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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 344 |
| Acc36I | ACCTGC | 2 cut(s) | 344, 1116 |
| Acc65I | GGTACC | 1 cut(s) | 321 |
| AccB1I | GGYRCC | 4 cut(s) | 321, 335, 523, 690 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 588 |
| AccBSI | CCGCTC | 1 cut(s) | 1489 |
| AccI | GTMKAC | 3 cut(s) | 345, 1104, 1139 |
| AccII | CGCG | 7 cut(s) | 62, 187, 237, 1009, 1011, 1026, 1233 |
| AclWI | GGATC | 3 cut(s) | 1043, 1263, 1458 |
| AcoI | YGGCCR | 2 cut(s) | 603, 1470 |
| AcsI | RAATTY | 2 cut(s) | 551, 1060 |
| AcuI | CTGAAG | 1 cut(s) | 131 |
| AcvI | CACGTG | 1 cut(s) | 925 |
| AcyI | GRCGYC | 1 cut(s) | 691 |
| AdeI | CACNNNGTG | 1 cut(s) | 917 |
| AfaI | GTAC | 6 cut(s) | 294, 323, 818, 910, 998, 1156 |
| AfeI | AGCGCT | 1 cut(s) | 245 |
| AflIII | ACRYGT | 1 cut(s) | 48 |
| AgsI | TTSAA | 3 cut(s) | 58, 134, 1168 |
| AjiI | CACGTC | 1 cut(s) | 49 |
| AjnI | CCWGG | 1 cut(s) | 158 |
| AleI | CACNNNNGTG | 1 cut(s) | 1398 |
| AluBI | AGCT | 5 cut(s) | 170, 198, 230, 424, 745 |
| AluI | AGCT | 5 cut(s) | 170, 198, 230, 424, 745 |
| Alw21I | GWGCWC | 1 cut(s) | 200 |
| Alw26I | GTCTC | 2 cut(s) | 1328, 1395 |
| AlwI | GGATC | 3 cut(s) | 1043, 1263, 1458 |
| Aor51HI | AGCGCT | 1 cut(s) | 245 |
| ApeKI | GCWGC | 6 cut(s) | 263, 424, 476, 699, 983, 1466 |
| ApoI | RAATTY | 2 cut(s) | 551, 1060 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1495, 1527 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 660 |
| Asp718I | GGTACC | 1 cut(s) | 321 |
| AspLEI | GCGC | 7 cut(s) | 237, 246, 429, 693, 739, 1011, 1345 |
| AspS9I | GGNCC | 7 cut(s) | 298, 641, 842, 1309, 1445, 1475, 1511 |
| AsuC2I | CCSGG | 7 cut(s) | 40, 297, 631, 1215, 1331, 1448, 1474 |
| AsuHPI | GGTGA | 7 cut(s) | 221, 430, 1142, 1336, 1381, 1385, 1412 |
| AsuNHI | GCTAGC | 1 cut(s) | 266 |
| AvaII | GGWCC | 2 cut(s) | 641, 1511 |
| BaeGI | GKGCMC | 1 cut(s) | 922 |
| BalI | TGGCCA | 1 cut(s) | 605 |
| BanI | GGYRCC | 4 cut(s) | 321, 335, 523, 690 |
| BanII | GRGCYC | 2 cut(s) | 200, 416 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 276, 308 |
| BauI | CACGAG | 1 cut(s) | 485 |
| BbrPI | CACGTG | 1 cut(s) | 925 |
| Bbv12I | GWGCWC | 1 cut(s) | 200 |
| BbvI | GCAGC | 6 cut(s) | 250, 411, 463, 686, 995, 1453 |
| BccI | CCATC | 4 cut(s) | 161, 358, 1175, 1246 |
| BceAI | ACGGC | 6 cut(s) | 326, 349, 362, 464, 929, 966 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 325, 359 |
| BciT130I | CCWGG | 1 cut(s) | 160 |
| BcnI | CCSGG | 7 cut(s) | 40, 297, 631, 1215, 1331, 1448, 1474 |
| BcoDI | GTCTC | 2 cut(s) | 1328, 1395 |
| BfaI | CTAG | 3 cut(s) | 201, 231, 267 |
| BfmI | CTRYAG | 1 cut(s) | 105 |
| BfoI | RGCGCY | 4 cut(s) | 247, 694, 740, 1346 |
| BfuAI | ACCTGC | 2 cut(s) | 344, 1116 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 314 |
| BlpI | GCTNAGC | 1 cut(s) | 1346 |
| Bme1390I | CCNGG | 8 cut(s) | 40, 160, 297, 631, 1215, 1331, 1448, 1474 |
| Bme18I | GGWCC | 2 cut(s) | 641, 1511 |
| BmgBI | CACGTC | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 7 cut(s) | 298, 641, 842, 1309, 1445, 1475, 1511 |
| BmiI | GGNNCC | 9 cut(s) | 112, 274, 323, 337, 525, 642, 692, 1055, 1512 |
| BmrFI | CCNGG | 8 cut(s) | 40, 160, 297, 631, 1215, 1331, 1448, 1474 |
| BmsI | GCATC | 5 cut(s) | 358, 447, 1362, 1368, 1482 |
| BmtI | GCTAGC | 1 cut(s) | 270 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 437, 469, 498, 530 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1346 |
| BpuEI | CTTGAG | 1 cut(s) | 739 |
| BpuMI | CCSGG | 7 cut(s) | 40, 297, 631, 1215, 1331, 1448, 1474 |
| BsaAI | YACGTR | 1 cut(s) | 925 |
| BsaHI | GRCGYC | 1 cut(s) | 691 |
| BsaJI | CCNNGG | 8 cut(s) | 158, 159, 502, 648, 694, 1296, 1320, 1396 |
| BsaWI | WCCGGW | 4 cut(s) | 384, 402, 892, 1363 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1274, 1304 |
| Bse118I | RCCGGY | 2 cut(s) | 726, 1531 |
| Bse1I | ACTGG | 5 cut(s) | 782, 1090, 1227, 1351, 1387 |
| BseBI | CCWGG | 1 cut(s) | 160 |
| BseDI | CCNNGG | 8 cut(s) | 158, 159, 502, 648, 694, 1296, 1320, 1396 |
| BseGI | GGATG | 8 cut(s) | 153, 369, 373, 393, 448, 476, 1497, 1546 |
| BseMII | CTCAG | 4 cut(s) | 342, 477, 855, 1448 |
| BseNI | ACTGG | 5 cut(s) | 782, 1090, 1227, 1351, 1387 |
| BseRI | GAGGAG | 1 cut(s) | 1148 |
| BseSI | GKGCMC | 1 cut(s) | 922 |
| BseX3I | CGGCCG | 1 cut(s) | 1470 |
| BseXI | GCAGC | 6 cut(s) | 250, 411, 463, 686, 995, 1453 |
| BseYI | CCCAGC | 1 cut(s) | 1311 |
| BsgI | GTGCAG | 2 cut(s) | 1002, 1442 |
| Bsh1236I | CGCG | 7 cut(s) | 62, 187, 237, 1009, 1011, 1026, 1233 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1473 |
| BshNI | GGYRCC | 4 cut(s) | 321, 335, 523, 690 |
| BsiEI | CGRYCG | 1 cut(s) | 1473 |
| BsiHKAI | GWGCWC | 1 cut(s) | 200 |
| BslFI | GGGAC | 4 cut(s) | 776, 799, 1002, 1444 |
| BsmAI | GTCTC | 2 cut(s) | 1328, 1395 |
| BsmFI | GGGAC | 4 cut(s) | 776, 799, 1002, 1444 |
| Bsp1286I | GDGCHC | 3 cut(s) | 200, 416, 922 |
| Bsp143I | GATC | 5 cut(s) | 747, 827, 1035, 1255, 1450 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1346 |
| Bsp68I | TCGCGA | 1 cut(s) | 1233 |
| BspCNI | CTCAG | 4 cut(s) | 341, 476, 856, 1447 |
| BspFNI | CGCG | 7 cut(s) | 62, 187, 237, 1009, 1011, 1026, 1233 |
| BspLI | GGNNCC | 9 cut(s) | 112, 274, 323, 337, 525, 642, 692, 1055, 1512 |
| BspMAI | CTGCAG | 1 cut(s) | 109 |
| BspMI | ACCTGC | 2 cut(s) | 344, 1116 |
| BspOI | GCTAGC | 1 cut(s) | 270 |
| BspPI | GGATC | 3 cut(s) | 1043, 1263, 1458 |
| BspT107I | GGYRCC | 4 cut(s) | 321, 335, 523, 690 |
| BsrBI | CCGCTC | 1 cut(s) | 1489 |
| BsrFI | RCCGGY | 2 cut(s) | 726, 1531 |
| BsrI | ACTGG | 5 cut(s) | 782, 1090, 1227, 1351, 1387 |
| BssAI | RCCGGY | 2 cut(s) | 726, 1531 |
| BssECI | CCNNGG | 8 cut(s) | 158, 159, 502, 648, 694, 1296, 1320, 1396 |
| BssMI | GATC | 5 cut(s) | 747, 827, 1035, 1255, 1450 |
| BssNI | GRCGYC | 1 cut(s) | 691 |
| BssSI | CACGAG | 1 cut(s) | 485 |
| BssT1I | CCWWGG | 2 cut(s) | 502, 1396 |
| Bst2BI | CACGAG | 1 cut(s) | 485 |
| Bst2UI | CCWGG | 1 cut(s) | 160 |
| Bst4CI | ACNGT | 6 cut(s) | 649, 809, 908, 1321, 1420, 1441 |
| Bst6I | CTCTTC | 1 cut(s) | 1011 |
| BstACI | GRCGYC | 1 cut(s) | 691 |
| BstBAI | YACGTR | 1 cut(s) | 925 |
| BstDEI | CTNAG | 6 cut(s) | 328, 463, 758, 864, 1346, 1434 |
| BstDSI | CCRYGG | 2 cut(s) | 648, 1320 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 879, 1400 |
| BstF5I | GGATG | 8 cut(s) | 153, 369, 373, 393, 448, 476, 1497, 1546 |
| BstFNI | CGCG | 7 cut(s) | 62, 187, 237, 1009, 1011, 1026, 1233 |
| BstH2I | RGCGCY | 4 cut(s) | 247, 694, 740, 1346 |
| BstHHI | GCGC | 7 cut(s) | 237, 246, 429, 693, 739, 1011, 1345 |
| BstKTI | GATC | 5 cut(s) | 750, 830, 1038, 1258, 1453 |
| BstMAI | GTCTC | 2 cut(s) | 1328, 1395 |
| BstMBI | GATC | 5 cut(s) | 747, 827, 1035, 1255, 1450 |
| BstMCI | CGRYCG | 1 cut(s) | 1473 |
| BstNI | CCWGG | 1 cut(s) | 160 |
| BstSCI | CCNGG | 8 cut(s) | 38, 158, 295, 629, 1213, 1329, 1446, 1472 |
| BstSFI | CTRYAG | 1 cut(s) | 105 |
| BstSLI | GKGCMC | 1 cut(s) | 922 |
| BstUI | CGCG | 7 cut(s) | 62, 187, 237, 1009, 1011, 1026, 1233 |
| BstV1I | GCAGC | 6 cut(s) | 250, 411, 463, 686, 995, 1453 |
| BstZI | CGGCCG | 1 cut(s) | 1470 |
| BtgI | CCRYGG | 2 cut(s) | 648, 1320 |
| BtgZI | GCGATG | 1 cut(s) | 1265 |
| BtrI | CACGTC | 1 cut(s) | 49 |
| BtsCI | GGATG | 8 cut(s) | 153, 369, 373, 393, 448, 476, 1497, 1546 |
| BtsI | GCAGTG | 2 cut(s) | 34, 116 |
| BtsIMutI | CAGTG | 2 cut(s) | 34, 116 |
| BtuMI | TCGCGA | 1 cut(s) | 1233 |
| BveI | ACCTGC | 2 cut(s) | 344, 1116 |
| CfoI | GCGC | 7 cut(s) | 237, 246, 429, 693, 739, 1011, 1345 |
| Cfr10I | RCCGGY | 2 cut(s) | 726, 1531 |
| Cfr13I | GGNCC | 7 cut(s) | 298, 641, 842, 1309, 1445, 1475, 1511 |
| CseI | GACGC | 3 cut(s) | 80, 176, 1244 |
| Csp6I | GTAC | 6 cut(s) | 293, 322, 817, 909, 997, 1155 |
| CviAII | CATG | 2 cut(s) | 607, 1288 |
| CviQI | GTAC | 6 cut(s) | 293, 322, 817, 909, 997, 1155 |
| DdeI | CTNAG | 6 cut(s) | 328, 463, 758, 864, 1346, 1434 |
| DinI | GGCGCC | 1 cut(s) | 692 |
| DpnI | GATC | 5 cut(s) | 749, 829, 1037, 1257, 1452 |
| DpnII | GATC | 5 cut(s) | 747, 827, 1035, 1255, 1450 |
| DraIII | CACNNNGTG | 1 cut(s) | 917 |
| EaeI | YGGCCR | 2 cut(s) | 603, 1470 |
| EagI | CGGCCG | 1 cut(s) | 1470 |
| Eam1104I | CTCTTC | 1 cut(s) | 1011 |
| EarI | CTCTTC | 1 cut(s) | 1011 |
| EciI | GGCGGA | 8 cut(s) | 80, 488, 668, 1064, 1066, 1200, 1277, 1550 |
| Ecl136II | GAGCTC | 1 cut(s) | 198 |
| EclXI | CGGCCG | 1 cut(s) | 1470 |
| Eco130I | CCWWGG | 2 cut(s) | 502, 1396 |
| Eco147I | AGGCCT | 1 cut(s) | 452 |
| Eco24I | GRGCYC | 2 cut(s) | 200, 416 |
| Eco47I | GGWCC | 2 cut(s) | 641, 1511 |
| Eco47III | AGCGCT | 1 cut(s) | 245 |
| Eco52I | CGGCCG | 1 cut(s) | 1470 |
| Eco53kI | GAGCTC | 1 cut(s) | 198 |
| Eco57I | CTGAAG | 1 cut(s) | 131 |
| Eco72I | CACGTG | 1 cut(s) | 925 |
| EcoICRI | GAGCTC | 1 cut(s) | 198 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 879, 1400 |
| EcoO109I | RGGNCCY | 2 cut(s) | 641, 1511 |
| EcoRII | CCWGG | 1 cut(s) | 158 |
| EcoT14I | CCWWGG | 2 cut(s) | 502, 1396 |
| EcoT38I | GRGCYC | 2 cut(s) | 200, 416 |
| EgeI | GGCGCC | 1 cut(s) | 692 |
| EheI | GGCGCC | 1 cut(s) | 692 |
| ErhI | CCWWGG | 2 cut(s) | 502, 1396 |
| FaeI | CATG | 2 cut(s) | 610, 1291 |
| FaiI | YATR | 9 cut(s) | 14, 71, 173, 587, 608, 672, 684, 1289, 1293 |
| FaqI | GGGAC | 4 cut(s) | 776, 799, 1002, 1444 |
| FatI | CATG | 2 cut(s) | 606, 1287 |
| FauI | CCCGC | 7 cut(s) | 199, 438, 460, 774, 979, 1420, 1500 |
| FblI | GTMKAC | 3 cut(s) | 345, 1104, 1139 |
| FokI | GGATG | 8 cut(s) | 140, 376, 380, 400, 455, 483, 1504, 1553 |
| FriOI | GRGCYC | 2 cut(s) | 200, 416 |
| FspBI | CTAG | 3 cut(s) | 201, 231, 267 |
| GlaI | GCGC | 7 cut(s) | 236, 245, 428, 692, 738, 1010, 1344 |
| GsaI | CCCAGC | 1 cut(s) | 1315 |
| HaeII | RGCGCY | 4 cut(s) | 247, 694, 740, 1346 |
| HgaI | GACGC | 3 cut(s) | 80, 176, 1244 |
| HhaI | GCGC | 7 cut(s) | 237, 246, 429, 693, 739, 1011, 1345 |
| Hin1I | GRCGYC | 1 cut(s) | 691 |
| Hin1II | CATG | 2 cut(s) | 610, 1291 |
| Hin6I | GCGC | 7 cut(s) | 235, 244, 427, 691, 737, 1009, 1343 |
| HinP1I | GCGC | 7 cut(s) | 235, 244, 427, 691, 737, 1009, 1343 |
| HincII | GTYRAC | 4 cut(s) | 346, 382, 904, 1105 |
| HindII | GTYRAC | 4 cut(s) | 346, 382, 904, 1105 |
| HinfI | GANTC | 8 cut(s) | 35, 83, 311, 529, 754, 764, 1136, 1432 |
| HpaI | GTTAAC | 1 cut(s) | 382 |
| HphI | GGTGA | 7 cut(s) | 221, 430, 1142, 1336, 1381, 1385, 1412 |
| Hpy188I | TCNGA | 8 cut(s) | 46, 150, 331, 573, 865, 1357, 1437, 1455 |
| Hpy188III | TCNNGA | 4 cut(s) | 191, 485, 751, 1232 |
| Hpy99I | CGWCG | 6 cut(s) | 242, 347, 350, 809, 1238, 1445 |
| HpyAV | CCTTC | 5 cut(s) | 278, 442, 833, 1240, 1477 |
| HpyCH4III | ACNGT | 6 cut(s) | 649, 809, 908, 1321, 1420, 1441 |
| HpyCH4IV | ACGT | 5 cut(s) | 9, 48, 398, 860, 924 |
| HpyCH4V | TGCA | 7 cut(s) | 107, 535, 702, 932, 983, 1423, 1528 |
| HpyF3I | CTNAG | 6 cut(s) | 328, 463, 758, 864, 1346, 1434 |
| HpySE526I | ACGT | 5 cut(s) | 9, 48, 398, 860, 924 |
| Hsp92I | GRCGYC | 1 cut(s) | 691 |
| Hsp92II | CATG | 2 cut(s) | 610, 1291 |
| HspAI | GCGC | 7 cut(s) | 235, 244, 427, 691, 737, 1009, 1343 |
| KasI | GGCGCC | 1 cut(s) | 690 |
| KpnI | GGTACC | 1 cut(s) | 325 |
| KroI | GCCGGC | 1 cut(s) | 726 |
| KroNI | GCCGGC | 1 cut(s) | 728 |
| KspAI | GTTAAC | 1 cut(s) | 382 |
| Kzo9I | GATC | 5 cut(s) | 747, 827, 1035, 1255, 1450 |
| LmnI | GCTCC | 4 cut(s) | 278, 734, 1127, 1486 |
| Lsp1109I | GCAGC | 6 cut(s) | 250, 411, 463, 686, 995, 1453 |
| LweI | GCATC | 5 cut(s) | 358, 447, 1362, 1368, 1482 |
| MaeI | CTAG | 3 cut(s) | 201, 231, 267 |
| MaeII | ACGT | 5 cut(s) | 9, 48, 398, 860, 924 |
| MaeIII | GTNAC | 2 cut(s) | 508, 1549 |
| MalI | GATC | 5 cut(s) | 749, 829, 1037, 1257, 1452 |
| MbiI | CCGCTC | 1 cut(s) | 1489 |
| MboI | GATC | 5 cut(s) | 747, 827, 1035, 1255, 1450 |
| MboII | GAAGA | 2 cut(s) | 1025, 1028 |
| MhlI | GDGCHC | 3 cut(s) | 200, 416, 922 |
| MlsI | TGGCCA | 1 cut(s) | 605 |
| MluCI | AATT | 4 cut(s) | 551, 1060, 1168, 1273 |
| MluNI | TGGCCA | 1 cut(s) | 605 |
| Mly113I | GGCGCC | 1 cut(s) | 691 |
| MlyI | GAGTC | 3 cut(s) | 758, 1145, 1426 |
| MmeI | TCCRAC | 1 cut(s) | 895 |
| Mox20I | TGGCCA | 1 cut(s) | 605 |
| MroNI | GCCGGC | 1 cut(s) | 726 |
| MroXI | GAANNNNTTC | 1 cut(s) | 660 |
| MscI | TGGCCA | 1 cut(s) | 605 |
| MseI | TTAA | 1 cut(s) | 381 |
| MslI | CAYNNNNRTG | 2 cut(s) | 669, 1398 |
| Msp20I | TGGCCA | 1 cut(s) | 605 |
| MspA1I | CMGCKG | 4 cut(s) | 278, 440, 467, 986 |
| MspR9I | CCNGG | 8 cut(s) | 40, 160, 297, 631, 1215, 1331, 1448, 1474 |
| MvaI | CCWGG | 1 cut(s) | 160 |
| MvnI | CGCG | 7 cut(s) | 62, 187, 237, 1009, 1011, 1026, 1233 |
| NaeI | GCCGGC | 1 cut(s) | 728 |
| NarI | GGCGCC | 1 cut(s) | 691 |
| NciI | CCSGG | 7 cut(s) | 40, 297, 631, 1215, 1331, 1448, 1474 |
| NdeII | GATC | 5 cut(s) | 747, 827, 1035, 1255, 1450 |
| NgoMIV | GCCGGC | 1 cut(s) | 726 |
| NheI | GCTAGC | 1 cut(s) | 266 |
| NlaIII | CATG | 2 cut(s) | 610, 1291 |
| NlaIV | GGNNCC | 9 cut(s) | 112, 274, 323, 337, 525, 642, 692, 1055, 1512 |
| NmeAIII | GCCGAG | 2 cut(s) | 719, 1321 |
| NmuCI | GTSAC | 1 cut(s) | 1549 |
| NruI | TCGCGA | 1 cut(s) | 1233 |
| OliI | CACNNNNGTG | 1 cut(s) | 1398 |
| PaqCI | CACCTGC | 1 cut(s) | 344 |
| PasI | CCCWGGG | 1 cut(s) | 159 |
| PceI | AGGCCT | 1 cut(s) | 452 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 92, 184, 339 |
| PdiI | GCCGGC | 1 cut(s) | 728 |
| PdmI | GAANNNNTTC | 1 cut(s) | 660 |
| PfeI | GAWTC | 5 cut(s) | 35, 83, 311, 529, 754 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 588 |
| PleI | GAGTC | 3 cut(s) | 758, 1144, 1426 |
| PluTI | GGCGCC | 1 cut(s) | 694 |
| PmaCI | CACGTG | 1 cut(s) | 925 |
| PmlI | CACGTG | 1 cut(s) | 925 |
| PpsI | GAGTC | 3 cut(s) | 758, 1144, 1426 |
| Ppu21I | YACGTR | 1 cut(s) | 925 |
| PpuMI | RGGWCCY | 2 cut(s) | 641, 1511 |
| Psp124BI | GAGCTC | 1 cut(s) | 200 |
| Psp5II | RGGWCCY | 2 cut(s) | 641, 1511 |
| Psp6I | CCWGG | 1 cut(s) | 158 |
| PspCI | CACGTG | 1 cut(s) | 925 |
| PspFI | CCCAGC | 1 cut(s) | 1311 |
| PspGI | CCWGG | 1 cut(s) | 158 |
| PspN4I | GGNNCC | 9 cut(s) | 112, 274, 323, 337, 525, 642, 692, 1055, 1512 |
| PspPI | GGNCC | 7 cut(s) | 298, 641, 842, 1309, 1445, 1475, 1511 |
| PspPPI | RGGWCCY | 2 cut(s) | 641, 1511 |
| PstI | CTGCAG | 1 cut(s) | 109 |
| RruI | TCGCGA | 1 cut(s) | 1233 |
| RsaI | GTAC | 6 cut(s) | 294, 323, 818, 910, 998, 1156 |
| RsaNI | GTAC | 6 cut(s) | 293, 322, 817, 909, 997, 1155 |
| RseI | CAYNNNNRTG | 2 cut(s) | 669, 1398 |
| SacI | GAGCTC | 1 cut(s) | 200 |
| SalI | GTCGAC | 2 cut(s) | 344, 1103 |
| SaqAI | TTAA | 1 cut(s) | 381 |
| Sau3AI | GATC | 5 cut(s) | 747, 827, 1035, 1255, 1450 |
| Sau96I | GGNCC | 7 cut(s) | 298, 641, 842, 1309, 1445, 1475, 1511 |
| SbfI | CCTGCAGG | 1 cut(s) | 109 |
| SchI | GAGTC | 3 cut(s) | 758, 1145, 1426 |
| ScrFI | CCNGG | 8 cut(s) | 40, 160, 297, 631, 1215, 1331, 1448, 1474 |
| SdaI | CCTGCAGG | 1 cut(s) | 109 |
| SduI | GDGCHC | 3 cut(s) | 200, 416, 922 |
| SfaNI | GCATC | 5 cut(s) | 358, 447, 1362, 1368, 1482 |
| SfcI | CTRYAG | 1 cut(s) | 105 |
| SfoI | GGCGCC | 1 cut(s) | 692 |
| SgrDI | CGTCGACG | 1 cut(s) | 344 |
| SinI | GGWCC | 2 cut(s) | 641, 1511 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 669, 1398 |
| SmlI | CTYRAG | 1 cut(s) | 718 |
| SmoI | CTYRAG | 1 cut(s) | 718 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 109 |
| Sse9I | AATT | 4 cut(s) | 551, 1060, 1168, 1273 |
| SseBI | AGGCCT | 1 cut(s) | 452 |
| SspDI | GGCGCC | 1 cut(s) | 690 |
| SspMI | CTAG | 3 cut(s) | 201, 231, 267 |
| SstI | GAGCTC | 1 cut(s) | 200 |
| StuI | AGGCCT | 1 cut(s) | 452 |
| StyD4I | CCNGG | 8 cut(s) | 38, 158, 295, 629, 1213, 1329, 1446, 1472 |
| StyI | CCWWGG | 2 cut(s) | 502, 1396 |
| TaaI | ACNGT | 6 cut(s) | 649, 809, 908, 1321, 1420, 1441 |
| TaiI | ACGT | 5 cut(s) | 12, 51, 401, 863, 927 |
| TaqI | TCGA | 7 cut(s) | 23, 345, 455, 750, 830, 880, 1104 |
| TasI | AATT | 4 cut(s) | 551, 1060, 1168, 1273 |
| TauI | GCSGC | 9 cut(s) | 65, 224, 273, 374, 377, 726, 1310, 1384, 1472 |
| TfiI | GAWTC | 5 cut(s) | 35, 83, 311, 529, 754 |
| Tru1I | TTAA | 1 cut(s) | 381 |
| Tru9I | TTAA | 1 cut(s) | 381 |
| TscAI | CASTG | 2 cut(s) | 34, 123 |
| TseFI | GTSAC | 1 cut(s) | 1549 |
| TseI | GCWGC | 6 cut(s) | 263, 424, 476, 699, 983, 1466 |
| Tsp45I | GTSAC | 1 cut(s) | 1549 |
| TspDTI | ATGAA | 2 cut(s) | 404, 623 |
| TspGWI | ACGGA | 2 cut(s) | 84, 889 |
| TspRI | CASTG | 2 cut(s) | 34, 123 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 588 |
| VpaK11BI | GGWCC | 2 cut(s) | 641, 1511 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 879, 1400 |
| XapI | RAATTY | 2 cut(s) | 551, 1060 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1394 |
| XmiI | GTMKAC | 3 cut(s) | 345, 1104, 1139 |
| XmnI | GAANNNNTTC | 1 cut(s) | 660 |
| XspI | CTAG | 3 cut(s) | 201, 231, 267 |