s) | 94, 426 |
| MboI | GATC | 2 cut(s) | 142, 470 |
| MboII | GAAGA | 1 cut(s) | 559 |
| MhlI | GDGCHC | 2 cut(s) | 296, 453 |
| MnlI | CCTC | 4 cut(s) | 178, 193, 235, 503 |
| MspA1I | CMGCKG | 4 cut(s) | 47, 148, 326, 525 |
| MspI | CCGG | 1 cut(s) | 81 |
| MspR9I | CCNGG | 1 cut(s) | 82 |
| MvnI | CGCG | 2 cut(s) | 57, 356 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 50, 145, 200, 353, 500, 528 |
| NciI | CCSGG | 1 cut(s) | 82 |
| NdeII | GATC | 2 cut(s) | 142, 470 |
| NlaIII | CATG | 1 cut(s) | 130 |
| NlaIV | GGNNCC | 6 cut(s) | 259, 294, 295, 369, 434, 467 |
| NmeAIII | GCCGAG | 1 cut(s) | 472 |
| NmuCI | GTSAC | 1 cut(s) | 38 |
| PflFI | GACNNNGTC | 1 cut(s) | 305 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 303 |
| PkrI | GCNGC | 8 cut(s) | 46, 138, 190, 193, 247, 413, 505, 524 |
| PsiI | TTATAA | 1 cut(s) | 441 |
| PspFI | CCCAGC | 1 cut(s) | 326 |
| PspN4I | GGNNCC | 6 cut(s) | 259, 294, 295, 369, 434, 467 |
| PspOMI | GGGCCC | 1 cut(s) | 292 |
| PspPI | GGNCC | 5 cut(s) | 258, 292, 293, 329, 466 |
| PsyI | GACNNNGTC | 1 cut(s) | 305 |
| PvuII | CAGCTG | 1 cut(s) | 148 |
| RsaI | GTAC | 2 cut(s) | 224, 434 |
| RsaNI | GTAC | 2 cut(s) | 223, 433 |
| SatI | GCNGC | 8 cut(s) | 45, 137, 189, 192, 246, 412, 504, 523 |
| Sau3AI | GATC | 2 cut(s) | 142, 470 |
| Sau96I | GGNCC | 5 cut(s) | 258, 292, 293, 329, 466 |
| ScrFI | CCNGG | 1 cut(s) | 82 |
| SduI | GDGCHC | 2 cut(s) | 296, 453 |
| SfaNI | GCATC | 2 cut(s) | 40, 161 |
| SinI | GGWCC | 1 cut(s) | 466 |
| SspMI | CTAG | 2 cut(s) | 116, 557 |
| StyD4I | CCNGG | 1 cut(s) | 80 |
| StyI | CCWWGG | 1 cut(s) | 385 |
| TaaI | ACNGT | 1 cut(s) | 21 |
| TaiI | ACGT | 1 cut(s) | 273 |
| TaqI | TCGA | 1 cut(s) | 300 |
| TatI | WGTACW | 1 cut(s) | 222 |
| TauI | GCSGC | 5 cut(s) | 191, 194, 414, 506, 525 |
| TseFI | GTSAC | 1 cut(s) | 38 |
| TseI | GCWGC | 3 cut(s) | 44, 136, 245 |
| Tsp45I | GTSAC | 1 cut(s) | 38 |
| TspDTI | ATGAA | 1 cut(s) | 560 |
| Tth111I | GACNNNGTC | 1 cut(s) | 305 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 303 |
| VpaK11BI | GGWCC | 1 cut(s) | 466 |
| XspI | CTAG | 2 cut(s) | 116, 557 |