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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 377, 413 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 423 |
| AccBSI | CCGCTC | 2 cut(s) | 121, 687 |
| AccII | CGCG | 1 cut(s) | 300 |
| AcoI | YGGCCR | 2 cut(s) | 105, 189 |
| AfaI | GTAC | 3 cut(s) | 344, 484, 637 |
| AflIII | ACRYGT | 1 cut(s) | 165 |
| AgsI | TTSAA | 1 cut(s) | 212 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 651 |
| AjnI | CCWGG | 2 cut(s) | 502, 609 |
| AluBI | AGCT | 2 cut(s) | 103, 458 |
| AluI | AGCT | 2 cut(s) | 103, 458 |
| Alw26I | GTCTC | 1 cut(s) | 638 |
| Ama87I | CYCGRG | 2 cut(s) | 624, 663 |
| AoxI | GGCC | 7 cut(s) | 4, 27, 69, 105, 189, 243, 616 |
| ApeKI | GCWGC | 6 cut(s) | 175, 302, 305, 365, 400, 403 |
| AspLEI | GCGC | 1 cut(s) | 302 |
| AspS9I | GGNCC | 4 cut(s) | 4, 28, 616, 669 |
| AsuC2I | CCSGG | 2 cut(s) | 625, 626 |
| AsuHPI | GGTGA | 3 cut(s) | 278, 439, 572 |
| AsuNHI | GCTAGC | 1 cut(s) | 700 |
| AvaI | CYCGRG | 2 cut(s) | 624, 663 |
| AvaII | GGWCC | 1 cut(s) | 669 |
| AxyI | CCTNAGG | 1 cut(s) | 288 |
| BanI | GGYRCC | 2 cut(s) | 377, 413 |
| BanII | GRGCYC | 1 cut(s) | 287 |
| BauI | CACGAG | 1 cut(s) | 93 |
| BbvI | GCAGC | 6 cut(s) | 162, 289, 292, 377, 387, 415 |
| BccI | CCATC | 2 cut(s) | 425, 626 |
| BceAI | ACGGC | 2 cut(s) | 92, 299 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 62, 96 |
| BciT130I | CCWGG | 2 cut(s) | 504, 611 |
| BcnI | CCSGG | 2 cut(s) | 625, 626 |
| BcoDI | GTCTC | 1 cut(s) | 638 |
| BfaI | CTAG | 2 cut(s) | 651, 701 |
| BfmI | CTRYAG | 2 cut(s) | 8, 401 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 242 |
| Bme1390I | CCNGG | 4 cut(s) | 504, 611, 625, 626 |
| Bme18I | GGWCC | 1 cut(s) | 669 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 651 |
| BmeT110I | CYCGRG | 2 cut(s) | 624, 663 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 28, 616, 669 |
| BmiI | GGNNCC | 5 cut(s) | 296, 379, 415, 608, 670 |
| BmrFI | CCNGG | 4 cut(s) | 504, 611, 625, 626 |
| BmsI | GCATC | 3 cut(s) | 70, 429, 443 |
| BmtI | GCTAGC | 1 cut(s) | 704 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 548, 580 |
| BpmI | CTGGAG | 1 cut(s) | 281 |
| Bpu10I | CCTNAGC | 2 cut(s) | 195, 281 |
| BpuMI | CCSGG | 2 cut(s) | 625, 626 |
| Bsa29I | ATCGAT | 2 cut(s) | 420, 437 |
| BsaI | GGTCTC | 1 cut(s) | 638 |
| BsaJI | CCNNGG | 8 cut(s) | 246, 315, 381, 502, 588, 624, 625, 664 |
| Bse118I | RCCGGY | 1 cut(s) | 442 |
| Bse21I | CCTNAGG | 1 cut(s) | 288 |
| Bse3DI | GCAATG | 1 cut(s) | 360 |
| BseBI | CCWGG | 2 cut(s) | 504, 611 |
| BseCI | ATCGAT | 2 cut(s) | 420, 437 |
| BseDI | CCNNGG | 8 cut(s) | 246, 315, 381, 502, 588, 624, 625, 664 |
| BseGI | GGATG | 1 cut(s) | 637 |
| BseMI | GCAATG | 1 cut(s) | 360 |
| BseMII | CTCAG | 3 cut(s) | 272, 279, 581 |
| BseXI | GCAGC | 6 cut(s) | 162, 289, 292, 377, 387, 415 |
| BseYI | CCCAGC | 1 cut(s) | 602 |
| Bsh1236I | CGCG | 1 cut(s) | 300 |
| Bsh1285I | CGRYCG | 1 cut(s) | 447 |
| BshFI | GGCC | 7 cut(s) | 6, 29, 71, 107, 191, 245, 618 |
| BshNI | GGYRCC | 2 cut(s) | 377, 413 |
| BshVI | ATCGAT | 2 cut(s) | 420, 437 |
| BsiEI | CGRYCG | 1 cut(s) | 447 |
| BsiHKCI | CYCGRG | 2 cut(s) | 624, 663 |
| BsiSI | CCGG | 3 cut(s) | 443, 554, 625 |
| BslFI | GGGAC | 4 cut(s) | 29, 154, 580, 639 |
| BsmAI | GTCTC | 1 cut(s) | 638 |
| BsmFI | GGGAC | 4 cut(s) | 29, 154, 580, 639 |
| BsnI | GGCC | 7 cut(s) | 6, 29, 71, 107, 191, 245, 618 |
| Bso31I | GGTCTC | 1 cut(s) | 638 |
| BsoBI | CYCGRG | 2 cut(s) | 624, 663 |
| Bsp1286I | GDGCHC | 1 cut(s) | 287 |
| Bsp19I | CCATGG | 1 cut(s) | 381 |
| BspANI | GGCC | 7 cut(s) | 6, 29, 71, 107, 191, 245, 618 |
| BspCNI | CTCAG | 3 cut(s) | 273, 280, 580 |
| BspDI | ATCGAT | 2 cut(s) | 420, 437 |
| BspFNI | CGCG | 1 cut(s) | 300 |
| BspLI | GGNNCC | 5 cut(s) | 296, 379, 415, 608, 670 |
| BspMAI | CTGCAG | 1 cut(s) | 405 |
| BspOI | GCTAGC | 1 cut(s) | 704 |
| BspT107I | GGYRCC | 2 cut(s) | 377, 413 |
| BspTNI | GGTCTC | 1 cut(s) | 638 |
| BsrBI | CCGCTC | 2 cut(s) | 121, 687 |
| BsrDI | GCAATG | 1 cut(s) | 360 |
| BsrFI | RCCGGY | 1 cut(s) | 442 |
| BssAI | RCCGGY | 1 cut(s) | 442 |
| BssECI | CCNNGG | 8 cut(s) | 246, 315, 381, 502, 588, 624, 625, 664 |
| BssSI | CACGAG | 1 cut(s) | 93 |
| BssT1I | CCWWGG | 1 cut(s) | 381 |
| Bst2BI | CACGAG | 1 cut(s) | 93 |
| Bst2UI | CCWGG | 2 cut(s) | 504, 611 |
| Bst4CI | ACNGT | 3 cut(s) | 77, 144, 585 |
| BstC8I | GCNNGC | 8 cut(s) | 4, 101, 105, 277, 456, 523, 616, 702 |
| BstDEI | CTNAG | 5 cut(s) | 195, 281, 288, 459, 567 |
| BstDSI | CCRYGG | 2 cut(s) | 315, 381 |
| BstF5I | GGATG | 1 cut(s) | 637 |
| BstFNI | CGCG | 1 cut(s) | 300 |
| BstHHI | GCGC | 1 cut(s) | 302 |
| BstMAI | GTCTC | 1 cut(s) | 638 |
| BstMCI | CGRYCG | 1 cut(s) | 447 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 89, 242, 308, 311, 371, 448 |
| BstNI | CCWGG | 2 cut(s) | 504, 611 |
| BstNSI | RCATGY | 1 cut(s) | 169 |
| BstSCI | CCNGG | 4 cut(s) | 502, 609, 623, 624 |
| BstSFI | CTRYAG | 2 cut(s) | 8, 401 |
| BstUI | CGCG | 1 cut(s) | 300 |
| BstV1I | GCAGC | 6 cut(s) | 162, 289, 292, 377, 387, 415 |
| Bsu15I | ATCGAT | 2 cut(s) | 420, 437 |
| Bsu36I | CCTNAGG | 1 cut(s) | 288 |
| BsuRI | GGCC | 7 cut(s) | 6, 29, 71, 107, 191, 245, 618 |
| BsuTUI | ATCGAT | 2 cut(s) | 420, 437 |
| BtgI | CCRYGG | 2 cut(s) | 315, 381 |
| BtsCI | GGATG | 1 cut(s) | 637 |
| BtsI | GCAGTG | 1 cut(s) | 495 |
| BtsIMutI | CAGTG | 1 cut(s) | 495 |
| Cac8I | GCNNGC | 8 cut(s) | 4, 101, 105, 277, 456, 523, 616, 702 |
| CfoI | GCGC | 1 cut(s) | 302 |
| Cfr10I | RCCGGY | 1 cut(s) | 442 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 28, 616, 669 |
| Cfr9I | CCCGGG | 1 cut(s) | 624 |
| ClaI | ATCGAT | 2 cut(s) | 420, 437 |
| CseI | GACGC | 2 cut(s) | 66, 98 |
| Csp6I | GTAC | 3 cut(s) | 343, 483, 636 |
| CviAII | CATG | 2 cut(s) | 166, 382 |
| CviQI | GTAC | 3 cut(s) | 343, 483, 636 |
| DdeI | CTNAG | 5 cut(s) | 195, 281, 288, 459, 567 |
| DriI | GACNNNNNGTC | 1 cut(s) | 651 |
| EaeI | YGGCCR | 2 cut(s) | 105, 189 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 651 |
| EciI | GGCGGA | 1 cut(s) | 561 |
| Eco130I | CCWWGG | 1 cut(s) | 381 |
| Eco24I | GRGCYC | 1 cut(s) | 287 |
| Eco31I | GGTCTC | 1 cut(s) | 638 |
| Eco47I | GGWCC | 1 cut(s) | 669 |
| Eco81I | CCTNAGG | 1 cut(s) | 288 |
| Eco88I | CYCGRG | 2 cut(s) | 624, 663 |
| EcoRII | CCWGG | 2 cut(s) | 502, 609 |
| EcoT14I | CCWWGG | 1 cut(s) | 381 |
| EcoT38I | GRGCYC | 1 cut(s) | 287 |
| ErhI | CCWWGG | 1 cut(s) | 381 |
| FaeI | CATG | 2 cut(s) | 169, 385 |
| FaiI | YATR | 3 cut(s) | 167, 325, 383 |
| FaqI | GGGAC | 4 cut(s) | 29, 154, 580, 639 |
| FatI | CATG | 2 cut(s) | 165, 381 |
| FauI | CCCGC | 3 cut(s) | 171, 284, 607 |
| FokI | GGATG | 1 cut(s) | 644 |
| FriOI | GRGCYC | 1 cut(s) | 287 |
| FspBI | CTAG | 2 cut(s) | 651, 701 |
| GlaI | GCGC | 1 cut(s) | 301 |
| GsaI | CCCAGC | 1 cut(s) | 606 |
| GsuI | CTGGAG | 1 cut(s) | 281 |
| HaeIII | GGCC | 7 cut(s) | 6, 29, 71, 107, 191, 245, 618 |
| HapII | CCGG | 3 cut(s) | 443, 554, 625 |
| HgaI | GACGC | 2 cut(s) | 66, 98 |
| HhaI | GCGC | 1 cut(s) | 302 |
| Hin1II | CATG | 2 cut(s) | 169, 385 |
| Hin6I | GCGC | 1 cut(s) | 300 |
| HinP1I | GCGC | 1 cut(s) | 300 |
| HinfI | GANTC | 4 cut(s) | 227, 320, 563, 574 |
| HpaII | CCGG | 3 cut(s) | 443, 554, 625 |
| HphI | GGTGA | 3 cut(s) | 278, 439, 572 |
| Hpy188I | TCNGA | 2 cut(s) | 589, 673 |
| Hpy99I | CGWCG | 1 cut(s) | 60 |
| HpyAV | CCTTC | 4 cut(s) | 199, 364, 403, 424 |
| HpyCH4III | ACNGT | 3 cut(s) | 77, 144, 585 |
| HpyCH4V | TGCA | 2 cut(s) | 220, 403 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 89, 242, 308, 311, 371, 448 |
| HpyF3I | CTNAG | 5 cut(s) | 195, 281, 288, 459, 567 |
| Hsp92II | CATG | 2 cut(s) | 169, 385 |
| HspAI | GCGC | 1 cut(s) | 300 |
| LmnI | GCTCC | 2 cut(s) | 157, 294 |
| Lsp1109I | GCAGC | 6 cut(s) | 162, 289, 292, 377, 387, 415 |
| LweI | GCATC | 3 cut(s) | 70, 429, 443 |
| MaeI | CTAG | 2 cut(s) | 651, 701 |
| MaeIII | GTNAC | 1 cut(s) | 560 |
| MbiI | CCGCTC | 2 cut(s) | 121, 687 |
| MhlI | GDGCHC | 1 cut(s) | 287 |
| MlyI | GAGTC | 4 cut(s) | 236, 329, 557, 568 |
| MmeI | TCCRAC | 2 cut(s) | 135, 696 |
| MspA1I | CMGCKG | 2 cut(s) | 472, 571 |
| MspI | CCGG | 3 cut(s) | 443, 554, 625 |
| MspR9I | CCNGG | 4 cut(s) | 504, 611, 625, 626 |
| MvaI | CCWGG | 2 cut(s) | 504, 611 |
| MvnI | CGCG | 1 cut(s) | 300 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 89, 242, 308, 311, 371, 448 |
| NciI | CCSGG | 2 cut(s) | 625, 626 |
| NcoI | CCATGG | 1 cut(s) | 381 |
| NheI | GCTAGC | 1 cut(s) | 700 |
| NlaIII | CATG | 2 cut(s) | 169, 385 |
| NlaIV | GGNNCC | 5 cut(s) | 296, 379, 415, 608, 670 |
| NmeAIII | GCCGAG | 1 cut(s) | 271 |
| NmuCI | GTSAC | 1 cut(s) | 560 |
| NspI | RCATGY | 1 cut(s) | 169 |
| PciI | ACATGT | 1 cut(s) | 165 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 423 |
| PleI | GAGTC | 4 cut(s) | 235, 328, 557, 568 |
| PpsI | GAGTC | 4 cut(s) | 235, 328, 557, 568 |
| PscI | ACATGT | 1 cut(s) | 165 |
| Psp6I | CCWGG | 2 cut(s) | 502, 609 |
| PspFI | CCCAGC | 1 cut(s) | 602 |
| PspGI | CCWGG | 2 cut(s) | 502, 609 |
| PspN4I | GGNNCC | 5 cut(s) | 296, 379, 415, 608, 670 |
| PspPI | GGNCC | 4 cut(s) | 4, 28, 616, 669 |
| PstI | CTGCAG | 1 cut(s) | 405 |
| RsaI | GTAC | 3 cut(s) | 344, 484, 637 |
| RsaNI | GTAC | 3 cut(s) | 343, 483, 636 |
| Sau96I | GGNCC | 4 cut(s) | 4, 28, 616, 669 |
| SchI | GAGTC | 4 cut(s) | 236, 329, 557, 568 |
| ScrFI | CCNGG | 4 cut(s) | 504, 611, 625, 626 |
| SduI | GDGCHC | 1 cut(s) | 287 |
| SetI | ASST | 7 cut(s) | 41, 105, 210, 252, 460, 513, 594 |
| SfaNI | GCATC | 3 cut(s) | 70, 429, 443 |
| SfcI | CTRYAG | 2 cut(s) | 8, 401 |
| SinI | GGWCC | 1 cut(s) | 669 |
| SmaI | CCCGGG | 1 cut(s) | 626 |
| SspMI | CTAG | 2 cut(s) | 651, 701 |
| StyD4I | CCNGG | 4 cut(s) | 502, 609, 623, 624 |
| StyI | CCWWGG | 1 cut(s) | 381 |
| TaaI | ACNGT | 3 cut(s) | 77, 144, 585 |
| TaqI | TCGA | 3 cut(s) | 51, 420, 437 |
| TaqII | GACCGA | 1 cut(s) | 374 |
| TatI | WGTACW | 1 cut(s) | 342 |
| TscAI | CASTG | 1 cut(s) | 502 |
| TseFI | GTSAC | 1 cut(s) | 560 |
| TseI | GCWGC | 6 cut(s) | 175, 302, 305, 365, 400, 403 |
| Tsp45I | GTSAC | 1 cut(s) | 560 |
| TspMI | CCCGGG | 1 cut(s) | 624 |
| TspRI | CASTG | 1 cut(s) | 502 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 423 |
| VpaK11BI | GGWCC | 1 cut(s) | 669 |
| XceI | RCATGY | 1 cut(s) | 169 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 388 |
| XmaI | CCCGGG | 1 cut(s) | 624 |
| XspI | CTAG | 2 cut(s) | 651, 701 |